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Implemented "if" to check if settings file exists and put corresponding default values. At end of plugin, the settings file is (re)written with the new parameters.

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dejea_h
2019-10-10 15:02:25 +02:00
parent 1c6a324991
commit 13dc11a66c
1 changed files with 47 additions and 10 deletions
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57
plugins/Multiscale_Coords.ijm
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@@ -30,16 +30,32 @@ the ROI interactively to the desired position, and the movements in
um are given as the result. Start and end position values for stitched
scans are also available. */
//Retrieve dimensions of the loaded stack
getDimensions(mywidth, myheight, mychannels, myslices, myframes);
//Check if there is a file containing the multiscale settings
settings_path = getDirectory("home") + "/.multiscale_settings.txt";
//Set default values
i=1;
if (File.exists(settings_path)){
if (i==0){
//Set default parameters specified in the file
parameters_file = File.openAsString(settings_path);
lines=split(parameters_file,"\n");
LowResimagePixelSize = lines[3];
ZZcenterLowRes = lines[5];
XXcenterLowRes = lines[7];
YposLowRes = lines[9];
cameraFOVX = lines[11];
cameraFOVY = lines[13];
HighResimagePixelSize = lines[15];
CameraMoveX = lines[17];
CameraMoveY = lines[19];
stageRotation = parseFloat(lines[21]); // TO DO: angular correction //
overlapXZ = lines[23];
overlapY = lines[25];
} else {
//No settings file has been found. Set following default values
//No settings file has been found. Set default values
LowResimagePixelSize = 6.5;
ZZcenterLowRes = 0;
XXcenterLowRes = 0;
@@ -53,11 +69,15 @@ if (i==0){
overlapXZ = cameraFOVX*0.3;
overlapY = 50;
ScansInX = 1;
ScansInZ = 1;
//SlicesInY is defined later, depending on user inputs
}
ScansInX = 1;
ScansInZ = 1;
//SlicesInY is defined later, depending on user inputs
//Retrieve dimensions of the loaded stack
getDimensions(mywidth, myheight, mychannels, myslices, myframes);
//Flag to restart the plugin
repeatFlag = 1;
while(repeatFlag == 1) {
@@ -253,7 +273,6 @@ while(repeatFlag == 1) {
repeatFlag = Dialog.getCheckbox();
txtFlag = Dialog.getCheckbox();
//Set stageRotation back to degrees after the RepeatFlag
stageRotation = stageRotation*360/(2*PI);
@@ -279,6 +298,24 @@ while(repeatFlag == 1) {
Overlay.remove;
}
//Save txt file with the parameters used, so that they are default for next use.
settings_file = File.open(settings_path);
settings_array = "File containing the last settings used in Multiscale_Coords.ijm\n" +
"\nLowResimagePixelSize\n" + LowResimagePixelSize +
"\nZZcenterLowRes\n" + ZZcenterLowRes +
"\nXXcenterLowRes\n" + XXcenterLowRes +
"\nYposLowRes\n" + YposLowRes +
"\ncameraFOVX\n" + cameraFOVX +
"\ncameraFOVY\n" + cameraFOVY +
"\nHighResimagePixelSize\n" + HighResimagePixelSize +
"\nCameraMoveX\n" + CameraMoveX +
"\nCameraMoveY\n" + CameraMoveY +
"\nstageRotation\n" + stageRotation + // TO DO: angular correction //
"\noverlapXZ\n" + overlapXZ +
"\noverlapY\n" + overlapY;
print(settings_file, settings_array);
File.close(settings_file);
} //END
////////////////////////////////////////////////////////////////////////////////