suter_a
c9fc373862
improved dat-file reading for mupp.
2024-07-02 09:26:44 +02:00
suter_a
ebefcf7af9
updated the docu.
2024-06-24 09:44:07 +02:00
suter_a
64d3b6192b
added the option to write the content of the MINUIT2.OUTPUT ascii file as yaml. This extends the previous commit from Ryan M.L. McFadden.
2024-06-18 11:16:15 +02:00
suter_a
6bcb26f9d5
Merge branch 'root6' of https://bitbucket.org/muonspin/musrfit into root6
2024-06-18 08:19:01 +02:00
ext-mcfadd_r
6b865efd3b
Merged in ignore (pull request #17 )
...
ignore all files generated from an in-repo build
Approved-by: Andreas Suter
2024-06-18 06:18:56 +00:00
ext-mcfadd_r
caccfb175a
Merged in yaml (pull request #16 )
...
write the fit results to an easy-to-read/parse yaml file
Approved-by: Andreas Suter
2024-06-18 06:18:31 +00:00
ext-mcfadd_r
1845b5c176
Merged in segfault (pull request #15 )
...
fix segfault
Approved-by: Andreas Suter
2024-06-18 06:18:14 +00:00
ext-mcfadd_r
8821112927
ignore all files generated from an in-repo build
2024-06-17 13:07:06 -03:00
ext-mcfadd_r
833171c712
write the fit results to an easy-to-read/parse yaml file
...
This patch adds routines for writing a comprehensive set of fit results (i.e., parameter values, parabolic errors, asymmetric errors, covariances, correlation coefficients, etc.) for an individual `.msr` file to an easy-to-read/parse `.yaml` file.
The main motivation for the code addition is to provide users with easy access to the fit's covariance matrix without the need for "extra" manual effort (e.g., parsing the contents of `MINUIT2.OUTPUT` or `MINUIT2.root`). The other fit quantities are also included for completeness.
Reading/accessing the output is trivial using, for example, the PyYAML Python library (https://github.com/yaml/pyyaml ):
```python
import yaml
with open("2125_tf_histo.yaml", "r") as fh:
results = yaml.load(fh, Loader=yaml.SafeLoader)
cov = results["covariance"]["Field_1"]["Sigma_1"]
```
Note: the naming conventions chosen for the blocks in the `.yaml` output closely follow those used by the iminuit Python library (https://github.com/scikit-hep/iminuit ).
2024-06-17 12:51:04 -03:00
ext-mcfadd_r
61749b91c4
fix segfault
...
This patch provides a memory-safe alternative to the changes introduced in commit 418adfde67https://github.com/root-project/root/blob/542b98b2ccca760fd83117b750b89d81b8e9b926/core/base/src/TApplication.cxx#L179-L180 ).
2024-06-17 10:52:14 -03:00
suter_a
3d92e2eefb
add CPU info to the configure process.
2024-06-09 17:45:02 +02:00
suter_a
b71dce9291
remove more accidently added file.
2024-06-08 16:39:57 +02:00
suter_a
1aa4ce0a99
remove accidentely added file.
2024-06-08 16:36:54 +02:00
suter_a
425ed02e22
update of the docu.
2024-06-08 09:23:36 +02:00
suter_a
a36abfc461
updated version info, due to the macOS OpenMP support.
2024-06-08 09:17:05 +02:00
suter_a
ccaba41868
modernize the way how to check/deal with OpenMP. This helps also on the macOS side.
2024-06-07 12:44:59 +02:00
suter_a
418adfde67
propagate only necessary root flags to TApplication.
2024-06-06 10:06:50 +02:00
suter_a
66df43c663
moved mupp examples form the mupp source destination to doc/examples.
2024-04-26 15:54:44 +02:00
suter_a
4a6885f55b
update of the documentation.
2024-04-23 10:50:11 +02:00
suter_a
92b1aac7a6
got rid off some double brackets.
2024-04-20 18:13:09 +02:00
suter_a
26e25ce10b
fixed a fruther bracket bug.
2024-04-20 17:39:18 +02:00
suter_a
cedaabeb98
improved bracket handling in function string generation.
2024-04-20 09:40:04 +02:00
suter_a
032510fbcb
update of the ChangeLog.
2024-04-19 12:44:43 +02:00
suter_a
8cfd0bcc4a
increased musrfit patch number.
2024-04-19 12:40:50 +02:00
suter_a
7198521f60
make sure that brackets are not lost in the function reconstruct, e.g. 1/(2*parX) is not going over into 1/2*parX.
2024-04-19 12:39:01 +02:00
suter_a
834884f3a4
improved variable description.
2024-04-19 12:36:24 +02:00
suter_a
80591f6f13
fixed an error in DumpHeader when dumping a TDoubleVector.
2024-03-16 15:59:17 +01:00
suter_a
44456c49e9
fixed a typo: Atoi() instead of Atof().
2024-03-16 15:34:00 +01:00
suter_a
495f02c3c6
for macos: add /usr/local/lib to DYLD_LIBRARY_PATH for qt5. This is needed to find the nexus lib.
2024-03-07 12:31:32 +01:00
suter_a
ad2e84581f
revert back to boost ellint_1, since on many compilers the c++17 std::comp_ellint_1 is not yet implemented.
2024-03-05 18:29:34 +01:00
suter_a
59dbae4a1e
use the QProcess startDetached method and not the static one.
2024-02-14 09:30:17 +01:00
suter_a
4d176c395c
use the QProcess startDetached method and not the static one.
2024-02-14 09:26:27 +01:00
suter_a
74978025fb
start musrview as detached process: simplifies things.
2024-02-13 10:12:50 +01:00
suter_a
deeee783f5
add /usr/local/lib to default DYLD_LIBRARY_PATH for macOS.
2024-02-08 14:00:06 +01:00
suter_a
cadd28b9fe
Merge branch 'root6' of https://git.psi.ch/nemu/musrfit into root6
2024-02-03 20:01:01 +01:00
suter_a
79c8be54bf
update of the copyright info.
2024-02-03 19:58:11 +01:00
suter_a
3cf89c6571
added some missing qutation marks musrfit_startup.xml.
2023-11-29 12:47:24 +01:00
suter_a
673a742631
added some more default search path to default musrfit_startup.xml.
2023-11-29 12:44:58 +01:00
suter_a
f68775dd64
Merge branch 'root6' of https://gitlab.psi.ch/nemu/musrfit into root6
2023-11-15 16:07:37 +01:00
suter_a
23bf2ec2fc
added proper rpath handling.
2023-11-15 16:04:21 +01:00
suter_a
23ac67a443
add an option to musrfit which allows to replace to musrfit_startup.xml by the default one.
2023-11-11 18:26:25 +01:00
suter_a
d6a3767040
adopted default path/file-name scheme to the current state.
2023-11-10 15:05:38 +01:00
suter_a
75d0c9e01a
adopted the technical doxygen files to the current state.
2023-11-10 08:26:52 +01:00
suter_a
ecd9e4a953
improved the nonlocal field dump, by allowing a custom range.
2023-11-08 12:57:16 +01:00
suter_a
3c2b0322c0
mupp: got rid of some left over raw pointers by replacing them through smartpointers.
2023-11-03 07:54:52 +01:00
suter_a
4747fbc77d
make sure that singleRunMsrFile is a legal pointer before proceeding.
2023-11-01 14:38:21 +01:00
suter_a
b1b808ad7b
switched TGapIntegrals from raw -> smart pointers.
2023-11-01 08:54:24 +01:00
suter_a
2d1875ebfe
remove unused code.
2023-11-01 08:27:48 +01:00
suter_a
d221ef1ed0
more work in switching raw -> smart pointer.
2023-11-01 08:27:04 +01:00
suter_a
f7c45f46ff
switched TLondon1D from raw -> smart pointers.
2023-11-01 08:00:47 +01:00
suter_a
ext-mcfadd_r