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Author SHA1 Message Date
ext-mcfadd_r 05c8625dc1 ignore all files generated from an in-repo build 2024-06-18 12:55:51 +02:00
ext-mcfadd_r 78eb8653ce write the fit results to an easy-to-read/parse yaml file 
This patch adds routines for writing a comprehensive set of fit results (i.e., parameter values, parabolic errors, asymmetric errors, covariances, correlation coefficients, etc.) for an individual `.msr` file to an easy-to-read/parse `.yaml` file.

The main motivation for the code addition is to provide users with easy access to the fit's covariance matrix without the need for "extra" manual effort (e.g., parsing the contents of `MINUIT2.OUTPUT` or `MINUIT2.root`). The other fit quantities are also included for completeness.

Reading/accessing the output is trivial using, for example, the PyYAML Python library (https://github.com/yaml/pyyaml):

```python
import yaml

with open("2125_tf_histo.yaml", "r") as fh:
	results = yaml.load(fh, Loader=yaml.SafeLoader)

cov = results["covariance"]["Field_1"]["Sigma_1"]
```

Note: the naming conventions chosen for the blocks in the `.yaml` output closely follow those used by the iminuit Python library (https://github.com/scikit-hep/iminuit).
 2024-06-18 12:55:32 +02:00
ext-mcfadd_r 1a1e756d77 fix segfault 
This patch provides a memory-safe alternative to the changes introduced in commit 418adfde67, which causes a segfault when the "batch mode" flag is required (i.e., for ascii/graphic export).

Note: the program name (i.e., argv[0]) has been added the list arguments passed to ROOT's TApplication. This ensures that the TApplication name matches that of the program (see https://github.com/root-project/root/blob/542b98b2ccca760fd83117b750b89d81b8e9b926/core/base/src/TApplication.cxx#L179-L180).
 2024-06-18 12:55:10 +02:00
suter_a f62a3cc88e add CPU info to the configure process. 2024-06-10 11:14:54 +02:00
suter_a a9d84b87e1 remove more accidently added file. 2024-06-08 16:41:51 +02:00
suter_a 50781aa413 remove accidentely added file. 2024-06-08 16:41:38 +02:00
suter_a fa37bae855 update of the docu. 2024-06-08 16:29:05 +02:00
suter_a aa32d07929 updated version info, due to the macOS OpenMP support. 2024-06-08 16:28:48 +02:00
suter_a 45d87bc645 modernize the way how to check/deal with OpenMP. This helps also on the macOS side. 2024-06-07 15:31:34 +02:00
suter_a 6a7178b3a9 propagate only necessary root flags to TApplication. 2024-06-06 10:04:03 +02:00
suter_a d6cc0f3c0e moved mupp examples form the mupp source destination to doc/examples. 2024-04-26 16:05:00 +02:00
suter_a 04181ad1e0 update of the documentation. 2024-04-23 11:00:54 +02:00
suter_a c9ecca0c19 got rid off some double brackets. 2024-04-20 18:18:32 +02:00
suter_a 1a5561b265 fixed a fruther bracket bug. 2024-04-20 17:52:22 +02:00
suter_a 65066596e8 improved bracket handling in function string generation. 2024-04-20 09:59:23 +02:00
suter_a c7b0d2b40f update of the ChangeLog. 2024-04-20 09:59:14 +02:00
suter_a 90d5e74289 increased musrfit patch number. 2024-04-20 09:59:04 +02:00
suter_a d66b2f383c make sure that brackets are not lost in the function reconstruct, e.g. 1/(2*parX) is not going over into 1/2*parX. 2024-04-20 09:58:51 +02:00
suter_a 847a2cfb8e improved variable description. 2024-04-20 09:58:40 +02:00
suter_a 2dfa28d5c0 fixed an error in DumpHeader when dumping a TDoubleVector. 2024-03-17 09:29:17 +01:00
suter_a 9440ddbb40 fixed a typo: Atoi() instead of Atof(). 2024-03-17 09:29:08 +01:00
suter_a e149f73d15 for macos: add /usr/local/lib to DYLD_LIBRARY_PATH for qt5. This is needed to find the nexus lib. 2024-03-17 09:28:45 +01:00
suter_a 445d48cfbf revert back to boost ellint_1, since on many compilers the c++17 std::comp_ellint_1 is not yet implemented. 2024-03-17 09:24:10 +01:00
suter_a 1b882c20b3 use the QProcess startDetached method and not the static one. 2024-02-14 12:14:53 +01:00
suter_a 71a7267028 use the QProcess startDetached method and not the static one. 2024-02-14 12:14:33 +01:00
suter_a 0760a836b4 start musrview as detached process: simplifies things. 2024-02-14 12:14:19 +01:00
suter_a 057ae07be6 add /usr/local/lib to default DYLD_LIBRARY_PATH for macOS. 2024-02-08 14:04:31 +01:00
suter_a 17339e191d updated copyright info. 2024-02-07 15:29:08 +01:00
suter_a fb7a3517e9 added some missing qutation marks musrfit_startup.xml. 2023-12-05 09:34:42 +01:00
suter_a 2eb888874d added some more default search path to default musrfit_startup.xml. 2023-12-05 09:34:35 +01:00
suter_a 326587c912 added proper rpath handling. 2023-11-17 09:02:58 +01:00
suter_a df926a4d66 add an option to musrfit which allows to replace to musrfit_startup.xml by the default one. 2023-11-17 09:02:40 +01:00
suter_a f72a213bd8 adopted default path/file-name scheme to the current state. 2023-11-10 15:22:16 +01:00
suter_a 4c222a4c1b adopted the technical doxygen files to the current state. 2023-11-10 15:22:03 +01:00
suter_a 7384ce4b89 improved the nonlocal field dump, by allowing a custom range. 2023-11-09 13:15:21 +01:00
suter_a 0ee1d4e264 mupp: got rid of some left over raw pointers by replacing them through smartpointers. 2023-11-09 13:15:08 +01:00
suter_a 18b06267d2 make sure that singleRunMsrFile is a legal pointer before proceeding. 2023-11-09 13:14:56 +01:00
suter_a cfccb30eb8 switched TGapIntegrals from raw -> smart pointers. 2023-11-09 13:14:47 +01:00
suter_a 9524e7201c remove unused code. 2023-11-09 13:14:34 +01:00
suter_a 250b786766 more work in switching raw -> smart pointer. 2023-11-09 13:13:25 +01:00
suter_a 7765f24ce0 switched TLondon1D from raw -> smart pointers. 2023-11-09 13:12:52 +01:00
suter_a e8511dbe8b fixed stupid copy/paste error when switching to smart pointers in PMusrWiz. 2023-11-09 13:12:39 +01:00
suter_a 3dd8e404dc adopted MusrRootDefinition doc to smart pointer use. Updated MusrRootDefinition.pdf 2023-11-09 13:12:13 +01:00
suter_a ae75478043 adopted MusrRootDefinition doc to smart pointer use. 2023-11-09 13:12:02 +01:00
suter_a 6340f9d196 more work on Raw -> Smart Pointers for external libs. 2023-11-09 13:11:51 +01:00
suter_a 4726764306 Raw -> Smart Pointers in TMusrRunHeader. 2023-11-09 13:11:40 +01:00
suter_a 4ba2502788 Raw -> Smart Pointers in PNeXus. 2023-11-09 13:11:21 +01:00
suter_a 2eec7bd182 Nonlocal: Raw -> Smart Pointers. Improved config of standalone dump_nonlocal_field. 2023-11-09 13:11:07 +01:00
suter_a fb8ca28ea3 print for debug: the ostream need explicit string not char[]. 2023-10-25 13:49:05 +02:00
suter_a d96d1f68d5 increased main version to 1.9.2, libPMusr to 1.4.0, and mupp to 1.1.0. 2023-10-25 10:59:25 +02:00