Update SOPHIE Alignment
@@ -40,8 +40,30 @@ In this design the virtual drift is determined by the long reference mirrors in
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| Figure 3. Design drawings and 3D render of the reference mirrors. The [alignment screws](https://www.thorlabs.com/thorproduct.cfm?partnumber=P25SB100V) ([P25SB100V](uploads/48b6c202c417e8f890c64728ddda7d4a/P25SB100V-AutoCADPDF.pdf)) have a thread of 1/4''-100 and so each full turn will change the local mirror height by XX. |
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| Figure 3. Design drawings and 3D render of the reference mirrors. The [alignment screws](https://www.thorlabs.com/thorproduct.cfm?partnumber=P25SB100V) ([P25SB100V](uploads/48b6c202c417e8f890c64728ddda7d4a/P25SB100V-AutoCADPDF.pdf)) have a thread of 1/4''-100 and so each full turn will change the local mirror height by 25.4 microns (clockwise to raise mirror face). Turning the 2 upper screws by a full turn in opposite directions will adjust the tilt of the mirror by 0.282 mrad. |
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## Fixing the SOPHIE Alignment
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### Characterise the Virtual Drift
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1. Ensure that no software drift correction is being applied by checking the values of zCorrectMatrix in the [Orocos Deployer](https://gitlab.psi.ch/microspectro/pixelator/-/wikis/Running-Orocos) and then setting both elements to zero:
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```
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Sensor1.zCorrectMatrix[0] = 0.0
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Sensor1.zCorrectMatrix[1] = 0.0
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```
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2. Open the interferometer EPICS panel to see the raw outputs from the J/K interferometers before they are translated into X/Y positions. These values will be in terms of fringes and can be interpreted in microns by multiplying by the sensor resolution factor set in [`start.ops`](https://gitlab.psi.ch/microspectro/pixelator/-/blob/master/PixelatorRealtime/startup/SIM/start.ops?ref_type=heads#L45) (0.0001545388). (Alternatively, turn off the transformation by setting `Sensor1.transform=0` in [`start.ops`](https://gitlab.psi.ch/microspectro/pixelator/-/blob/master/PixelatorRealtime/startup/SIM/start.ops?ref_type=heads#L49), which will also disable the software drift correction).
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3. Switch off the sample stage feedback by jogging the coarse sample stage.
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4. Note the interferometer values and ZP-Z position.
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5. Move the ZP-Z stage by a defined amount.
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6. Note the new interferometer values and ZP-Z position.
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7. Calculate the effective mirror tilts of the J and K interferometer reference mirrors.
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8. Calculate the number of screw turns required to remove the calculated tilt from the reference mirrors.
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### Fix the Virtual Drift
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Apply the calculated screw turns to make the reference mirror parallel and then further adjust the interferometer components to compensate the beam alignment and optimise the signal strength.
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### Characterise and Fix the Real Drift (Requires X-rays)
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