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updating docu

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@ -9,6 +9,7 @@ changes since 0.11.0
NEW 2012-04-24 added a first version for negative muon fitting. At the same
time substaintial bug fixing has been carried out (mainly the
logx/logy handling).
CHANGED 2012-05-08 updating docu
changes since 0.10.0
===================================

35
doc/html/user/MUSR/BmwLibs.html
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@ -1,7 +1,7 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html lang="en_US">
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@ -21,7 +21,7 @@
<meta name="TEXT_MODIFY_SEARCH" content="Modify search" />
<link rel="icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" /> <link rel="shortcut icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" />
<link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/BmwLibs?t=1333030351" type="application/x-wiki" title="edit BmwLibs" />
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@ -109,7 +109,7 @@ pre {
</style><![endif]-->
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@ -144,39 +144,12 @@ pre {
</div>
</div></div><!-- /endWrap -->
<p></p>
<!-- gugus -->
<div id='peopleIcon' onmouseout='$(this).css("visibility","hidden")'>
<img id='peopleIconImg' src='../data/people/information.png'>
</div>
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<table id='tooltip_table'>
<tr>
<td id='tooltip_avatar' rowspan='4'><img id='tooltip_avatar_img' src='../data/people/nobody-100.gif' /></td>
<td id='tooltip_username' colspan='2'>Oscar Fridolin</td>
</tr>
<tr>
<td id='tooltip_tel_title'>Telefon:</td>
<td id='tooltip_tel'>1234512345</td>
</tr>
<tr>
<td id='tooltip_mail_title'>E-Mail:</td>
<td id='tooltip_mail'>oscarfridolin@psi.ch</td>
</tr>
<tr>
<td id='tooltip_office_title'>Büro:</td>
<td id='tooltip_office'>WHGA/019</td>
</tr>
</table>
</div>
</div> <!--6711-->
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<p></p>
<p></p>
<p></p>
</body>
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49
doc/html/user/MUSR/LibFitPofB.html
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@ -1,7 +1,7 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html lang="en_US">
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@ -21,7 +21,7 @@
<meta name="TEXT_MODIFY_SEARCH" content="Modify search" />
<link rel="icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" /> <link rel="shortcut icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" />
<link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/LibFitPofB?t=1333030351" type="application/x-wiki" title="edit LibFitPofB" />
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<meta name="description" content="LibFitPofB" />
<base /><!--[if IE]></base><![endif]-->
@ -109,7 +109,7 @@ pre {
</style><![endif]-->
<script src="https://intranet.psi.ch/pub/System/ChecklistPlugin/itemstatechange.js" language="javascript" type="text/javascript"></script><script src="https://intranet.psi.ch/pub/System/TimeTablePlugin/timetabletooltips.js" language="javascript" type="text/javascript"></script><link rel="stylesheet" href="../pub/System/FootNotePlugin/styles.css" type="text/css" media="all" /><!--FOOTNOTEPLUGIN_LINKCSS-->
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@ -147,13 +147,13 @@ where <img alt="\gamma&#95;{\mu} &#61; 2\pi\times 135.54~\mathrm{MHz/T}" class="
At the moment the only available implementations deal with field distributions measured in local isotropic superconductors, either by means of <a href="http://lmu.web.psi.ch/lem/" target="_top">low-energy &mu;SR</a> in the Meissner state or by conventional &mu;SR in the mixed state. In the following the basic usage of the library in <code>musrfit</code> is explained&mdash;the calculations by themselves are only outlined. For further information please refer to the original literature and/or the source code of the implementation.
<p></p>
<hr />
<strong><font color="#000000">Remark 1:</font></strong> In order to supply certain information needed for the calculations but not suited to be stored in the <code>musrfit</code> msr files an XML configuration file in the working directory is used. For details, see <a href="#XmlFile" class="foswikiCurrentTopicLink">below</a>.
<strong><span class='foswikiBlackFG'>Remark 1:</span></strong> In order to supply certain information needed for the calculations but not suited to be stored in the <code>musrfit</code> msr files an XML configuration file in the working directory is used. For details, see <a href="#XmlFile" class="foswikiCurrentTopicLink">below</a>.
<p></p>
<strong><font color="#000000">Remark 2:</font></strong> The implementations in this library heavily rely on <code><a href="http://www.fftw.org/" target="_top">FFTW3</a></code>. In principle, it always checks what is the best way to do efficient Fourier transforms for a given machine before the transforms are actually done. If repeatedly Fourier transforms of the same (sizable) length should be done, it might be worth storing the once obtained information in an external file and just load it the next time this information is needed (<a href="http://fftw.org/fftw3_doc/Wisdom.html" target="_top">"wisdom handling"</a>). In case this feature shall be used, a valid wisdom file has to be specified in the <a href="#XmlFile" class="foswikiCurrentTopicLink">XML file</a>.
<strong><span class='foswikiBlackFG'>Remark 2:</span></strong> The implementations in this library heavily rely on <code><a href="http://www.fftw.org/" target="_top">FFTW3</a></code>. In principle, it always checks what is the best way to do efficient Fourier transforms for a given machine before the transforms are actually done. If repeatedly Fourier transforms of the same (sizable) length should be done, it might be worth storing the once obtained information in an external file and just load it the next time this information is needed (<a href="http://fftw.org/fftw3_doc/Wisdom.html" target="_top">"wisdom handling"</a>). In case this feature shall be used, a valid wisdom file has to be specified in the <a href="#XmlFile" class="foswikiCurrentTopicLink">XML file</a>.
<p></p>
<strong><font color="#000000">Remark 3:</font></strong> The model functions described in the following do generally not behave nicely in conjunction with <code>MINUIT</code> function minimizations (or maximizations). The analysis process at the moment in most cases involves some tedious <em>trial-and-error</em> procedure, where the displayed <code>MINUIT</code> information as always deserves attention. This is especially true if small effects should be analyzed (e.g. small diamagnetic shifts in superconductors). The parameter uncertainty in many cases has to be estimated independently. Due to these limitations, also the use of the fit option of <code><a href="Msr2Data.html">msr2data</a></code> cannot be advised.
<strong><span class='foswikiBlackFG'>Remark 3:</span></strong> The model functions described in the following do generally not behave nicely in conjunction with <code>MINUIT</code> function minimizations (or maximizations). The analysis process at the moment in most cases involves some tedious <em>trial-and-error</em> procedure, where the displayed <code>MINUIT</code> information as always deserves attention. This is especially true if small effects should be analyzed (e.g. small diamagnetic shifts in superconductors). The parameter uncertainty in many cases has to be estimated independently. Due to these limitations, also the use of the fit option of <code><a href="Msr2Data.html">msr2data</a></code> cannot be advised.
<p></p>
<strong><font color="#000000">Remark 4:</font></strong> If these classes still prove useful and results obtained through them are part of scientific publications,
<strong><span class='foswikiBlackFG'>Remark 4:</span></strong> If these classes still prove useful and results obtained through them are part of scientific publications,
an acknowledgement of the use of the library is appreciated.
<p></p>
<h1><a name="A_2_LE_45SR"></a> 2 LE-&mu;SR </h1>
@ -281,7 +281,7 @@ where <img alt="\mathbf{r}&#61;(x,y)" class="mmpImage" src="../pub/MUSR/LibFitPo
</dd></dl>
Apart from the mentioned analytical models the <strong>numerical Ginzburg-Landau model</strong> <a name="FootNote5text"></a><span class="FootNoteTextLink" title="E.H. Brandt, <a href="http://dx.doi.org/10.1103/PhysRevB.68.054506" target="_top">Phys. Rev. B <strong>68</strong>, 054506 (2003)</a>."><a href="#FootNote5note" class="foswikiCurrentTopicLink">(5)</a></span> is available. In this case <img alt="B(\mathbf{r})" class="mmpImage" src="../pub/MUSR/LibFitPofB/_MathModePlugin_373e9bf1fc97e2c6aacf93bcc090402c.png" title="BofR" /> is obtained by an iterative minimization of the free energy of the vortex lattice.
<p></p>
<font color="#ff0000">Concerning the applicability (e.g. field regions) of each of the mentioned models please refer to the original publications!</font>
<span class='foswikiRedFG'>Concerning the applicability (e.g. field regions) of each of the mentioned models please refer to the original publications!</span>
<p></p>
At the moment, the calculation of the field distribution has been implemented for triangular flux-line lattices. The number of grid lines in which the inter-vortex distance is divided for the calculations to be specified through the <a href="#XmlFile" class="foswikiCurrentTopicLink">XML file</a>.<br>The muon-spin depolarization functions finally are calculated using the following lines in the THEORY block of a <code>musrfit</code> msr file: <dl>
<dt> 2D triangular vortex lattice, London model with Gaussian cutoff </dt><dd> <pre>
@ -328,7 +328,7 @@ The parameters are: <ol>
</li> <li> Ginzburg-Landau coherence length (nm)
</li></ol>
<p></p>
<strong><font color="#000000">Remark:</font></strong> In order to improve the convergence of <code>MIGRAD</code> it has proven useful to use the log-likelihood maximization instead of the &chi;<sup>2</sup> minimization routines and to choose sufficiently large initial steps for the parameters. Calling <code>MINOS</code> in conjunction with these functions is futile.<br>Therefore, the <a href="MusrFit.html#TheCommandsBlock">COMMANDS block</a> of the msr file could look like:
<strong><span class='foswikiBlackFG'>Remark:</span></strong> In order to improve the convergence of <code>MIGRAD</code> it has proven useful to use the log-likelihood maximization instead of the &chi;<sup>2</sup> minimization routines and to choose sufficiently large initial steps for the parameters. Calling <code>MINOS</code> in conjunction with these functions is futile.<br>Therefore, the <a href="MusrFit.html#TheCommandsBlock">COMMANDS block</a> of the msr file could look like:
<pre>
COMMANDS
STRATEGY 0
@ -368,7 +368,7 @@ Notes
<dt> &lt;data_path&gt;DATA_PATH_PREFIX&lt;/data_path&gt; </dt><dd> specify the <strong>DATA_PATH_PREFIX</strong> to the <code>TRIM.SP</code> implantation profiles (inside a &lt;LEM&gt; environment)
</dd> <dt> &lt;N_theory&gt;N_THEORY&lt;/N_theory&gt; </dt><dd> specify the number of points <strong>N_THEORY</strong> for which <i>B</i>(<i>z</i>) is calculated (inside a &lt;LEM&gt; environment)<br>The specification of this number is not needed if the calculation of the inverse of <i>B</i>(<i>z</i>) is implemented!
</dd> <dt> &lt;energy_list&gt;&lt;/energy_list&gt; </dt><dd> set the energies for which <code>TRIM.SP</code> implantation profiles are available (inside a &lt;LEM&gt; environment) <dl>
<dt> &lt;energy_label&gt;LABEL&lt;/energy_label&gt; </dt><dd> specify the <strong>LABEL</strong> within the file name of a available <code>TRIM.SP</code> RGE file (inside a &lt;energy_list&gt; environment)<br><font color="#0000ff">The expected name of the RGE file will be: <strong>DATA_PATH_PREFIX</strong> + <strong>LABEL</strong> + .rge</font>
<dt> &lt;energy_label&gt;LABEL&lt;/energy_label&gt; </dt><dd> specify the <strong>LABEL</strong> within the file name of a available <code>TRIM.SP</code> RGE file (inside a &lt;energy_list&gt; environment)<br><span class='foswikiBlueFG'>The expected name of the RGE file will be: <strong>DATA_PATH_PREFIX</strong> + <strong>LABEL</strong> + .rge</span>
</dd> <dt> &lt;energy&gt;E&lt;/energy&gt; </dt><dd> specify the muon energy <strong>E</strong> (in <strong>keV</strong>) belonging to the <code>TRIM.SP</code> RGE file given above (inside a &lt;energy_list&gt; environment)
</dd></dl>
</dd></dl>
@ -420,39 +420,12 @@ An example XML file looks as follows:
</div>
</div></div><!-- /endWrap -->
<p></p>
<!-- gugus -->
<div id='peopleIcon' onmouseout='$(this).css("visibility","hidden")'>
<img id='peopleIconImg' src='../data/people/information.png'>
</div>
<div id='tooltip'>
<div id='tooltip_inner'>
<table id='tooltip_table'>
<tr>
<td id='tooltip_avatar' rowspan='4'><img id='tooltip_avatar_img' src='../data/people/nobody-100.gif' /></td>
<td id='tooltip_username' colspan='2'>Oscar Fridolin</td>
</tr>
<tr>
<td id='tooltip_tel_title'>Telefon:</td>
<td id='tooltip_tel'>1234512345</td>
</tr>
<tr>
<td id='tooltip_mail_title'>E-Mail:</td>
<td id='tooltip_mail'>oscarfridolin@psi.ch</td>
</tr>
<tr>
<td id='tooltip_office_title'>Büro:</td>
<td id='tooltip_office'>WHGA/019</td>
</tr>
</table>
</div>
</div> <!--1754-->
<p></p>
<p></p>
<p></p>
<p></p>
</body>
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35
doc/html/user/MUSR/LibZFRelaxation.html
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@ -1,7 +1,7 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html lang="en_US">
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@ -21,7 +21,7 @@
<meta name="TEXT_MODIFY_SEARCH" content="Modify search" />
<link rel="icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" /> <link rel="shortcut icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" />
<link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/LibZFRelaxation?t=1333030346" type="application/x-wiki" title="edit LibZFRelaxation" />
<link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/LibZFRelaxation?t=1336454412" type="application/x-wiki" title="edit LibZFRelaxation" />
<meta name="description" content="LibZFRelaxation" />
<base /><!--[if IE]></base><![endif]-->
@ -109,7 +109,7 @@ pre {
</style><![endif]-->
<script src="https://intranet.psi.ch/pub/System/ChecklistPlugin/itemstatechange.js" language="javascript" type="text/javascript"></script><script src="https://intranet.psi.ch/pub/System/TimeTablePlugin/timetabletooltips.js" language="javascript" type="text/javascript"></script><link rel="stylesheet" href="../pub/System/FootNotePlugin/styles.css" type="text/css" media="all" /><!--FOOTNOTEPLUGIN_LINKCSS-->
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@ -225,39 +225,12 @@ The parameters are: <ol>
</div>
</div></div><!-- /endWrap -->
<p></p>
<!-- gugus -->
<div id='peopleIcon' onmouseout='$(this).css("visibility","hidden")'>
<img id='peopleIconImg' src='../data/people/information.png'>
</div>
<div id='tooltip'>
<div id='tooltip_inner'>
<table id='tooltip_table'>
<tr>
<td id='tooltip_avatar' rowspan='4'><img id='tooltip_avatar_img' src='../data/people/nobody-100.gif' /></td>
<td id='tooltip_username' colspan='2'>Oscar Fridolin</td>
</tr>
<tr>
<td id='tooltip_tel_title'>Telefon:</td>
<td id='tooltip_tel'>1234512345</td>
</tr>
<tr>
<td id='tooltip_mail_title'>E-Mail:</td>
<td id='tooltip_mail'>oscarfridolin@psi.ch</td>
</tr>
<tr>
<td id='tooltip_office_title'>Büro:</td>
<td id='tooltip_office'>WHGA/019</td>
</tr>
</table>
</div>
</div> <!--5142-->
<p></p>
<p></p>
<p></p>
<p></p>
</body>
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79
doc/html/user/MUSR/Msr2Data.html
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@ -1,7 +1,7 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
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<!-- Mirrored from intranet.psi.ch/MUSR/Msr2Data?cover=print by HTTrack Website Copier/3.x [XR&CO'2010], Thu, 29 Mar 2012 14:13:02 GMT -->
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@ -21,7 +21,7 @@
<meta name="TEXT_MODIFY_SEARCH" content="Modify search" />
<link rel="icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" /> <link rel="shortcut icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" />
<link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/Msr2Data?t=1333030350" type="application/x-wiki" title="edit Msr2Data" />
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<meta name="description" content="Msr2Data" />
<base /><!--[if IE]></base><![endif]-->
@ -109,7 +109,7 @@ pre {
</style><![endif]-->
<script src="https://intranet.psi.ch/pub/System/ChecklistPlugin/itemstatechange.js" language="javascript" type="text/javascript"></script><script src="https://intranet.psi.ch/pub/System/TimeTablePlugin/timetabletooltips.js" language="javascript" type="text/javascript"></script><link rel="stylesheet" href="../pub/System/FootNotePlugin/styles.css" type="text/css" media="all" /><!--FOOTNOTEPLUGIN_LINKCSS-->
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@ -147,7 +147,7 @@ pre {
<p></p>
Before the usage of msr2data will be explained in greater detail first be aware of the following:
<p></p>
<strong><font color="#ff0000">If using msr2data always bear in mind <a href="#KnownLimitations" class="foswikiCurrentTopicLink">its limitations</a>!</font></strong>
<strong><span class='foswikiRedFG'>If using msr2data always bear in mind <a href="#KnownLimitations" class="foswikiCurrentTopicLink">its limitations</a>!</span></strong>
<p></p>
<p></p>
<p></p>
@ -183,7 +183,7 @@ RUN VAR1 VAR2 VAR3 ...
· · · ·
· · · ·
</pre>
<font color="#ff0000">The first not commented and not empty line determines the parameter names and labels and has to be present!</font><br/>
<span class='foswikiRedFG'>The first not commented and not empty line determines the parameter names and labels and has to be present!</span><br/>
It is allowed to add comments (with a preceding <strong>#</strong>) or empty lines to the run-list file.
<p></p>
The following should be mentioned together with the above examples: <ul>
@ -191,7 +191,7 @@ The following should be mentioned together with the above examples: <ul>
</li> <li> If the files have been newly created, also the <strong>DB</strong> file header is written. If the files were present before, only the data blocks are appended. The output of the header can either be forced or completely suppressed with the <a href="#OptionalParameters" class="foswikiCurrentTopicLink">header and noheader options</a> as shall be seen later.
</li></ul>
<a name="NoExtension"></a> <ul>
<li> <font color="#ff0000">If the <code>musrfit</code> output files do not have an &lt;extension&gt; as specified above like <code><b>8472.msr</b></code> one has to call <code>msr2data</code> like in the following example:</font> <pre class="bash">
<li> <span class='foswikiRedFG'>If the <code>musrfit</code> output files do not have an &lt;extension&gt; as specified above like <code><b>8472.msr</b></code> one has to call <code>msr2data</code> like in the following example:</span> <pre class="bash">
msr2data 8472 8460 &#34;&#34;
</pre>
</li></ul>
@ -232,7 +232,7 @@ Take the <strong>given</strong> msr files <code><b>8472.msr</b></code> through <
<pre class="bash">
msr2data 8472 8475 &#95;tf&#95;h13 msr-8471!
</pre>
Using <code><b>8471_tf_h13.msr</b></code> as template for <em>all</em> runs, <code>msr2data</code> generates the msr input files <code><b>8472_tf_h13.msr</b></code> through <code><b>8475_tf_h13.msr</b></code>. <font color="#ff0000">No fitting will be performed and no DB or ASCII output will be generated!</font>
Using <code><b>8471_tf_h13.msr</b></code> as template for <em>all</em> runs, <code>msr2data</code> generates the msr input files <code><b>8472_tf_h13.msr</b></code> through <code><b>8475_tf_h13.msr</b></code>. <span class='foswikiRedFG'>No fitting will be performed and no DB or ASCII output will be generated!</span>
<p></p>
<a name="TheGlobalMode"></a>
<h1><a name="A_4_The_Global_Mode"></a> 4 The Global Mode </h1>
@ -282,7 +282,7 @@ The example's global FITPARAMETER block would be:<pre>
This shows that the fit parameters are reorganized in a way that the common parameters appear at the beginning of the parameter list and they are followed by copies of the parameters specific to each run (in the specified order!). Additionally, for each specified run new RUN blocks are created&mdash;for each run as many as found for the template run.<br>
During this reorganization all the affected parameter occurrences are changed accordingly!
<p></p>
<font color="#ff0000">Please be aware of the fact that comments in the template msr file are <em>not</em> propagated to the newly generated global msr file!</font>
<span class='foswikiRedFG'>Please be aware of the fact that comments in the template msr file are <em>not</em> propagated to the newly generated global msr file!</span>
<p></p>
<h2><a name="A_4.2_Parameter_Extraction"></a> 4.2 Parameter Extraction </h2>
After fitting some model to the specified data the fit parameters can be extracted from the global msr file to a <strong>DB</strong> or column-structured ASCII file&mdash;as usual this includes also parameters stored in the run data files or externally specified parameters given in a <a href="#RunListStructure" class="foswikiCurrentTopicLink">run-list file</a>.
@ -306,13 +306,13 @@ The single run msr files are not deleted at the moment. The information containe
msr2data 8471 8470 -OneRunFit&#95;example -o OneRunFits.db
</pre>
<p></p>
<font color="#ff0000">Please be aware that the program in this mode always generates new single-run msr files and always calls <code>musrfit</code> for them. In case there are already single-run fits present, these cannot be used in conjunction with this option. The program on purpose behaves in this way in order to ensure the file integrity and correct parameter order within these files.</font>
<span class='foswikiRedFG'>Please be aware that the program in this mode always generates new single-run msr files and always calls <code>musrfit</code> for them. In case there are already single-run fits present, these cannot be used in conjunction with this option. The program on purpose behaves in this way in order to ensure the file integrity and correct parameter order within these files.</span>
<p></p>
<a name="KnownLimitations"></a>
<h1><a name="A_5_Known_Limitations"></a> 5 Known Limitations </h1> <ul>
<li> The indexing run number of the msr file has to be at the begin of every filename.
</li> <li> Within the data file name the <strong>RUN#</strong> has the format <strong>%0Xu</strong>, i.e. <strong>X</strong> digits with leading zeros, and has to be the rightmost number given in this format in the file name. <strong>X</strong> has to be at least 4. The highest treatable run number is 2<sup>32</sup>-1 = 4294967295.
</li> <li> In order to keep <code>msr2data</code> working properly the msr files should only contain <em><font color="#ff0000">one</font> STATISTIC block at the end of the file</em> and <i><font color="#ff0000">one</font> FITPARAMETER block right after the TITLE</i>&mdash;<code>musrfit</code> itself allows to have more creative msr files...
</li> <li> In order to keep <code>msr2data</code> working properly the msr files should only contain <em><span class='foswikiRedFG'>one</span> STATISTIC block at the end of the file</em> and <i><span class='foswikiRedFG'>one</span> FITPARAMETER block right after the TITLE</i>&mdash;<code>musrfit</code> itself allows to have more creative msr files...
</li> <li> The msr-file generation from a template takes only care of runs given on the first line of a RUN block. <a href="MusrFit.html#AddRun">ADDRUN statements</a> are simply copied! Since this is most probably not what one likes to do, it is suggested not to use the <strong>fit-&lt;template&gt;</strong> and <strong>msr-&lt;template&gt;</strong> options if ADDRUN statements were present in the template file.
</li> <li> <code>msr2data</code> will write only up to <em>two successive</em> empty lines in newly generated msr files. In case more subsequent empty lines are encountered in a template file, these are <em>not</em> copied! Actually, this measure is not a limitation but has been introduced to keep the msr files in a reasonable shape.
</li></ul>
@ -321,21 +321,21 @@ msr2data 8471 8470 -OneRunFit&#95;example -o OneRunFits.db
<h1><a name="A_6_The_Graphical_User_Interface_Provided_by_61_61musrgui_61_61_47_61_61musredit_61_61"></a> 6 The Graphical User Interface Provided by <code><b>musrgui</b></code> / <code><b>musredit</b></code> </h1>
<code><a href="MusrGui.html">musrgui/musredit</a></code>, editors designed especially for the manipulation of <code>musrfit</code> msr files and graphical front ends to <code><a href="MusrFit.html">musrfit</a></code>, offer an almost self-explanatory graphical user interface to <code>msr2data</code> depicted below:<br>
<img src="../pub/MUSR/Msr2Data/msr2data-input-tabs.png" alt="msr2data-input-tabs.png" width='612' height='605' align="right" /> <dl>
<dt> <font color="#ff0000">1&ndash;3</font> </dt><dd> Choose one of the <a href="#BasicTypesOfUsage" class="foswikiCurrentTopicLink">ways</a> to specify your list of runs.
</dd> <dt> <font color="#ff0000">4</font> </dt><dd> Give the file extension here, e.g. <strong>_zf</strong> for files like <code><b>8472_zf.msr</b></code>. If the files do not have an extension this field stays empty. <code>musrgui</code> / <code>musredit</code> take care of passing the <strong>""</strong> to <code>msr2data</code> as mentioned <a href="#NoExtension" class="foswikiCurrentTopicLink">above</a>.
</dd> <dt> <font color="#ff0000">5</font> </dt><dd> Activates the <strong>fit-&lt;template&gt;</strong> option if <strong>&lt;template&gt;</strong> is entered. In case the option "Chain Fit" is <em>not</em> set the given template will be used for the input-file generation for <em>all</em> runs to be fitted&mdash;otherwise the output of the first fit serves as template for the second and so on. The template field stays empty if no fits should be performed!
</dd> <dt> <font color="#ff0000">6</font> </dt><dd> Activates the <strong>-o&lt;outputFileName&gt;</strong> option if <strong>&lt;outputFileName&gt;</strong> is entered. If nothing is entered the default output file <code><b>out.db</b></code> or <code><b>out.dat</b></code> is used.
</dd> <dt> <font color="#ff0000">7</font> </dt><dd> If <em>not</em> set, the <strong>noheader</strong> option is passed to <code>msr2data</code>.
</dd> <dt> <font color="#ff0000">8</font> </dt><dd> If set, the <strong>nosummary</strong> option is passed to <code>msr2data</code>.
</dd> <dt> <font color="#ff0000">9</font> </dt><dd> If set, the <strong>-k</strong> option is passed to <code>msr2data</code>.
</dd> <dt> <font color="#ff0000">10</font> </dt><dd> If set, the <strong>data</strong> option is passed to <code>msr2data</code>.
</dd> <dt> <font color="#ff0000">11</font> </dt><dd> If set, the output file is deleted before <code>msr2data</code> is called. Otherwise the data is appended to the file if it existed before <code>msr2data</code> has been called.
</dd> <dt> <font color="#ff0000">12</font> </dt><dd> If set, after processing by <code>msr2data</code> all specified msr files are opened in tabs in <code>musrgui</code> / <code>musredit</code>.
</dd> <dt> <font color="#ff0000">13</font> </dt><dd> If set, the <strong>-t</strong> option is passed to <code>msr2data</code>.
</dd> <dt> <font color="#ff0000">14</font> </dt><dd> If set, <code>msr2data</code> is called with the option <strong>msr-&lt;template&gt;</strong> (instead of <strong>fit-&lt;template&gt;</strong>) and hence is only producing the msr input files without any fitting.
</dd> <dt> <font color="#ff0000">15</font> </dt><dd> If set, <code>msr2data</code> is called with the option <strong>fit</strong>, i.e. no template will be used to generate new msr input files; only existing files are fed to <code>musrfit</code>.
</dd> <dt> <font color="#ff0000">16</font> </dt><dd> If set, <code>msr2data</code> is operating in the <a href="#TheGlobalMode" class="foswikiCurrentTopicLink">global mode</a>.
</dd> <dt> <font color="#ff0000">17</font> </dt><dd> If set, <code>msr2data</code> is operating in the <a href="#GlobalPlus" class="foswikiCurrentTopicLink">extended global mode</a>.
<dt> <span class='foswikiRedFG'>1&ndash;3</span> </dt><dd> Choose one of the <a href="#BasicTypesOfUsage" class="foswikiCurrentTopicLink">ways</a> to specify your list of runs.
</dd> <dt> <span class='foswikiRedFG'>4</span> </dt><dd> Give the file extension here, e.g. <strong>_zf</strong> for files like <code><b>8472_zf.msr</b></code>. If the files do not have an extension this field stays empty. <code>musrgui</code> / <code>musredit</code> take care of passing the <strong>""</strong> to <code>msr2data</code> as mentioned <a href="#NoExtension" class="foswikiCurrentTopicLink">above</a>.
</dd> <dt> <span class='foswikiRedFG'>5</span> </dt><dd> Activates the <strong>fit-&lt;template&gt;</strong> option if <strong>&lt;template&gt;</strong> is entered. In case the option "Chain Fit" is <em>not</em> set the given template will be used for the input-file generation for <em>all</em> runs to be fitted&mdash;otherwise the output of the first fit serves as template for the second and so on. The template field stays empty if no fits should be performed!
</dd> <dt> <span class='foswikiRedFG'>6</span> </dt><dd> Activates the <strong>-o&lt;outputFileName&gt;</strong> option if <strong>&lt;outputFileName&gt;</strong> is entered. If nothing is entered the default output file <code><b>out.db</b></code> or <code><b>out.dat</b></code> is used.
</dd> <dt> <span class='foswikiRedFG'>7</span> </dt><dd> If <em>not</em> set, the <strong>noheader</strong> option is passed to <code>msr2data</code>.
</dd> <dt> <span class='foswikiRedFG'>8</span> </dt><dd> If set, the <strong>nosummary</strong> option is passed to <code>msr2data</code>.
</dd> <dt> <span class='foswikiRedFG'>9</span> </dt><dd> If set, the <strong>-k</strong> option is passed to <code>msr2data</code>.
</dd> <dt> <span class='foswikiRedFG'>10</span> </dt><dd> If set, the <strong>data</strong> option is passed to <code>msr2data</code>.
</dd> <dt> <span class='foswikiRedFG'>11</span> </dt><dd> If set, the output file is deleted before <code>msr2data</code> is called. Otherwise the data is appended to the file if it existed before <code>msr2data</code> has been called.
</dd> <dt> <span class='foswikiRedFG'>12</span> </dt><dd> If set, after processing by <code>msr2data</code> all specified msr files are opened in tabs in <code>musrgui</code> / <code>musredit</code>.
</dd> <dt> <span class='foswikiRedFG'>13</span> </dt><dd> If set, the <strong>-t</strong> option is passed to <code>msr2data</code>.
</dd> <dt> <span class='foswikiRedFG'>14</span> </dt><dd> If set, <code>msr2data</code> is called with the option <strong>msr-&lt;template&gt;</strong> (instead of <strong>fit-&lt;template&gt;</strong>) and hence is only producing the msr input files without any fitting.
</dd> <dt> <span class='foswikiRedFG'>15</span> </dt><dd> If set, <code>msr2data</code> is called with the option <strong>fit</strong>, i.e. no template will be used to generate new msr input files; only existing files are fed to <code>musrfit</code>.
</dd> <dt> <span class='foswikiRedFG'>16</span> </dt><dd> If set, <code>msr2data</code> is operating in the <a href="#TheGlobalMode" class="foswikiCurrentTopicLink">global mode</a>.
</dd> <dt> <span class='foswikiRedFG'>17</span> </dt><dd> If set, <code>msr2data</code> is operating in the <a href="#GlobalPlus" class="foswikiCurrentTopicLink">extended global mode</a>.
</dd></dl>
<p></p>
<a name="BugTracking"></a>
@ -385,39 +385,12 @@ For reporting bugs or requesting new features and improvements please use the <a
</div>
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<tr>
<td id='tooltip_avatar' rowspan='4'><img id='tooltip_avatar_img' src='../data/people/nobody-100.gif' /></td>
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<td id='tooltip_tel_title'>Telefon:</td>
<td id='tooltip_tel'>1234512345</td>
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<td id='tooltip_mail_title'>E-Mail:</td>
<td id='tooltip_mail'>oscarfridolin@psi.ch</td>
</tr>
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<td id='tooltip_office'>WHGA/019</td>
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158
doc/html/user/MUSR/MusrFit.html
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@ -1,7 +1,7 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
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<link rel="stylesheet" href="../pub/System/HeadlinesPlugin/style.css" type="text/css" media="all" />
@ -21,7 +21,7 @@
<meta name="TEXT_MODIFY_SEARCH" content="Modify search" />
<link rel="icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" /> <link rel="shortcut icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" />
<link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/MusrFit?t=1333030349" type="application/x-wiki" title="edit MusrFit" />
<link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/MusrFit?t=1336454417" type="application/x-wiki" title="edit MusrFit" />
<meta name="description" content="MusrFit" />
<base /><!--[if IE]></base><![endif]-->
@ -109,7 +109,7 @@ pre {
</style><![endif]-->
<script src="https://intranet.psi.ch/pub/System/ChecklistPlugin/itemstatechange.js" language="javascript" type="text/javascript"></script><script src="https://intranet.psi.ch/pub/System/TimeTablePlugin/timetabletooltips.js" language="javascript" type="text/javascript"></script><link rel="stylesheet" href="../pub/System/FootNotePlugin/styles.css" type="text/css" media="all" /><!--FOOTNOTEPLUGIN_LINKCSS-->
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@ -156,7 +156,7 @@ pre {
</li> <li> <a href="MusrFit.html#A_5_The_Fit_Types"> 5 The Fit Types </a> <ul>
<li> <a href="MusrFit.html#A_5.1_Single_Histogram_Fit"> 5.1 Single Histogram Fit </a>
</li> <li> <a href="MusrFit.html#A_5.2_Asymmetry_Fit"> 5.2 Asymmetry Fit </a>
</li> <li> <a href="MusrFit.html#A_5.3_Rotating_45Reference_45Frame_Asymmetry_Fit"> 5.3 Rotating-Reference-Frame Asymmetry Fit </a>
</li> <li> <a href="MusrFit.html#A_5.3_Negative_Muon_SR_Fit"> 5.3 Negative Muon &mu;SR Fit </a>
</li> <li> <a href="MusrFit.html#A_5.4_Non_45SR_Fit"> 5.4 Non-&mu;SR Fit </a>
</li></ul>
</li> <li> <a href="MusrFit.html#A_6_User_Functions"> 6 User Functions </a> <ul>
@ -183,6 +183,7 @@ If called from within a shell it accepts several parameters: <dl>
</dd> <dt> -c, --chisq-only </dt><dd> Instead of fitting the model, <code>musrfit</code> calculates &#967;<sup>2</sup> only once and sends the result to the standard output if called with this option. This might be useful for the adjustment of the initial values of the fit parameters.
</dd> <dt> -t, --title-from-data-file </dt><dd> If this option is given <code>musrfit</code> will replace the title in the <strong>&lt;msr_file&gt;</strong> by the run title in the data file of the first run appearing in a RUN block. In case there is no run title in the data file no substitution is done.
</dd> <dt> --dump &lt;type&gt; </dt><dd> is writing a data file with the fit data and the theory; <strong>&lt;type&gt;</strong> can be <strong>ascii</strong> (data in columns) or <strong>root</strong> (data in <code>ROOT</code> histograms)
</dd> <dt> --timeout &lt;timeout_tag&gt; </dt><dd> overwrites the predefined timeout tag 'none'. &lt;timeout_tag&gt;='none' means the timeout facility is not enabled. &lt;timeout_tag&gt; = <code>nn</code> will set the timeout to <code>nn</code> (sec). If during a fit this timeout is reached, <code>musrfit</code> will terminate. This is used to prevent orphan musrfit process to jam the system.
</dd> <dt> --help </dt><dd> displays a small help notice in the shell explaining the basic usage of the program
</dd> <dt> --version </dt><dd> prints the version number of <code>musrfit</code>
</dd></dl>
@ -196,6 +197,7 @@ the fit described in the input file will be executed and the results will be wri
<code>musrview</code> is an interactive graphical user interface for the presentation of the analyzed data and the corresponding fits. If called from within a shell it accepts the following parameters: <dl>
<dt> &lt;msr_file&gt; </dt><dd> name of the msr input or output file to be displayed&mdash;this parameter is mandatory
</dd> <dt> --&lt;graphic_format_extension&gt; </dt><dd> will produce a graphics output file without starting a <code>ROOT</code> session. The filename is based on the name of the <strong>&lt;msr_file&gt;</strong>, e.g. <code><b>8472.msr</b></code> &rarr; <code><b>8472_0.png</b></code> <br> Supported values for <strong>&lt;graphic_format_extension&gt;</strong> are <strong>eps</strong>, <strong>pdf</strong>, <strong>gif</strong>, <strong>jpg</strong>, <strong>png</strong>, <strong>svg</strong>, <strong>xpm</strong>, <strong>root</strong>
</dd> <dt> --timeout &lt;timeout&gt; </dt><dd> &lt;timeout&gt; given in seconds after which <code>musrview</code> terminates. If &lt;timeout&gt; &lt;= 0, no timeout will take place. Default for &lt;timeout&gt; is 0.
</dd> <dt> --help </dt><dd> displays a small help notice in the shell explaining the basic usage of the program
</dd> <dt> --version </dt><dd> prints the version number of <code>musrview</code>
</dd></dl>
@ -228,6 +230,7 @@ Additionally, some functions can be accessed using key-shortcuts: <dl>
<code>musrt0</code> is a user interface for the determination of <strong>t0</strong> and the time windows of <strong>data</strong> and <strong>background</strong> needed to be specified in the <a href="#TheRunBlock" class="foswikiCurrentTopicLink">RUN blocks</a> of the msr file. It can be operated either as an interactive program or in a non-interactive mode. In the non-interactive mode it accepts the following parameters: <dl>
<dt> &lt;msr_file&gt; </dt><dd> name of an msr file
</dd> <dt> -g, --getT0FromPromptPeak [&lt;firstGoodBinOffset&gt;] </dt><dd> tries to estimate <strong>t0</strong> from the <em>prompt peak</em> (maximum entry) in each histogram and writes the corresponding values to the <a href="#TimeZero" class="foswikiCurrentTopicLink">t0 lines</a> in the <a href="#TheRunBlock" class="foswikiCurrentTopicLink">RUN blocks</a> of the msr file. If an optional number <strong>&lt;firstGoodBinOffset&gt;</strong> is given, the lower limit of the <a href="#DataRange" class="foswikiCurrentTopicLink"><b>data</b> range</a> will be set to <strong>t0 + &lt;firstGoodBinOffset&gt;</strong>.
</dd> <dt> --timeout &lt;timeout&gt; </dt><dd> &lt;timeout&gt; given in seconds after which <code>musrview</code> terminates. If &lt;timeout&gt; &lt;= 0, no timeout will take place. Default for &lt;timeout&gt; is 0.
</dd> <dt> --help </dt><dd> displays a small help notice in the shell explaining the basic usage of the program
</dd> <dt> --version </dt><dd> prints the version number of <code>musrt0</code>
</dd></dl>
@ -236,7 +239,7 @@ The interactive mode of <code>musrt0</code> is started if the program is called
<pre class="bash">musrt0 8472.msr</pre>
Then a <code>ROOT</code> canvas depicting the histogram of the data set mentioned first in the <a href="#TheRunBlock" class="foswikiCurrentTopicLink">RUN block</a> is drawn in different colors:<br />
<img src="../pub/MUSR/MusrFit/musrt0.png" alt="musrt0" width='626' height='424' align="center" /><br />
The colors of the data points represent the choice of the time windows of <strong><font color="#0000ff">data (blue)</font></strong> and <strong><font color="#ff0000">background (red)</font></strong>, as well as <strong><font color="#008000">t0 (green line)</font></strong>. In order to change these ranges the mouse cross-hair is moved to a channel of choice and one of the following keys is pressed: <dl>
The colors of the data points represent the choice of the time windows of <strong><span class='foswikiBlueFG'>data (blue)</span></strong> and <strong><span class='foswikiRedFG'>background (red)</span></strong>, as well as <strong><span class='foswikiGreenFG'>t0 (green line)</span></strong>. In order to change these ranges the mouse cross-hair is moved to a channel of choice and one of the following keys is pressed: <dl>
<dt> q </dt><dd> close the currently open histogram and opens the next (see also below)
</dd> <dt> Q </dt><dd> quit <code>musrt0</code> without writing into the msr file
</dd> <dt> z </dt><dd> zoom into the region about the <strong>t0</strong>
@ -271,7 +274,7 @@ Closing a window by clicking the <strong>X</strong> button is equivalent to pres
<dt> &lt;marker&gt;X&lt;/marker&gt; </dt><dd> use the <code>ROOT</code> marker number <strong>X</strong> (inside a &lt;marker_list&gt; environment)
</dd></dl>
</dd> <dt> &lt;color_list&gt;&lt;/color_list&gt; </dt><dd> specify the order in which <code>musrview</code> should use colors when plotting data (inside a &lt;root_settings&gt; environment) <dl>
<dt> &lt;color&gt;<font color="#ff0000">R</font>,<font color="#008000">G</font>,<font color="#0000ff">B</font>&lt;/color&gt; </dt><dd> use the RGB coded color (inside a &lt;color_list&gt; environment)
<dt> &lt;color&gt;<span class='foswikiRedFG'>R</span>,<span class='foswikiGreenFG'>G</span>,<span class='foswikiBlueFG'>B</span>&lt;/color&gt; </dt><dd> use the RGB coded color (inside a &lt;color_list&gt; environment)
</dd></dl>
</dd></dl>
</dd></dl>
@ -379,7 +382,7 @@ Will read the two files <code>'2010/lem10_his_0123.root'</code> and <code>'2010/
<h1><a name="A_3_Auxiliary_Programs"></a> 3 Auxiliary Programs </h1>
Additionally to the programs mentioned above editor front ends called <code><a href="MusrGui.html">musrgui/musredit</a></code> and another tool named <code><a href="Msr2Data.html">msr2data</a></code> are available. The purpose of <code>msr2data</code> is to process multiple msr files with the same parameters and to summarize the fitting results either in a <strong>DB</strong> or a <strong>column ASCII</strong> file. Also, new msr files can be generated from a template. For details refer to its <a href="Msr2Data.html">manual</a>.
<p></p>
<strong><font color="#ff0000">Before going to use <code>musrgui</code> / <code>musredit</code> it is strongly recommended to read this manual first!</font></strong>
<strong><span class='foswikiRedFG'>Before going to use <code>musrgui</code> / <code>musredit</code> it is strongly recommended to read this manual first!</span></strong>
<p></p>
<a name="DescriptionOfTheMsrFileFormat"></a>
<h1><a name="A_4_Description_of_the_msr_File_Format"></a> 4 Description of the msr File Format </h1>
@ -455,140 +458,146 @@ The THEORY block is used to define the fit function. There is a set of predefine
<th class="foswikiTableCol1"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/MusrFit?cover=print;sortcol=1;table=1;up=0#sorted_table" title="Sort by this column">abbreviation</a> </th>
<th class="foswikiTableCol2"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/MusrFit?cover=print;sortcol=2;table=1;up=0#sorted_table" title="Sort by this column">parameters</a> </th>
<th class="foswikiTableCol3"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/MusrFit?cover=print;sortcol=3;table=1;up=0#sorted_table" title="Sort by this column">mathematical expression</a> </th>
<th rowspan="5" class="foswikiTableCol4 foswikiLastCol"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/MusrFit?cover=print;sortcol=4;table=1;up=0#sorted_table" title="Sort by this column">reference</a> </th>
<th rowspan="6" class="foswikiTableCol4 foswikiLastCol"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/MusrFit?cover=print;sortcol=4;table=1;up=0#sorted_table" title="Sort by this column">reference</a> </th>
</tr>
</thead>
<tbody>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> const </td>
<td class="foswikiTableCol1"> c </td>
<td class="foswikiTableCol2"> <img alt="\mathrm{const}\,(1)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_819a4fe998dacad865a00b643564873e.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\mathrm{const}" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_b2a023c64c8d8b460f929d404730ec8a.png" /> </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<td class="foswikiTableCol0 foswikiFirstCol"> asymmetry </td>
<td class="foswikiTableCol1"> a </td>
<td class="foswikiTableCol2"> <img alt="A\,(1)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_facd1d42ae8b62aa1043316d525d3af4.png" /> </td>
<td class="foswikiTableCol3"> <img alt="A" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_be8817308ad9fe2fa99fe00abdaba828.png" /> </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> simplExpo </td>
<td class="foswikiTableCol1"> se </td>
<td class="foswikiTableCol2"> <img alt="\lambda\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_020e973cf5b1293c76cb3ecef5a269f8.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\exp\left(-\lambda t\right)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_6a34fe0c88c79d8a90defad81f36da6d.png" /> </td>
</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<td class="foswikiTableCol0 foswikiFirstCol"> generExpo </td>
<td class="foswikiTableCol1"> ge </td>
<td class="foswikiTableCol2"> <img alt="\lambda\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_020e973cf5b1293c76cb3ecef5a269f8.png" />, <img alt="\beta\,(1)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_aad467dd15ac57481f24ada5fbe5d85f.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\exp\left&#91;-\left(\lambda t\right)^{\beta}\right]" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_8b46c96933bc8a754fde5aa613d0e806.png" /> </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> simpleGss </td>
<td class="foswikiTableCol1"> sg </td>
<td class="foswikiTableCol2"> <img alt="\sigma\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_6b6bbc4add4da0bde8220c54594658f3.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\exp\left&#91;-\frac{1}{2}\left(\sigma t\right)^2\right]" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_d284ec460bdb1abb64e7f9156d87d659.png" /> </td>
</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<td class="foswikiTableCol0 foswikiFirstCol"> statGssKT </td>
<td class="foswikiTableCol1"> stg </td>
<td class="foswikiTableCol2"> <img alt="\sigma\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_6b6bbc4add4da0bde8220c54594658f3.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\frac{1}{3} + \frac{2}{3} \left&#91;1-(\sigma t)^2\right] \exp\left&#91;-\frac{1}{2}\left(\sigma t\right)^2\right]" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_1f1b2becd9ba1bee3b5d7f897bd8db7e.png" /> </td>
<td class="foswikiTableCol4 foswikiLastCol"> <img src="../pub/Main/SmiliesPluginPSI/skull.gif" alt="dead!" title="dead!" border="0" /> </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> statGssKTLF </td>
<td class="foswikiTableCol1"> sgktlf </td>
<td class="foswikiTableCol2"> <img alt="\nu\,(\mathrm{MHz})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_7188605a647615e4fb92cc89274b22a0.png" />, <img alt="\sigma\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_6b6bbc4add4da0bde8220c54594658f3.png" /> </td>
<td class="foswikiTableCol3"> <img alt="G&#95;{\mathrm{G,LF}}(t) \equiv 1-\frac{2\sigma^2}{(2\pi\nu)^2}\left&#91;1-\exp\left(-\frac{1}{2}\sigma^2t^2\right)\cos(2\pi\nu t)\right]+\frac{2\sigma^4}{(2\pi\nu)^3}\int^t&#95;0 \exp\left(-\frac{1}{2}\sigma^2\tau^2\right)\sin(2\pi\nu\tau)\mathrm{d}\tau" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_e9a0c0aa5d84cb4ea67265a3b06b9af5.png" /> </td>
<td class="foswikiTableCol4 foswikiLastCol"> <a name="FootNote3text"></a><span class="FootNoteTextLink" title=" R. S. Hayano <em>et al.</em>, <a href="http://link.aps.org/doi/10.1103/PhysRevB.20.850" target="_top">Phys. Rev. B <strong>20</strong> (1979) 850</a> "><a href="#FootNote3note" class="foswikiCurrentTopicLink">(4)</a></span> </td>
</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<td class="foswikiTableCol0 foswikiFirstCol"> dynGssKTLF </td>
<td class="foswikiTableCol1"> dgktlf </td>
<td class="foswikiTableCol2"> <img alt="\nu\,(\mathrm{MHz})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_7188605a647615e4fb92cc89274b22a0.png" />, <img alt="\sigma\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_6b6bbc4add4da0bde8220c54594658f3.png" />, <img alt="\Gamma\,(\mathrm{MHz})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_f87b1352f663a35bf263bc7e9a214ca3.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\frac{1}{2\pi \imath}\int&#95;{\gamma-\imath\infty}^{\gamma+\imath\infty} \frac{f&#95;{\mathrm{G}}(s+\Gamma)}{1-\Gamma f&#95;{\mathrm{G}}(s+\Gamma)} \exp(s t) \mathrm{d}s,\mathrm{where}\,f&#95;{\mathrm{G}}(s)\equiv \int&#95;0^{\infty}G&#95;{\mathrm{G,LF}}(t)\exp(-s t) \mathrm{d}t" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_cb688f85a062f09bfaff5cf9144860a9.png" /> </td>
<td class="foswikiTableCol4 foswikiLastCol"> <a name="FootNote4text"></a><span class="FootNoteTextLink" title=" R. S. Hayano <em>et al.</em>, <a href="http://link.aps.org/doi/10.1103/PhysRevB.20.850" target="_top">Phys. Rev. B <strong>20</strong> (1979) 850</a>; P. Dalmas de R&eacute;otier and A. Yaouanc, <a href="http://dx.doi.org/10.1088/0953-8984/4/18/020" target="_top">J. Phys.: Condens. Matter <strong>4</strong> (1992) 4533</a>; A. Keren, <a href="http://link.aps.org/doi/10.1103/PhysRevB.50.10039" target="_top">Phys. Rev. B <strong>50</strong> (1994) 10039</a> "><a href="#FootNote4note" class="foswikiCurrentTopicLink">(5)</a></span> </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> statExpKT </td>
<td class="foswikiTableCol1"> sekt </td>
<td class="foswikiTableCol2"> <img alt="\lambda\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_020e973cf5b1293c76cb3ecef5a269f8.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\frac{1}{3} + \frac{2}{3} \left&#91;1-\lambda t\right] \exp\left(-\lambda t\right)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_6466a97e4b7c510909bffce51d31c4b9.png" /> </td>
<td class="foswikiTableCol4 foswikiLastCol"> <a name="FootNote5text"></a><span class="FootNoteTextLink" title=" Y. J. Uemura <em>et al.</em>, <a href="http://link.aps.org/doi/10.1103/PhysRevB.31.546" target="_top">Phys. Rev. B <strong>31</strong> (1985) 546</a> "><a href="#FootNote5note" class="foswikiCurrentTopicLink">(6)</a></span> </td>
</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<td class="foswikiTableCol0 foswikiFirstCol"> statExpKTLF </td>
<td class="foswikiTableCol1"> sektlf </td>
<td class="foswikiTableCol2"> <img alt="\nu\,(\mathrm{MHz})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_7188605a647615e4fb92cc89274b22a0.png" />, <img alt="a\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_26a5ae8799badcc3bcbe1823265a9053.png" /> </td>
<td class="foswikiTableCol3"> <img alt="1-\frac{a}{2\pi\nu}j&#95;1(2\pi\nu t)\exp\left(-at\right)-\left(\frac{a}{2\pi\nu}\right)^2 \left&#91;j&#95;0(2\pi\nu t)\exp\left(-at\right)-1\right]-a\left&#91;1+\left(\frac{a}{2\pi\nu}\right)^2\right]\int^t&#95;0 \exp\left(-a\tau\right)j&#95;0(2\pi\nu\tau)\mathrm{d}\tau \equiv G&#95;{\mathrm{L,LF}}(t)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_df4770dd7b14577f14410b4f7ab59721.png" /> </td>
<td class="foswikiTableCol4 foswikiLastCol"> <a name="FootNote6text"></a><span class="FootNoteTextLink" title=" Y. J. Uemura <em>et al.</em>, <a href="http://link.aps.org/doi/10.1103/PhysRevB.31.546" target="_top">Phys. Rev. B <strong>31</strong> (1985) 546</a> "><a href="#FootNote6note" class="foswikiCurrentTopicLink">(7)</a></span> </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> dynExpKTLF </td>
<td class="foswikiTableCol1"> dektlf </td>
<td class="foswikiTableCol2"> <img alt="\nu\,(\mathrm{MHz})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_7188605a647615e4fb92cc89274b22a0.png" />, <img alt="a\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_26a5ae8799badcc3bcbe1823265a9053.png" />, <img alt="\Gamma\,(\mathrm{MHz})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_f87b1352f663a35bf263bc7e9a214ca3.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\frac{1}{2\pi \imath}\int&#95;{\gamma-\imath\infty}^{\gamma+\imath\infty} \frac{f&#95;{\mathrm{L}}(s+\Gamma)}{1-\Gamma f&#95;{\mathrm{L}}(s+\Gamma)} \exp(s t) \mathrm{d}s,\mathrm{where}\,f&#95;{\mathrm{L}}(s)\equiv \int&#95;0^{\infty}G&#95;{\mathrm{L,LF}}(t)\exp(-s t) \mathrm{d}t" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_c5c6dea10611dae1d470a5615869073a.png" /> </td>
<td class="foswikiTableCol4 foswikiLastCol"> <a name="FootNote7text"></a><span class="FootNoteTextLink" title=" R. S. Hayano <em>et al.</em>, <a href="http://link.aps.org/doi/10.1103/PhysRevB.20.850" target="_top">Phys. Rev. B <strong>20</strong> (1979) 850</a>; P. Dalmas de R&eacute;otier and A. Yaouanc, <a href="http://dx.doi.org/10.1088/0953-8984/4/18/020" target="_top">J. Phys.: Condens. Matter <strong>4</strong> (1992) 4533</a> "><a href="#FootNote7note" class="foswikiCurrentTopicLink">(8)</a></span> </td>
</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<td class="foswikiTableCol0 foswikiFirstCol"> combiLGKT </td>
<td class="foswikiTableCol1"> lgkt </td>
<td class="foswikiTableCol2"> <img alt="\lambda\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_020e973cf5b1293c76cb3ecef5a269f8.png" />, <img alt="\sigma\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_6b6bbc4add4da0bde8220c54594658f3.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\frac{1}{3}+\frac{2}{3}\left(1-\sigma^2 t^2-\lambda t\right)\exp\left(-\frac{\sigma^2t^2}{2}-\lambda t\right)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_95da508ef32b516260a14999eaf14f46.png" /> </td>
<td class="foswikiTableCol4 foswikiLastCol"> <img src="../pub/Main/SmiliesPluginPSI/skull.gif" alt="dead!" title="dead!" border="0" /> </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> spinGlass </td>
<td class="foswikiTableCol1"> spg </td>
<td class="foswikiTableCol2"> <img alt="\lambda\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_020e973cf5b1293c76cb3ecef5a269f8.png" />, <img alt="\gamma\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_8aad0e0c2c1f20995c483933a896ca0d.png" />, <img alt="q\,(1)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_16b8c518c1e529e6c963929287ef3a56.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\frac{1}{3}\exp\left(-\sqrt{\frac{4\lambda^2(1-q)t}{\gamma}}\right)+\frac{2}{3}\left(1-\frac{q\lambda^2t^2}{\sqrt{\frac{4\lambda^2(1-q)t}{\gamma}+q\lambda^2t^2}}\right)\exp\left(-\sqrt{\frac{4\lambda^2(1-q)t}{\gamma}+q\lambda^2t^2}\right)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_e35c4217aa50607f25e6eadf9f27f874.png" /> </td>
<td class="foswikiTableCol4 foswikiLastCol"> <img src="../pub/Main/SmiliesPluginPSI/skull.gif" alt="dead!" title="dead!" border="0" /> </td>
</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<td class="foswikiTableCol0 foswikiFirstCol"> rdAnisoHf </td>
<td class="foswikiTableCol1"> rahf </td>
<td class="foswikiTableCol2"> <img alt="\nu\,(\mathrm{MHz})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_7188605a647615e4fb92cc89274b22a0.png" />, <img alt="\lambda\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_020e973cf5b1293c76cb3ecef5a269f8.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\frac{1}{6}\left(1-\frac{\nu t}{2}\right)\exp\left(-\frac{\nu t}{2}\right)+\frac{1}{3}\left(1-\frac{\nu t}{4}\right)\exp\left(-\frac{\nu t + 2.44949\lambda t}{4}\right)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_f91ff8255a7b8a99c5eefcb2c29f9262.png" /> </td>
<td class="foswikiTableCol4 foswikiLastCol"> <a name="FootNote8text"></a><span class="FootNoteTextLink" title=" R. E. Turner and D. R. Harshman, <a href="http://link.aps.org/doi/10.1103/PhysRevB.34.4467" target="_top">Phys. Rev. B <strong>34</strong> (1986) 4467</a> "><a href="#FootNote8note" class="foswikiCurrentTopicLink">(9)</a></span> </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> TFieldCos </td>
<td class="foswikiTableCol1"> tf </td>
<td class="foswikiTableCol2"> <img alt="\varphi\,(^{\circ})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_61136f20673ad20f955c43e43b8cec9d.png" />, <img alt="\nu\,(\mathrm{MHz})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_7188605a647615e4fb92cc89274b22a0.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\cos\left(2\pi\nu t+\frac{\pi\varphi}{180}\right)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_51757d805f7111ffe6e0b430b6d137c7.png" /> </td>
<td class="foswikiTableCol4 foswikiLastCol"> <img src="../pub/Main/SmiliesPluginPSI/skull.gif" alt="dead!" title="dead!" border="0" /> </td>
</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<td class="foswikiTableCol0 foswikiFirstCol"> internFld </td>
<td class="foswikiTableCol1"> if </td>
<td class="foswikiTableCol2"> <img alt="\alpha\,(1)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_f266f29ff7212b8d77bf67567eac1fd3.png" />, <img alt="\varphi\,(^{\circ})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_61136f20673ad20f955c43e43b8cec9d.png" />, <img alt="\nu\,(\mathrm{MHz})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_7188605a647615e4fb92cc89274b22a0.png" />, <img alt="\lambda&#95;{\mathrm{T}}\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_49046b617890ffeaca8bc16ae66d0dc5.png" />, <img alt="\lambda&#95;{\mathrm{L}}\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_b0c4a8cbbcf4189b64418b381939a979.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\alpha\,\cos\left(2\pi\nu t+\frac{\pi\varphi}{180}\right)\exp\left(-\lambda&#95;{\mathrm{T}}t\right)+(1-\alpha)\,\exp\left(-\lambda&#95;{\mathrm{L}}t\right)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_1582d158c5651581ca9e800ee698ce9f.png" /> </td>
<td class="foswikiTableCol4 foswikiLastCol"> <img src="../pub/Main/SmiliesPluginPSI/skull.gif" alt="dead!" title="dead!" border="0" /> </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> Bessel </td>
<td class="foswikiTableCol1"> b </td>
<td class="foswikiTableCol2"> <img alt="\varphi\,(^{\circ})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_61136f20673ad20f955c43e43b8cec9d.png" />, <img alt="\nu\,(\mathrm{MHz})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_7188605a647615e4fb92cc89274b22a0.png" /> </td>
<td class="foswikiTableCol3"> <img alt="j&#95;0\left(2\pi\nu t+\frac{\pi\varphi}{180}\right)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_cff60a46de8608e97a33bbae7c4e566d.png" /> </td>
<td class="foswikiTableCol4 foswikiLastCol"> <img src="../pub/Main/SmiliesPluginPSI/skull.gif" alt="dead!" title="dead!" border="0" /> </td>
</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<td class="foswikiTableCol0 foswikiFirstCol"> internBsl </td>
<td class="foswikiTableCol1"> ib </td>
<td class="foswikiTableCol2"> <img alt="\alpha\,(1)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_f266f29ff7212b8d77bf67567eac1fd3.png" />, <img alt="\varphi\,(^{\circ})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_61136f20673ad20f955c43e43b8cec9d.png" />, <img alt="\nu\,(\mathrm{MHz})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_7188605a647615e4fb92cc89274b22a0.png" />, <img alt="\lambda&#95;{\mathrm{T}}\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_49046b617890ffeaca8bc16ae66d0dc5.png" />, <img alt="\lambda&#95;{\mathrm{L}}\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_b0c4a8cbbcf4189b64418b381939a979.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\alpha\,j&#95;0\left(2\pi\nu t+\frac{\pi\varphi}{180}\right)\exp\left(-\lambda&#95;{\mathrm{T}}t\right)+(1-\alpha)\,\exp\left(-\lambda&#95;{\mathrm{L}}t\right)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_23ec8fc398b4e415b86bbd2b65f9a63c.png" /> </td>
<td class="foswikiTableCol4 foswikiLastCol"> <img src="../pub/Main/SmiliesPluginPSI/skull.gif" alt="dead!" title="dead!" border="0" /> </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> abragam </td>
<td class="foswikiTableCol1"> ab </td>
<td class="foswikiTableCol2"> <img alt="\sigma\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_6b6bbc4add4da0bde8220c54594658f3.png" />, <img alt="\gamma\,(\mathrm{MHz})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_ebef6cda2881306e993839c1b4bcaa4c.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\exp\left&#91;-\frac{\sigma^2}{\gamma^2}\left(e^{-\gamma t}-1+\gamma t\right)\right]" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_e56be15b7e230ec52a9f6632e552ca4b.png" /> </td>
<td class="foswikiTableCol4 foswikiLastCol"> <img src="../pub/Main/SmiliesPluginPSI/skull.gif" alt="dead!" title="dead!" border="0" /> </td>
<td class="foswikiTableCol4"> <img src="../pub/Main/SmiliesPluginPSI/skull.gif" alt="dead!" title="dead!" border="0" /> </td>
</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<td class="foswikiTableCol0 foswikiFirstCol"> skewedGss </td>
<td class="foswikiTableCol1"> skg </td>
<td class="foswikiTableCol2"> <img alt="\varphi\,(^{\circ})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_61136f20673ad20f955c43e43b8cec9d.png" />, <img alt="\nu\,(\mathrm{MHz})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_7188605a647615e4fb92cc89274b22a0.png" />, <img alt="\sigma&#95;{-}\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_bd5c765027d46aa1433dda03f540c17e.png" />, <img alt="\sigma&#95;{+}\,(\mu\text{s}^{-1})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_82adbab00b6a057f04037b44746e33eb.png" /> </td>
<td class="foswikiTableCol3"> <img alt="\frac{\sigma&#95;{-}}{\sigma&#95;{+}+\sigma&#95;{-}}\exp\left&#91;-\frac{\sigma&#95;{-}^2t^2}{2}\right]\left\lbrace\cos\left(2\pi\nu t+\frac{\pi\varphi}{180}\right)+\sin\left(2\pi\nu t+\frac{\pi\varphi}{180}\right)\mathrm{Erfi}\left(\frac{\sigma&#95;{-}t}{\sqrt{2}}\right)\right\rbrace+ \frac{\sigma&#95;{+}}{\sigma&#95;{+}+\sigma&#95;{-}}\exp\left&#91;-\frac{\sigma&#95;{+}^2t^2}{2}\right]\left\lbrace\cos\left(2\pi\nu t+\frac{\pi\varphi}{180}\right)-\sin\left(2\pi\nu t+\frac{\pi\varphi}{180}\right)\mathrm{Erfi}\left(\frac{\sigma&#95;{+}t}{\sqrt{2}}\right)\right\rbrace" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_7f4cd42199fbf712ad5a86f9d94bd698.png" /> </td>
<td class="foswikiTableCol4"> <a href="http://nemu.web.psi.ch/doc/LEM_Memo/skewedGaussian/skewedGaussian.pdf" target="_top">memo</a> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/pdf.png" width="16" height="16" alt="pdf" /></span> </td>
<td class="foswikiTableCol4 foswikiLastCol"> <a href="http://nemu.web.psi.ch/doc/LEM_Memo/skewedGaussian/skewedGaussian.pdf" target="_top">memo</a> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/pdf.png" width="16" height="16" alt="pdf" /></span> </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol foswikiLast"> polynom </td>
<td class="foswikiTableCol1 foswikiLast"> p </td>
<td class="foswikiTableCol2 foswikiLast"> <img alt="t&#95;0\,(&#91;t])" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_20651e8230c7eb66c452bb1f01dc4633.png" />, <img alt="a&#95;0\,(1),\,a&#95;1\,(1),\,\dots,\,a&#95;{n}\,(1)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_03095d51eca2bcb1dda113e995238fc0.png" /> </td>
@ -743,7 +752,7 @@ The RUN block is used to collect the data needed for a particular run to be fitt
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted1 foswikiTableRowdataBg1">
<td class="foswikiTableCol0 foswikiFirstCol foswikiLast"> &lt;file_format&gt; </td>
<td class="foswikiTableCol1 foswikiLastCol foswikiLast"> file format: NEXUS, ROOT-NPP, ROOT-PPC, PSI-BIN, PSI-MDU, WKM, MUD, MDU-ASCII, ASCII, DB </td>
<td class="foswikiTableCol1 foswikiLastCol foswikiLast"> file format: MUSR-ROOT, NEXUS, ROOT-NPP, ROOT-PPC, PSI-BIN, PSI-MDU, WKM, MUD, MDU-ASCII, ASCII, DB </td>
</tr>
</tbody></table>
<p></p>
@ -779,7 +788,7 @@ In order to describe the operations needed for fitting and plotting, quite some
<a name="AddRun"></a> <dl>
<dt> ADDRUN &lt;run_file_name&gt; &lt;beamline&gt; &lt;facility&gt; &lt;file_format&gt; (optional) </dt><dd> If an ADDRUN is just following after a RUN statement, these runs will be added. More than one ADDRUN statements are possible, i.e. adding up as many runs as wished. It is also possible to add runs with different file formats. If the t0's are given in the data files, the ADDRUN statement is all what is needed, otherwise just add the t0's with the <a href="#AddTimeZero" class="foswikiCurrentTopicLink">addt0</a> statement.<br>
</dd></dl>
For a 'Single Histogram Fit' it will be <pre>
For a 'Single Histogram Fit' or a 'MuMinus Fit' it will be <pre>
addt0 t0AddRun1
addt0 t0AddRun2
etc.
@ -793,17 +802,14 @@ etc.
<dt> fittype (required) </dt><dd> This tag is used to indicate which type of fit is wished. The supported fit types are: <dl>
<dt> 0 </dt><dd> Single Histogram Fit
</dd> <dt> 2 </dt><dd> Asymmetry Fit
</dd> <dt> 4 </dt><dd> Asymmetry Fit in a Rotating Reference Frame (Fitting is actually never going to be supported; eventually, it will be possible to plot data in a rotating reference frame)
</dd> <dt> 4 </dt><dd> MuMinus Fit. This is a single histogram fit especially for negative muon &mu;SR
</dd> <dt> 8 </dt><dd> Non-&mu;SR Fit
</dd></dl>
</dd></dl>
<p></p>
The description of these fit types can be found in <a href="#TheFitTypes" class="foswikiCurrentTopicLink">the corresponding section</a>.
<p></p> <dl>
<dt> alpha, beta (fit types 2, 4) </dt><dd> These parameters are used to correct the asymmetry for different detector efficiencies, solid angles and initial asymmetries. They are defined as &#945;&#8801;<i>N</i><sub>0,b</sub>/<i>N</i><sub>0,f</sub> and &#946;&#8801;&#124;<i>A</i><sub>0,b</sub>/<i>A</i><sub>0,f</sub>&#124;. If the parameters are not specified in the RUN block, for each one the value of 1 is assumed.
</dd></dl>
<p></p> <dl>
<dt> alpha2, beta2 (fit type 4) </dt><dd> &alpha; and &beta; parameters for the calculation of the asymmetry of the second pair of detectors for a plot in a rotating reference frame.
<dt> alpha, beta (fit types 2) </dt><dd> These parameters are used to correct the asymmetry for different detector efficiencies, solid angles and initial asymmetries. They are defined as &#945;&#8801;<i>N</i><sub>0,b</sub>/<i>N</i><sub>0,f</sub> and &#946;&#8801;&#124;<i>A</i><sub>0,b</sub>/<i>A</i><sub>0,f</sub>&#124;. If the parameters are not specified in the RUN block, for each one the value of 1 is assumed.
</dd></dl>
<p></p>
<a name="NormFun"></a> <dl>
@ -824,14 +830,14 @@ etc.
</dd></dl>
<p></p>
<a name="ForwardHisto"></a> <dl>
<dt> forward (fit type 0) </dt><dd> Number of the histogram in the data file to be processed. If histograms shall be grouped, all the numbers which shall be grouped. Examples: <pre>
<dt> forward (fit type 0, 4) </dt><dd> Number of the histogram in the data file to be processed. If histograms shall be grouped, all the numbers which shall be grouped. Examples: <pre>
forward 3 # no grouping, take histogram number 3
forward 1 2 # group histogram number 1 and 2
forward 1-10 12 # group histograms with numbers from 1 to 10 and additionally histogram 12
</pre>
</dd></dl>
<p></p> <dl>
<dt> forward, backward (fit types 2, 4) </dt><dd> Numbers of the histograms in the data file that should be taken to calculate the asymmetry. If histograms shall be grouped, all the numbers which shall be grouped. Examples: <pre>
<dt> forward, backward (fit types 2) </dt><dd> Numbers of the histograms in the data file that should be taken to calculate the asymmetry. If histograms shall be grouped, all the numbers which shall be grouped. Examples: <pre>
# build forward/backward asymmetry with histogram 1 and 3
forward 1
backward 3
@ -844,45 +850,45 @@ etc.
</pre>
</dd></dl>
<p></p> <dl>
<dt> backgr.fix (fit types 0, 2, 4) </dt><dd> A fixed constant background in counts per nanosecond or per bin (see <a href="#ScaleNzero" class="foswikiCurrentTopicLink">below</a>) may be given at this point. The background is specified for all histograms in the order <i>B</i><sub>f</sub> <i>B</i><sub>b</sub> [<i>B</i><sub>r</sub> <i>B</i><sub>l</sub>]. If this keyword is present, any information on a <strong>background</strong> line is ignored.
<dt> backgr.fix (fit types 0, 2) </dt><dd> A fixed constant background in counts per nanosecond or per bin (see <a href="#ScaleNzero" class="foswikiCurrentTopicLink">below</a>) may be given at this point. The background is specified for all histograms in the order <i>B</i><sub>f</sub> <i>B</i><sub>b</sub> [<i>B</i><sub>r</sub> <i>B</i><sub>l</sub>]. If this keyword is present, any information on a <strong>background</strong> line is ignored.
</dd></dl>
<p></p> <dl>
<dt> background (fit type 0) </dt><dd> The numbers of the first and the last channel of an interval from which the constant background should be calculated are specified here. In case histograms are being grouped, the specified channels are interpreted with respect to the first histogram.
</dd></dl>
<p></p> <dl>
<dt> background (fit types 2, 4) </dt><dd> The numbers of the first and the last channel of an interval from which the constant background should be calculated are specified here. For all the histograms this is done together in the following order: <i>k</i><sub>f,first</sub> <i>k</i><sub>f,last</sub> <i>k</i><sub>b,first</sub> <i>k</i><sub>b,last</sub> [<i>k</i><sub>r,first</sub> <i>k</i><sub>r,last</sub> <i>k</i><sub>l,first</sub> <i>k</i><sub>l,last</sub>]. In case histograms are being grouped, the specified channels are interpreted with respect to the first histograms.
<dt> background (fit types 2) </dt><dd> The numbers of the first and the last channel of an interval from which the constant background should be calculated are specified here. For all the histograms this is done together in the following order: <i>k</i><sub>f,first</sub> <i>k</i><sub>f,last</sub> <i>k</i><sub>b,first</sub> <i>k</i><sub>b,last</sub> [<i>k</i><sub>r,first</sub> <i>k</i><sub>r,last</sub> <i>k</i><sub>l,first</sub> <i>k</i><sub>l,last</sub>]. In case histograms are being grouped, the specified channels are interpreted with respect to the first histograms.
</dd></dl>
<p></p>
<a name="DataRange"></a> <dl>
<dt> data (fit type 0) </dt><dd> The numbers of the first and the last channel of an interval from which the data is taken are specified here. In case histograms are being grouped, the specified channels are interpreted with respect to the first histogram.
<dt> data (fit type 0, 4) </dt><dd> The numbers of the first and the last channel of an interval from which the data is taken are specified here. In case histograms are being grouped, the specified channels are interpreted with respect to the first histogram.
</dd></dl>
<p></p> <dl>
<dt> data (fit types 2, 4) </dt><dd> The numbers of the first and the last channel of an interval from which the data is taken are specified here. For all the histograms this is done together in the following order: <i>k</i><sub>f,first</sub> <i>k</i><sub>f,last</sub> <i>k</i><sub>b,first</sub> <i>k</i><sub>b,last</sub> [<i>k</i><sub>r,first</sub> <i>k</i><sub>r,last</sub> <i>k</i><sub>l,first</sub> <i>k</i><sub>l,last</sub>]. In case histograms are being grouped, the specified channels are interpreted with respect to the first histograms.
<dt> data (fit types 2) </dt><dd> The numbers of the first and the last channel of an interval from which the data is taken are specified here. For all the histograms this is done together in the following order: <i>k</i><sub>f,first</sub> <i>k</i><sub>f,last</sub> <i>k</i><sub>b,first</sub> <i>k</i><sub>b,last</sub> [<i>k</i><sub>r,first</sub> <i>k</i><sub>r,last</sub> <i>k</i><sub>l,first</sub> <i>k</i><sub>l,last</sub>]. In case histograms are being grouped, the specified channels are interpreted with respect to the first histograms.
</dd></dl>
<a name="TimeZero"></a> <dl>
<dt> t0 (fit type 0) </dt><dd> The number of the time-zero channel of the histogram. Example: <pre>
<dt> t0 (fit type 0, 4) </dt><dd> The number of the time-zero channel of the histogram. Example: <pre>
t0 3419 # t0 channel &#61; 3419
t0 3419 3434 # t0 channels for groupings: forward f1 f2. 3419 t0 for f1, 3434 t0 for f2.
</pre>
</dd></dl>
<p></p> <dl>
<dt> t0 (fit types 2, 4) </dt><dd> The numbers of time-zero channels of the histograms in the order <i>t</i><sub>0,f</sub> <i>t</i><sub>0,b</sub>. Example: <pre>
<dt> t0 (fit types 2) </dt><dd> The numbers of time-zero channels of the histograms in the order <i>t</i><sub>0,f</sub> <i>t</i><sub>0,b</sub>. Example: <pre>
t0 3419 3418 # t0 channels: forward (3419), backward (3418)
t0 3419 3418 3417 3416 # t0 channels (assuming forward f1 f2, backward b1 b2): forward (3419, f1), backward (3418, b1); forward (3417, f2), backward (3416, b2)
</pre>
</dd></dl>
<p></p>
<a name="AddTimeZero"></a> <dl>
<dt> addt0 (fit type 0) </dt><dd> The number of the time-zero channel of the histogram. If grouping of histograms is present (see <a href="#ForwardHisto" class="foswikiCurrentTopicLink">forward</a>) the same syntax as for <a href="#TimeZero" class="foswikiCurrentTopicLink">t0</a> applies. If one addt0 is given, the total number of addt0's needs to be equal to the total number of ADDRUN's!
<dt> addt0 (fit type 0, 4) </dt><dd> The number of the time-zero channel of the histogram. If grouping of histograms is present (see <a href="#ForwardHisto" class="foswikiCurrentTopicLink">forward</a>) the same syntax as for <a href="#TimeZero" class="foswikiCurrentTopicLink">t0</a> applies. If one addt0 is given, the total number of addt0's needs to be equal to the total number of ADDRUN's!
</dd></dl>
<p></p> <dl>
<dt> addt0 (fit types 2, 4) </dt><dd> The numbers of time-zero channels of the histograms in the order <i>t</i><sub>0,f</sub> <i>t</i><sub>0,b</sub> [<i>t</i><sub>0,r</sub> <i>t</i><sub>0,l</sub>]. If grouping of histograms is present (see <a href="#ForwardHisto" class="foswikiCurrentTopicLink">forward</a>) the same syntax as for <a href="#TimeZero" class="foswikiCurrentTopicLink">t0</a> applies. If one addt0 is given, the total number of addt0's needs to be equal to the total number of ADDRUN's!
<dt> addt0 (fit types 2) </dt><dd> The numbers of time-zero channels of the histograms in the order <i>t</i><sub>0,f</sub> <i>t</i><sub>0,b</sub> [<i>t</i><sub>0,r</sub> <i>t</i><sub>0,l</sub>]. If grouping of histograms is present (see <a href="#ForwardHisto" class="foswikiCurrentTopicLink">forward</a>) the same syntax as for <a href="#TimeZero" class="foswikiCurrentTopicLink">t0</a> applies. If one addt0 is given, the total number of addt0's needs to be equal to the total number of ADDRUN's!
</dd></dl>
<p></p> <dl>
<dt> xy-data (fit type 8) </dt><dd> Specification of the data from an ASCII or DB file which should be used as <i>x</i> and <i>y</i> data (in this order). For a simple ASCII file the column numbers are used, in the case of a DB file one can either specify the variable numbers or the name of the variables as given in the DB header.
</dd></dl>
<p></p> <dl>
<dt> fit </dt><dd> The range of data that should be considered when the fitting is done. For the &mu;SR fit types <strong>0</strong>, <strong>2</strong>, and <strong>4</strong> here the starting and end times are given in microseconds. For the non-&mu;SR fit type <strong>8</strong> the starting and end points of the fitting range are given in the units of the <i>x</i> data.<br><font color="#ff0000">In case the fit range specified here is larger than the <a href="#DataRange" class="foswikiCurrentTopicLink">data range</a> (in any direction), eventually the <a href="#DataRange" class="foswikiCurrentTopicLink">data range</a> will be used as fit range.</font>
<dt> fit </dt><dd> The range of data that should be considered when the fitting is done. For the &mu;SR fit types <strong>0</strong>, <strong>2</strong>, and <strong>4</strong> here the starting and end times are given in microseconds. For the non-&mu;SR fit type <strong>8</strong> the starting and end points of the fitting range are given in the units of the <i>x</i> data.<br><span class='foswikiRedFG'>In case the fit range specified here is larger than the <a href="#DataRange" class="foswikiCurrentTopicLink">data range</a> (in any direction), eventually the <a href="#DataRange" class="foswikiCurrentTopicLink">data range</a> will be used as fit range.</span>
</dd></dl>
<p></p> <dl>
<dt> packing </dt><dd> Number of data channels to be binned together. For the non-&mu;SR fit type <strong>8</strong> the binning is supposed to be 1.
@ -991,14 +997,14 @@ Notes
<h2><a name="A_4.8_The_PLOT_Block"></a> 4.8 The PLOT Block </h2>
The PLOT block is intended to collect all the information needed for the graphical presentation of the data and fits using <code>musrview</code>. The PLOT keyword at the beginning of the block is followed by a number which indicates the plot type. The plot types match the <a href="#FitTypes" class="foswikiCurrentTopicLink">fit types</a>. Additionally, it is possible to provide information using the following keywords: <dl>
<dt> runs </dt><dd> The numbers of the runs to be plotted have to be put here. The runs are numbered according to their appearance in the RUN block.
</dd> <dt> range </dt><dd> Here it is possible to define the plotting range explicitly. Depending on the plot type the following settings are allowed where the times are given in microseconds and the <i>N</i> in counts: <dl>
<dt> 0 without <a href="#LifeTimeCorrection" class="foswikiCurrentTopicLink">lifetimecorrection</a> </dt><dd> <i>t</i><sub>min</sub> <i>t</i><sub>max</sub> [ <i>N</i><sub>min</sub> <i>N</i><sub>max</sub> ]
</dd> <dt> 0 with <a href="#LifeTimeCorrection" class="foswikiCurrentTopicLink">lifetimecorrection</a>, 2, 4 </dt><dd> <i>t</i><sub>min</sub> <i>t</i><sub>max</sub> [ <i>A</i><sub>min</sub> <i>A</i><sub>max</sub> ]
</dd> <dt> range </dt><dd> Here it is possible to define the plotting range explicitly. Depending on the plot type the following settings are allowed where the times are given in microseconds and the <i>N</i> in counts (type 0, 4) or in counts/nsec (type 0): <dl>
<dt> 0 without <a href="#LifeTimeCorrection" class="foswikiCurrentTopicLink">lifetimecorrection</a>, 4 </dt><dd> <i>t</i><sub>min</sub> <i>t</i><sub>max</sub> [ <i>N</i><sub>min</sub> <i>N</i><sub>max</sub> ]
</dd> <dt> 0 with <a href="#LifeTimeCorrection" class="foswikiCurrentTopicLink">lifetimecorrection</a>, 2 </dt><dd> <i>t</i><sub>min</sub> <i>t</i><sub>max</sub> [ <i>A</i><sub>min</sub> <i>A</i><sub>max</sub> ]
</dd> <dt> 8 </dt><dd> <i>x</i><sub>min</sub> <i>x</i><sub>max</sub> [ <i>y</i><sub>min</sub> <i>y</i><sub>max</sub> ]
</dd></dl>
</dd> <dt> sub_ranges </dt><dd> Here it is possible to define the plotting range for each run individually. For the different plot types the command has the structure <dl>
<dt> 0 without <a href="#LifeTimeCorrection" class="foswikiCurrentTopicLink">lifetimecorrection</a> </dt><dd> <i>t</i><sub>min</sub><sup>1</sup> <i>t</i><sub>max</sub><sup>1</sup> <i>t</i><sub>min</sub><sup>2</sup> <i>t</i><sub>max</sub><sup>2</sup> ... <i>t</i><sub>min</sub><sup><i>n</i></sup> <i>t</i><sub>max</sub><sup><i>n</i></sup> [ <i>N</i><sub>min</sub> <i>N</i><sub>max</sub> ] (<i>n</i> = the number of runs to be plotted)
</dd> <dt> 0 with <a href="#LifeTimeCorrection" class="foswikiCurrentTopicLink">lifetimecorrection</a>, 2, 4 </dt><dd> <i>t</i><sub>min</sub><sup>1</sup> <i>t</i><sub>max</sub><sup>1</sup> <i>t</i><sub>min</sub><sup>2</sup> <i>t</i><sub>max</sub><sup>2</sup> ... <i>t</i><sub>min</sub><sup><i>n</i></sup> <i>t</i><sub>max</sub><sup><i>n</i></sup> [ <i>A</i><sub>min</sub> <i>A</i><sub>max</sub> ] (<i>n</i> = the number of runs to be plotted)
<dt> 0 without <a href="#LifeTimeCorrection" class="foswikiCurrentTopicLink">lifetimecorrection</a>, 4 </dt><dd> <i>t</i><sub>min</sub><sup>1</sup> <i>t</i><sub>max</sub><sup>1</sup> <i>t</i><sub>min</sub><sup>2</sup> <i>t</i><sub>max</sub><sup>2</sup> ... <i>t</i><sub>min</sub><sup><i>n</i></sup> <i>t</i><sub>max</sub><sup><i>n</i></sup> [ <i>N</i><sub>min</sub> <i>N</i><sub>max</sub> ] (<i>n</i> = the number of runs to be plotted)
</dd> <dt> 0 with <a href="#LifeTimeCorrection" class="foswikiCurrentTopicLink">lifetimecorrection</a>, 2 </dt><dd> <i>t</i><sub>min</sub><sup>1</sup> <i>t</i><sub>max</sub><sup>1</sup> <i>t</i><sub>min</sub><sup>2</sup> <i>t</i><sub>max</sub><sup>2</sup> ... <i>t</i><sub>min</sub><sup><i>n</i></sup> <i>t</i><sub>max</sub><sup><i>n</i></sup> [ <i>A</i><sub>min</sub> <i>A</i><sub>max</sub> ] (<i>n</i> = the number of runs to be plotted)
</dd> <dt> 8 </dt><dd> not yet implemented.
</dd></dl>
</dd> <dt> use_fit_ranges [ <i>y</i><sub>min</sub> <i>y</i><sub>max</sub>] </dt><dd> The fit ranges of the individual runs are used to present the data. Optionally, an ordinate range can be provided.
@ -1076,9 +1082,20 @@ For the graphical representation in plot type <strong>2</strong> the equation ab
</div>
and plotted together with the function given in the THEORY block.
<p></p>
<a name="RotatingReferenceFrameAsymmetryFit"></a>
<h2><a name="A_5.3_Rotating_45Reference_45Frame_Asymmetry_Fit"></a> 5.3 Rotating-Reference-Frame Asymmetry Fit </h2>
(Is going to be implemented as pure plotting option...)
<a name="MuMinusFit"></a>
<h2><a name="A_5.3_Negative_Muon_SR_Fit"></a> 5.3 Negative Muon &mu;SR Fit </h2>
The negative muon &mu;SR fit (fit type <strong>4</strong>) is used for single histogram fits of MuMinus, i.e.
<div style="text-align:center">
<img alt="N(t) &#61; \sum&#95;i N&#95;i\,\mathrm{e}^{-t/\tau&#95;i} \left&#91; 1 + A&#95;i(t)\right] + B(t)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_91086477d80ae4fd407c852073b3a5b8.png" />
</div>
where <img alt="i" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_c465118a8d86d5f25bba37cc1dcb38a0.png" /> runs over the different lifetime channels of <img alt="\mu^{-}" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_e5709fc3ddb272adeaa7258d3d25ab22.png" />, and <dl>
<dt> <img alt="N&#95;i" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_e52a515ef5edcb18f7f96aedab4af26e.png" /> </dt><dd> counts of lifetime channel <img alt="i" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_c465118a8d86d5f25bba37cc1dcb38a0.png" />
</dd> <dt> <img alt="\tau&#95;i" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_65bea57ac8fb766c4f93ca77947937f5.png" /> </dt><dd> lifetime of lifetime channel <img alt="i" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_c465118a8d86d5f25bba37cc1dcb38a0.png" />
</dd> <dt> <img alt="A&#95;i(t)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_a57c0747dc272c95ffb683f35359ecf9.png" /> </dt><dd> depolarization function of lifetime channel <img alt="i" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_c465118a8d86d5f25bba37cc1dcb38a0.png" />
</dd> <dt> <img alt="B(t)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_ad7013bb754d671a35485233edf30254.png" /> </dt><dd> <img alt="B(t)&#61; B&#95;0 + \sum&#95;j B&#95;j \cos(j \omega&#95;{\rm cyclotron} t)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_b59000274e877651d11323c23f21c665.png" /> the background
</dd></dl>
<p></p>
Since MuMinus is quite generic, the full functional depends has to be written in the <a href="#TheTheoryBlock" class="foswikiCurrentTopicLink">THEORY Block</a>.
<p></p>
<a name="NonMusrFit"></a>
<h2><a name="A_5.4_Non_45SR_Fit"></a> 5.4 Non-&mu;SR Fit </h2>
@ -1354,7 +1371,7 @@ This way the efficiency of the user function can be increased by almost a factor
<p></p>
<hr />
<a name="UserFunctionRemark"></a>
<font color="#ff0000"><b>Important remark:</b></font> If <code>musrfit</code> <a href="MusrFitSetup.html#MusrFitInstallation">has been built</a> with parallelization support (default for <code>GCC</code> &ge; 4.2) it should be taken care of the thread safety of the user-function <strong>operator()</strong>. During the function optimization of <code>musrfit</code> the <strong>operator()</strong> is called once for any given set of parameters in order to allow the safe execution of any calculation. Within the <a href="#SingleHistogramFit" class="foswikiCurrentTopicLink">single-histogram</a> and <a href="#AsymmetryFit" class="foswikiCurrentTopicLink">asymmetry</a> fits the calculation of &chi;<sup>2</sup> or the log-likelihood is parallelized and the <strong>operator()</strong> is expected to evaluate to reasonable values for a fixed set of parameters (but changing <i>t</i>) beginning with the second function call.
<span class='foswikiRedFG'><b>Important remark:</b></span> If <code>musrfit</code> <a href="MusrFitSetup.html#MusrFitInstallation">has been built</a> with parallelization support (default for <code>GCC</code> &ge; 4.2) it should be taken care of the thread safety of the user-function <strong>operator()</strong>. During the function optimization of <code>musrfit</code> the <strong>operator()</strong> is called once for any given set of parameters in order to allow the safe execution of any calculation. Within the <a href="#SingleHistogramFit" class="foswikiCurrentTopicLink">single-histogram</a> and <a href="#AsymmetryFit" class="foswikiCurrentTopicLink">asymmetry</a> fits the calculation of &chi;<sup>2</sup> or the log-likelihood is parallelized and the <strong>operator()</strong> is expected to evaluate to reasonable values for a fixed set of parameters (but changing <i>t</i>) beginning with the second function call.
In case this cannot be ensured, the parallelization can be disabled by <strong>--disable-omp</strong> on the <a href="MusrFitSetup.html#MusrFitInstallation">configure level</a> of the program installation.
<hr />
<p></p>
@ -1430,39 +1447,12 @@ For reporting bugs or requesting new features and improvements please use the <a
</div>
</div></div><!-- /endWrap -->
<p></p>
<!-- gugus -->
<div id='peopleIcon' onmouseout='$(this).css("visibility","hidden")'>
<img id='peopleIconImg' src='../data/people/information.png'>
</div>
<div id='tooltip'>
<div id='tooltip_inner'>
<table id='tooltip_table'>
<tr>
<td id='tooltip_avatar' rowspan='4'><img id='tooltip_avatar_img' src='../data/people/nobody-100.gif' /></td>
<td id='tooltip_username' colspan='2'>Oscar Fridolin</td>
</tr>
<tr>
<td id='tooltip_tel_title'>Telefon:</td>
<td id='tooltip_tel'>1234512345</td>
</tr>
<tr>
<td id='tooltip_mail_title'>E-Mail:</td>
<td id='tooltip_mail'>oscarfridolin@psi.ch</td>
</tr>
<tr>
<td id='tooltip_office_title'>Büro:</td>
<td id='tooltip_office'>WHGA/019</td>
</tr>
</table>
</div>
</div> <!--1850-->
<p></p>
<p></p>
<p></p>
<p></p>
</body>
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<p></p>

35
doc/html/user/MUSR/MusrFitAcknowledgements.html
View File

@ -1,7 +1,7 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html lang="en_US">
<!-- Mirrored from intranet.psi.ch/MUSR/MusrFitAcknowledgements?cover=print by HTTrack Website Copier/3.x [XR&CO'2010], Thu, 29 Mar 2012 14:12:46 GMT -->
<!-- Mirrored from intranet.psi.ch/MUSR/MusrFitAcknowledgements?cover=print by HTTrack Website Copier/3.x [XR&CO'2010], Tue, 08 May 2012 05:20:38 GMT -->
<!-- Added by HTTrack --><meta http-equiv="content-type" content="text/html;charset=iso-8859-1"><!-- /Added by HTTrack -->
<head>
<link rel="stylesheet" href="../pub/System/HeadlinesPlugin/style.css" type="text/css" media="all" />
@ -21,7 +21,7 @@
<meta name="TEXT_MODIFY_SEARCH" content="Modify search" />
<link rel="icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" /> <link rel="shortcut icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" />
<link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/MusrFitAcknowledgements?t=1333030349" type="application/x-wiki" title="edit MusrFitAcknowledgements" />
<link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/MusrFitAcknowledgements?t=1336454416" type="application/x-wiki" title="edit MusrFitAcknowledgements" />
<meta name="description" content="MusrFitAcknowledgements" />
<base /><!--[if IE]></base><![endif]-->
@ -109,7 +109,7 @@ pre {
</style><![endif]-->
<script src="https://intranet.psi.ch/pub/System/ChecklistPlugin/itemstatechange.js" language="javascript" type="text/javascript"></script><script src="https://intranet.psi.ch/pub/System/TimeTablePlugin/timetabletooltips.js" language="javascript" type="text/javascript"></script><link rel="stylesheet" href="../pub/System/FootNotePlugin/styles.css" type="text/css" media="all" /><!--FOOTNOTEPLUGIN_LINKCSS-->
<link rel="stylesheet" href="../pub/System/FootNotePlugin/styles.css" type="text/css" media="all" /><!--FOOTNOTEPLUGIN_LINKCSS-->
</head>
<body class="foswikiNoJs patternViewPage patternPrintPage">
<a name="PageTop"></a><div class="foswikiPage"><div id="patternScreen">
@ -142,39 +142,12 @@ pre {
</div>
</div></div><!-- /endWrap -->
<p></p>
<!-- gugus -->
<div id='peopleIcon' onmouseout='$(this).css("visibility","hidden")'>
<img id='peopleIconImg' src='../data/people/information.png'>
</div>
<div id='tooltip'>
<div id='tooltip_inner'>
<table id='tooltip_table'>
<tr>
<td id='tooltip_avatar' rowspan='4'><img id='tooltip_avatar_img' src='../data/people/nobody-100.gif' /></td>
<td id='tooltip_username' colspan='2'>Oscar Fridolin</td>
</tr>
<tr>
<td id='tooltip_tel_title'>Telefon:</td>
<td id='tooltip_tel'>1234512345</td>
</tr>
<tr>
<td id='tooltip_mail_title'>E-Mail:</td>
<td id='tooltip_mail'>oscarfridolin@psi.ch</td>
</tr>
<tr>
<td id='tooltip_office_title'>Büro:</td>
<td id='tooltip_office'>WHGA/019</td>
</tr>
</table>
</div>
</div> <!--5186-->
<p></p>
<p></p>
<p></p>
<p></p>
</body>
<!-- Mirrored from intranet.psi.ch/MUSR/MusrFitAcknowledgements?cover=print by HTTrack Website Copier/3.x [XR&CO'2010], Thu, 29 Mar 2012 14:12:47 GMT -->
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<p></p>

91
doc/html/user/MUSR/MusrFitSetup.html
View File

@ -1,7 +1,7 @@
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html lang="en_US">
<!-- Mirrored from intranet.psi.ch/MUSR/MusrFitSetup?cover=print by HTTrack Website Copier/3.x [XR&CO'2010], Thu, 29 Mar 2012 14:12:46 GMT -->
<!-- Mirrored from intranet.psi.ch/MUSR/MusrFitSetup?cover=print by HTTrack Website Copier/3.x [XR&CO'2010], Tue, 08 May 2012 05:20:37 GMT -->
<!-- Added by HTTrack --><meta http-equiv="content-type" content="text/html;charset=iso-8859-1"><!-- /Added by HTTrack -->
<head>
<link rel="stylesheet" href="../pub/System/HeadlinesPlugin/style.css" type="text/css" media="all" />
@ -21,7 +21,7 @@
<meta name="TEXT_MODIFY_SEARCH" content="Modify search" />
<link rel="icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" /> <link rel="shortcut icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" />
<link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/MusrFitSetup?t=1333030348" type="application/x-wiki" title="edit MusrFitSetup" />
<link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/MusrFitSetup?t=1336454415" type="application/x-wiki" title="edit MusrFitSetup" />
<meta name="description" content="MusrFitSetup" />
<base /><!--[if IE]></base><![endif]-->
@ -109,7 +109,7 @@ pre {
</style><![endif]-->
<script src="https://intranet.psi.ch/pub/System/ChecklistPlugin/itemstatechange.js" language="javascript" type="text/javascript"></script><script src="https://intranet.psi.ch/pub/System/TimeTablePlugin/timetabletooltips.js" language="javascript" type="text/javascript"></script><link rel="stylesheet" href="../pub/System/FootNotePlugin/styles.css" type="text/css" media="all" /><!--FOOTNOTEPLUGIN_LINKCSS-->
<link rel="stylesheet" href="../pub/System/FootNotePlugin/styles.css" type="text/css" media="all" /><!--FOOTNOTEPLUGIN_LINKCSS-->
</head>
<body class="foswikiNoJs patternViewPage patternPrintPage">
<a name="PageTop"></a><div class="foswikiPage"><div id="patternScreen">
@ -171,7 +171,7 @@ pre {
<p></p>
<h1><a name="A_1_Supported_Operating_Systems_and_Software_Requirements"></a> 1 Supported Operating Systems and Software Requirements </h1>
<p></p>
This page is intended to demonstrate for the interested user which steps are necessary to set up the <a href="http://www.gnu.org/philosophy/free-sw.html" target="_top">free software</a> &mu;SR data analysis framework <code><a href="MusrFit.html">musrfit</a></code>. While the preferred way is to run the software on <strong>GNU/Linux</strong>, with some restrictions it can also be set up under <strong>MS Windows</strong> and <strong>MacOS X</strong>. <font color="#ff0000">In case <code>musrfit</code> should be installed according to the description found on this page, the user is strongly encouraged to <em>read completely</em> each section dealing with the present installation step <em>before</em> starting the installation process!</font>
This page is intended to demonstrate for the interested user which steps are necessary to set up the <a href="http://www.gnu.org/philosophy/free-sw.html" target="_top">free software</a> &mu;SR data analysis framework <code><a href="MusrFit.html">musrfit</a></code>. While the preferred way is to run the software on <strong>GNU/Linux</strong>, with some restrictions it can also be set up under <strong>MS Windows</strong> and <strong>MacOS X</strong>. <span class='foswikiRedFG'>In case <code>musrfit</code> should be installed according to the description found on this page, the user is strongly encouraged to <em>read completely</em> each section dealing with the present installation step <em>before</em> starting the installation process!</span>
<p></p>
<a name="ReqSw"></a>
Apart from <a href="http://gcc.gnu.org/" target="_top">GCC, the GNU Compiler Collection</a>, the GNU build tools <a href="http://www.gnu.org/software/autoconf/" target="_top">autoconf</a>, <a href="http://www.gnu.org/software/automake/" target="_top">automake</a> and <a href="http://www.gnu.org/software/libtool/" target="_top">libtool</a> as well as the helper tool <a href="http://pkg-config.freedesktop.org/wiki/" target="_top">pkg-config</a> <code>musrfit</code> requires the installation of a few open-source libraries and programs: <dl>
@ -183,7 +183,7 @@ Apart from <a href="http://gcc.gnu.org/" target="_top">GCC, the GNU Compiler Col
</dd></dl>
<p></p>
<a name="ReqSwNeXus"></a>
Additionally, <font color="#ff0000">only if</font> <code>musrfit</code> should support reading of data files in the <code>NeXus</code> format the following libraries are needed: <dl>
Additionally, <span class='foswikiRedFG'>only if</span> <code>musrfit</code> should support reading of data files in the <code>NeXus</code> format the following libraries are needed: <dl>
<dt> <a href="http://www.hdfgroup.org/products/hdf4/" target="_top">HDF4</a> </dt><dd> A library and multi-object file format for storing and managing data.
</dd> <dt> <a href="http://www.hdfgroup.org/HDF5/" target="_top">HDF5</a> </dt><dd> A data model, library, and file format for storing and managing data.
</dd> <dt> <a href="http://www.minixml.org/" target="_top">minixml</a> </dt><dd> A small <code>XML</code> library that can be used to read and write <code>XML</code> and <code>XML</code> -like data files. <em>Required version &#8805; 2.2</em>
@ -227,7 +227,7 @@ In order to obtain some information about the possible options for the installat
For any further information on the standard installation of software, please refer to the web search engine of choice and ask for "install software on linux"...
<p></p>
<h3><a name="A_3.1.2_Installation_of_61_61NeXus_61_61_requirements_40optional_41"></a> 3.1.2 Installation of <code><b>NeXus</b></code> requirements (optional) </h3>
<font color="#ff0000">Only if</font> <code>musrfit</code> should support reading data files in the <code>NeXus</code> format the further <a href="#ReqSwNeXus" class="foswikiCurrentTopicLink">required</a> software has to be set up. The required libraries and header files could either be available through the user's GNU/Linux distribution or if this is not the case, the packages can be installed from the source code. E.g. on Red Hat-like systems binary packages for <code>MXML</code>, <code>HDF4</code>, and <code>HDF5</code> might be called <code><b>mxml, mxml-devel, hdf, hdf-devel, hdf5, hdf5-devel</b></code>, on Debian-like systems <code><b>libmxml1, libmxml-dev, libhdf4-0, libhdf4-dev, libhdf5-serial-1.8.4, libhdf5-serial-dev</b></code>.
<span class='foswikiRedFG'>Only if</span> <code>musrfit</code> should support reading data files in the <code>NeXus</code> format the further <a href="#ReqSwNeXus" class="foswikiCurrentTopicLink">required</a> software has to be set up. The required libraries and header files could either be available through the user's GNU/Linux distribution or if this is not the case, the packages can be installed from the source code. E.g. on Red Hat-like systems binary packages for <code>MXML</code>, <code>HDF4</code>, and <code>HDF5</code> might be called <code><b>mxml, mxml-devel, hdf, hdf-devel, hdf5, hdf5-devel</b></code>, on Debian-like systems <code><b>libmxml1, libmxml-dev, libhdf4-0, libhdf4-dev, libhdf5-serial-1.8.4, libhdf5-serial-dev</b></code>.
<p></p>
Even though there might exist binary packages for the <code>NeXus</code> library, it is best to build and install it directly from the source code which can be found <a href="http://download.nexusformat.org/kits/" target="_top">here</a>.
<p></p>
@ -248,7 +248,7 @@ After one of the two setup variants has been executed the system should be told
echo &#34;/opt/root-system/lib&#34; &#62;&#62; /etc/ld.so.conf.d/root-system.conf
/sbin/ldconfig
</pre>
</li> <li> <font color="#ff0000">Additionally</font>, as normal user one should append the following lines to the <strong>~/.bashrc</strong> and/or <strong>~/.bash_profile</strong> (and then either restart the shell or call the same commands once more from the shell) in order to change some path-setting environment variables: <pre class="bash">
</li> <li> <span class='foswikiRedFG'>Additionally</span>, as normal user one should append the following lines to the <strong>~/.bashrc</strong> and/or <strong>~/.bash_profile</strong> (and then either restart the shell or call the same commands once more from the shell) in order to change some path-setting environment variables: <pre class="bash">
export ROOTSYS&#61;/opt/root-system/
export PATH&#61;$ROOTSYS/bin:$PATH
</pre>
@ -268,13 +268,13 @@ cd
svn up musrfit
</pre>
<p></p>
<font color="#ff0000">As an alternative (if subversion is not available)</font>, the source code can also be downloaded and extracted from a tarball.
<span class='foswikiRedFG'>As an alternative (if subversion is not available)</span>, the source code can also be downloaded and extracted from a tarball.
<pre class="bash">
cd
curl http://savannah.psi.ch/viewcvs/trunk/analysis/musrfit.tar.gz -G --data-binary root&#61;nemu&#37;2Flem &#124; tar xz
</pre>
<p></p>
After the source-code extraction the <strong>autogen.sh</strong> script is called to prepare the build environment. If it has been executed successfully the <strong>configure</strong> script should be ready to collect all the information needed to create the Makefiles. <font color="#ff0000">If <code>musrfit</code> should support <code>NeXus</code> data files this has to be enabled by specifying the <strong>--enable-NeXus</strong> switch when calling <strong>configure</strong>.</font> For an overview of all available options just call <code>./configure --help</code>. Besides the standard options there are a few special options which should be mentioned here:
After the source-code extraction the <strong>autogen.sh</strong> script is called to prepare the build environment. If it has been executed successfully the <strong>configure</strong> script should be ready to collect all the information needed to create the Makefiles. <span class='foswikiRedFG'>If <code>musrfit</code> should support <code>NeXus</code> data files this has to be enabled by specifying the <strong>--enable-NeXus</strong> switch when calling <strong>configure</strong>.</span> For an overview of all available options just call <code>./configure --help</code>. Besides the standard options there are a few special options which should be mentioned here:
<p></p> <dl>
<dt> --prefix </dt><dd> Specify the installation prefix, e.g. /opt/root-system (<em>by default: /usr/local</em>)
</dd> <dt> --with-rootsys </dt><dd> Specify the top of the <code>ROOT</code> installation directory, e.g. /opt/root-system
@ -310,7 +310,7 @@ export MUSRFITPATH&#61;/opt/root-system/bin
<p></p>
<a name="MusrGuiInstallLinux"></a>
<h2><a name="A_3.3_61_61musredit_61_61"></a> 3.3 <code><b>musredit</b></code> </h2>
<font color="#0000ff">In the latest version of <code>musrfit</code> the configure script tries to determine automatically if <code>Qt4.6</code> or higher is set up on the machine. In case this is found, the editor <code>musredit</code> is built already together with <code>musrfit</code>. <em>If not</em>, one can either try to call the configure script with the "--with-qt4" option or install this editor separately:</font>
<span class='foswikiBlueFG'>In the latest version of <code>musrfit</code> the configure script tries to determine automatically if <code>Qt4.6</code> or higher is set up on the machine. In case this is found, the editor <code>musredit</code> is built already together with <code>musrfit</code>. <em>If not</em>, one can either try to call the configure script with the "--with-qt4" option or install this editor separately:</span>
<pre class="bash">
cd src/musredit
qmake musredit.pro
@ -339,7 +339,7 @@ musrview test-histo-ROOT-NPP.msr
<p></p>
Notes
<p></p>
<a name="FootNote1note"></a><span class="FootNoteLabel"><a href="MusrFitSetup.html#FootNote1text" class="foswikiCurrentWebHomeLink"> <strong>1</strong> </a></span>: <span class="FootNote">In case only a single user is working at the machine it might be considerable to change the ownership of the <code>ROOT</code> folder so that the user has easy write access to this directory: <!-- verbatim605 --></span>
<a name="FootNote1note"></a><span class="FootNoteLabel"><a href="MusrFitSetup.html#FootNote1text" class="foswikiCurrentWebHomeLink"> <strong>1</strong> </a></span>: <span class="FootNote">In case only a single user is working at the machine it might be considerable to change the ownership of the <code>ROOT</code> folder so that the user has easy write access to this directory: <!-- verbatim5317 --></span>
<p></p>
<a name="FootNote2note"></a><span class="FootNoteLabel"><a href="MusrFitSetup.html#FootNote2text" class="foswikiCurrentWebHomeLink"> <strong>2</strong> </a></span>: <span class="FootNote"> When using <code>GCC</code> &#8805; 4.2 please make sure that the environment variables <strong>USE_PARALLEL_MINUIT2</strong> and <strong>USE_OPENMP</strong> are <em>not</em> set! Otherwise <code>MINUIT2</code> will be compiled with parallelization support and cannot be used together with <code>musrfit</code> afterwards since the <code>musrfit</code> code is <em>not</em> fully thread-safe! When compiled with <code>GCC</code> &#8805; 4.2 <code>musrfit</code> itself will parallelize the &chi;<sup>2</sup> calculation.</span>
<p></p>
@ -351,10 +351,10 @@ Notes
<p></p>
<h1><a name="A_4_MS_Windows"></a> 4 MS Windows </h1>
Under Windows a native installation is not supported but there is the possibility to run <code>musrfit</code> through <a href="http://www.cygwin.com/" target="_top">Cygwin</a> which has the great advantage that one gains additionally various nice <code>UNIX</code> tools also for other purposes <img src="../pub/Main/SmiliesPluginPSI/wink.gif" alt="wink" title="wink" border="0" /> <br>
<font color="#ff0000">Please also be aware of the fact that the X server which is going to be installed with Cygwin has to be started (e.g. by selecting it from the "Programs" folder) before any graphical application (<code>musrview</code>, <code>musrgui</code>, etc.) is run</font>.
<span class='foswikiRedFG'>Please also be aware of the fact that the X server which is going to be installed with Cygwin has to be started (e.g. by selecting it from the "Programs" folder) before any graphical application (<code>musrview</code>, <code>musrgui</code>, etc.) is run</span>.
<p></p>
<font color="#ff00ff">One more advice: Please never try to install either <code>ROOT</code> or <code>musrfit</code> from or to a directory containing spaces in the absolute path or in case you do, do not wonder if some errors occur!<br>
msr files, however, might be saved in such directories like ...\My Documents\...</font>
<span class='foswikiPinkFG'>One more advice: Please never try to install either <code>ROOT</code> or <code>musrfit</code> from or to a directory containing spaces in the absolute path or in case you do, do not wonder if some errors occur!<br>
msr files, however, might be saved in such directories like ...\My Documents\...</span>
<p></p>
<h2><a name="A_4.1_Requirements"></a> 4.1 Requirements </h2>
<h3><a name="A_4.1.1_Setting_up_Cygwin"></a> 4.1.1 Setting up Cygwin </h3>
@ -372,9 +372,9 @@ ln -sf /usr/include/boost-x&#95;yy&#95;z/boost /usr/include/boost
where <strong>x_yy_z</strong> has to be substituted by the correct version number, e.g. <strong>1_33_1</strong>.
<p></p>
<h3><a name="A_4.1.2_Installation_of_61_61NeXus_61_61_requirements_40optional_41"></a> 4.1.2 Installation of <code><b>NeXus</b></code> requirements (optional) </h3>
<font color="#ff0000">Only if</font> <code>musrfit</code> should support reading data files in the <code>NeXus</code> format the further <a href="#ReqSwNeXus" class="foswikiCurrentTopicLink">required</a> software has to be set up. Under Cygwin of all the required libraries only <code>HDF5</code> is available. The packages <code><b>hdf5</b></code> and <code><b>libhdf5-devel</b></code> can be installed through the Cygwin setup. One should also make sure that <code><b>bison</b></code>, <code><b>flex</b></code> and a package containing <nobr><b>/usr/lib/librpc.a</b></nobr> (e.g. <code><b>sunrpc</b></code> = <strong>4.0-3</strong>, <font color="#ff0000">but not</font> <code><b>sunrpc</b></code> = <strong>4.0-4</strong>) are installed.
<span class='foswikiRedFG'>Only if</span> <code>musrfit</code> should support reading data files in the <code>NeXus</code> format the further <a href="#ReqSwNeXus" class="foswikiCurrentTopicLink">required</a> software has to be set up. Under Cygwin of all the required libraries only <code>HDF5</code> is available. The packages <code><b>hdf5</b></code> and <code><b>libhdf5-devel</b></code> can be installed through the Cygwin setup. One should also make sure that <code><b>bison</b></code>, <code><b>flex</b></code> and a package containing <nobr><b>/usr/lib/librpc.a</b></nobr> (e.g. <code><b>sunrpc</b></code> = <strong>4.0-3</strong>, <span class='foswikiRedFG'>but not</span> <code><b>sunrpc</b></code> = <strong>4.0-4</strong>) are installed.
<p></p>
All other libraries have to be built from the sources. The following lines will track the installation of <code>JPEG</code> <strong>6b</strong>, <code>MXML</code> <strong>2.5</strong>, <code>HDF</code> <strong>4.2.5</strong>, and <code>NeXus</code> <strong>4.2.1</strong>. The version numbers and source-code locations might of course change with time but should be easily adjustable.
All other libraries have to be built from the sources. The following lines will track the installation of <code>JPEG</code> <strong>6b</strong>, <code>MXML</code> <strong>2.5</strong>, <code>HDF</code> <strong>4.2.7-patch1</strong>, and <code>NeXus</code> <strong>4.2.1</strong>. The version numbers and source-code locations might of course change with time but should be easily adjustable.
<pre class="bash">
cd
mkdir nexus
@ -391,8 +391,8 @@ cd mxml-2.5
make
make install
cd ..
curl http://www.hdfgroup.org/ftp/HDF/HDF&#95;Current/src/hdf-4.2.5.tar.gz -G &#124; tar xz
cd hdf-4.2.5
curl http://www.hdfgroup.org/ftp/HDF/HDF&#95;Current/src/hdf-4.2.7-patch1.tar.gz -G &#124; tar xz
cd hdf-4.2.7-patch1
./configure --prefix&#61;/usr/local --enable-static --disable-fortran --with-jpeg&#61;/usr/local
make
make install
@ -406,7 +406,7 @@ make install
<p></p>
<h3><a name="A_4.1.3_61_61ROOT_61_61"></a> 4.1.3 <code><b>ROOT</b></code> </h3>
In order to install the <code>ROOT</code> system, there are two possibilities: <ul>
<li> Download the precompiled <strong>Cygwin GCC 4.3</strong> package of the most recent <code>ROOT</code> version from the <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a> and unpack it <font color="#ff0000">in a Cygwin shell</font> (in order to get the line endings correctly) at the final location. Suppose the package has been downloaded to <strong>C:\</strong> and the <code>ROOT</code> tree should be in <strong>C:\root</strong>, this is achieved by:<pre class="bash">
<li> Download the precompiled <strong>Cygwin GCC 4.3</strong> package of the most recent <code>ROOT</code> version from the <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a> and unpack it <span class='foswikiRedFG'>in a Cygwin shell</span> (in order to get the line endings correctly) at the final location. Suppose the package has been downloaded to <strong>C:\</strong> and the <code>ROOT</code> tree should be in <strong>C:\root</strong>, this is achieved by:<pre class="bash">
cd /cygdrive/c
tar xzf root&#95;v5.xx.yy.win32gcc-gcc-4.3.tar.gz
</pre>
@ -443,13 +443,13 @@ cd
svn up musrfit
</pre>
<p></p>
<font color="#ff0000">As an alternative (if subversion is not available)</font>, the source code can also be downloaded and extracted from a tarball.
<span class='foswikiRedFG'>As an alternative (if subversion is not available)</span>, the source code can also be downloaded and extracted from a tarball.
<pre class="bash">
cd
curl http://savannah.psi.ch/viewcvs/trunk/analysis/musrfit.tar.gz -G --data-binary root&#61;nemu&#37;2Flem &#124; tar xz
</pre>
<p></p>
After the source-code extraction the <strong>autogen.sh</strong> script is called to prepare the build environment. If it has been executed successfully the <strong>configure</strong> script should be ready to collect all the information needed to create the Makefiles. <font color="#ff0000">If <code>musrfit</code> should support <code>NeXus</code> data files this has to be enabled by specifying the <nobr><b>--enable-static</b></nobr> <nobr><b>--enable-NeXus</b></nobr> switches when calling <strong>configure</strong>.</font> For an overview of all available options just call <code>./configure --help</code>. Besides the standard options there are a few special options which should be mentioned here:
After the source-code extraction the <strong>autogen.sh</strong> script is called to prepare the build environment. If it has been executed successfully the <strong>configure</strong> script should be ready to collect all the information needed to create the Makefiles. <span class='foswikiRedFG'>If <code>musrfit</code> should support <code>NeXus</code> data files this has to be enabled by specifying the <nobr><b>--enable-static</b></nobr> <nobr><b>--enable-NeXus</b></nobr> switches when calling <strong>configure</strong>.</span> For an overview of all available options just call <code>./configure --help</code>. Besides the standard options there are a few special options which should be mentioned here:
<p></p> <dl>
<dt> --prefix </dt><dd> Specify the installation prefix, e.g. /opt/root-system (<em>by default: /usr/local</em>)
</dd> <dt> --with-rootsys </dt><dd> Specify the top of the <code>ROOT</code> installation directory, e.g. /opt/root-system
@ -479,7 +479,7 @@ In order to finish the installation of <code>musrfit</code> the paths where <cod
<p></p>
<a name="MusrEditInstallCygwin"></a>
<h2><a name="A_4.3_61_61musredit_61_61"></a> 4.3 <code><b>musredit</b></code> </h2>
<font color="#0000ff">In the latest version of <code>musrfit</code> the configure script tries to determine automatically if <code>Qt4.5</code> or higher is set up on the machine. In case this is found, the editor <code>musredit</code> is built already together with <code>musrfit</code>. <em>If not</em>, one can either try to call the configure script with the "--with-qt4" option or install this editor separately:</font>
<span class='foswikiBlueFG'>In the latest version of <code>musrfit</code> the configure script tries to determine automatically if <code>Qt4.5</code> or higher is set up on the machine. In case this is found, the editor <code>musredit</code> is built already together with <code>musrfit</code>. <em>If not</em>, one can either try to call the configure script with the "--with-qt4" option or install this editor separately:</span>
<pre class="bash">
cd src/musredit
qmake-qt4 musredit.pro
@ -524,7 +524,7 @@ C:\cygwin\bin\ash.exe /bin/rebaseall
If this does not resolve the problem, try to change the compatibility settings of <strong>C:\cygwin\bin\sh.exe</strong> and <strong>C:\cygwin\bin\bash.exe</strong> so that they are executed with administrator privileges.
<p></p>
<h1><a name="A_5_Mac_OS_X"></a> 5 Mac OS X </h1>
With Mac OS X the situation is up to some extent similar like on MS Windows but still different since Mac OS X is a UNIX system. The similarity is that also on OS X a helping framework&mdash;<i>either</i> <code><a href="http://www.macports.org/" target="_top">MacPorts</a></code> <em>or</em> <code><a href="http://www.finkproject.org/" target="_top">Fink</a></code>&mdash;which provides open-source software is employed to fulfill the basic software requirements of <code>musrfit</code>. <font color="#ff0000">In the following, both possibilities (using <code>MacPorts</code> or <code>Fink</code>) are described but it is emphasized here that it should be followed <em>only one of the possible routes</em>.</font>
With Mac OS X the situation is up to some extent similar like on MS Windows but still different since Mac OS X is a UNIX system. The similarity is that also on OS X a helping framework&mdash;<i>either</i> <code><a href="http://www.macports.org/" target="_top">MacPorts</a></code> <em>or</em> <code><a href="http://www.finkproject.org/" target="_top">Fink</a></code>&mdash;which provides open-source software is employed to fulfill the basic software requirements of <code>musrfit</code>. <span class='foswikiRedFG'>In the following, both possibilities (using <code>MacPorts</code> or <code>Fink</code>) are described but it is emphasized here that it should be followed <em>only one of the possible routes</em>.</span>
<p></p>
<h2><a name="A_5.1_Requirements_40_61_61MacPorts_61_61_41"></a> 5.1 Requirements (<code><b>MacPorts</b></code>) </h2>
<h3><a name="A_5.1.1_Everything_but_61_61ROOT_61_61_and_61_61NeXus_61_61"></a> 5.1.1 Everything but <code><b>ROOT</b></code> and <code><b>NeXus</b></code> </h3>
@ -561,7 +561,7 @@ Under OS X 10.6 Snow Leopard it will not be possible to install <code><b>qt3-mac
<p></p>
<h3><a name="A_5.1.2_Installation_of_61_61NeXus_61_61_requirements_40optional_41"></a> 5.1.2 Installation of <code><b>NeXus</b></code> requirements (optional) </h3>
<p></p>
<font color="#ff0000">Only if</font> <code>musrfit</code> should support reading data files in the <code>NeXus</code> format the further <a href="#ReqSwNeXus" class="foswikiCurrentTopicLink">required</a> packages are set up:
<span class='foswikiRedFG'>Only if</span> <code>musrfit</code> should support reading data files in the <code>NeXus</code> format the further <a href="#ReqSwNeXus" class="foswikiCurrentTopicLink">required</a> packages are set up:
<pre class="bash">
sudo port -v install jpeg6b hdf4 hdf5-18
</pre>
@ -591,7 +591,7 @@ make
</pre>
</li></ul>
<p></p>
In order to finalize the <code>ROOT</code> installation and to prepare already the installation of <code>musrfit</code> and <code>musrgui</code> / <code>musredit</code> this is a good time for setting necessary environment variables for the use in Mac OS X. Put the following lines (without the comments in parentheses and with the paths adjusted to your local installation) into the file <strong>~/.MacOSX/environment.plist</strong> and <font color="#ff0000">re-login</font>:<br>
In order to finalize the <code>ROOT</code> installation and to prepare already the installation of <code>musrfit</code> and <code>musrgui</code> / <code>musredit</code> this is a good time for setting necessary environment variables for the use in Mac OS X. Put the following lines (without the comments in parentheses and with the paths adjusted to your local installation) into the file <strong>~/.MacOSX/environment.plist</strong> and <span class='foswikiRedFG'>re-login</span>:<br>
<pre class="html">
&#60;?xml version&#61;&#34;1.0&#34; encoding&#61;&#34;UTF-8&#34;?&#62;
&#60;!DOCTYPE plist PUBLIC &#34;-//Apple//DTD PLIST 1.0//EN&#34; &#34;http://www.apple.com/DTDs/PropertyList-1.0.dtd&#34;&#62;
@ -635,7 +635,7 @@ The <code>Fink</code> installer package also contains a graphical user interface
<p></p>
Under OS X 10.6 Snow Leopard it will not be possible to install <code><b>qt3mac</b></code> since the system is by default a 64-bit system and the old <code><b>qt3-mac</b></code> depends on software which is only available for 32-bit systems. It is suggested to install <code><b>qt4mac</b></code> instead and use <code>musredit</code>.
<p></p>
Also, due to some not fulfilled dependencies, it might not be possible to install FFTW3 through Fink. In this case (<font color="#ff0000">and ONLY in THIS case</font>) simply download the FFTW3 source code from <a href="http://www.fftw.org/download.html" target="_top">its download page</a> and install it from a terminal using the following commands (for the FFTW version 3.x.y):
Also, due to some not fulfilled dependencies, it might not be possible to install FFTW3 through Fink. In this case (<span class='foswikiRedFG'>and ONLY in THIS case</span>) simply download the FFTW3 source code from <a href="http://www.fftw.org/download.html" target="_top">its download page</a> and install it from a terminal using the following commands (for the FFTW version 3.x.y):
<pre class="bash">
tar xz fftw-3.x.y
cd fftw-3.x.y
@ -652,7 +652,7 @@ where <strong>x_yy_z</strong> has to be substituted by the correct version numbe
<p></p>
<h3><a name="A_5.2.2_Installation_of_61_61NeXus_61_61_requirements_40optional_41"></a> 5.2.2 Installation of <code><b>NeXus</b></code> requirements (optional) </h3>
<p></p>
<font color="#ff0000">Only if</font> <code>musrfit</code> should support reading data files in the <code>NeXus</code> format the further <a href="#ReqSwNeXus" class="foswikiCurrentTopicLink">required</a> packages can be installed through <code>Fink</code>:
<span class='foswikiRedFG'>Only if</span> <code>musrfit</code> should support reading data files in the <code>NeXus</code> format the further <a href="#ReqSwNeXus" class="foswikiCurrentTopicLink">required</a> packages can be installed through <code>Fink</code>:
<p></p>
<code><b>libjpeg hdf hdf5-18 hdf5-18-shlibs</b></code>
<p></p>
@ -683,7 +683,7 @@ make
</li> <li> <code>ROOT</code> is also available through the <code>FinkCommander</code>! Install <strong>root5</strong> or <strong>root5-devel</strong>. However, this versions also have to be compiled locally since there are no binary packages. The manual installation mentioned right above should be preferred in this case.
</li></ul>
<p></p>
In order to finalize the <code>ROOT</code> installation and to prepare already the installation of <code>musrfit</code> and <code>musrgui</code> / <code>musredit</code> this is a good time for setting necessary environment variables for the use in Mac OS X. Put the following lines (without the comments in parentheses and with the paths adjusted to your local installation) into the file <strong>~/.MacOSX/environment.plist</strong> and <font color="#ff0000">re-login</font>:<br>
In order to finalize the <code>ROOT</code> installation and to prepare already the installation of <code>musrfit</code> and <code>musrgui</code> / <code>musredit</code> this is a good time for setting necessary environment variables for the use in Mac OS X. Put the following lines (without the comments in parentheses and with the paths adjusted to your local installation) into the file <strong>~/.MacOSX/environment.plist</strong> and <span class='foswikiRedFG'>re-login</span>:<br>
<pre class="html">
&#60;?xml version&#61;&#34;1.0&#34; encoding&#61;&#34;UTF-8&#34;?&#62;
&#60;!DOCTYPE plist PUBLIC &#34;-//Apple//DTD PLIST 1.0//EN&#34; &#34;http://www.apple.com/DTDs/PropertyList-1.0.dtd&#34;&#62;
@ -718,13 +718,13 @@ cd
svn up musrfit
</pre>
<p></p>
<font color="#ff0000">As an alternative (if subversion is not available)</font>, the source code can also be downloaded and extracted from a tarball.
<span class='foswikiRedFG'>As an alternative (if subversion is not available)</span>, the source code can also be downloaded and extracted from a tarball.
<pre class="bash">
cd
curl http://savannah.psi.ch/viewcvs/trunk/analysis/musrfit.tar.gz -G --data-binary root&#61;nemu&#37;2Flem &#124; tar xz
</pre>
<p></p>
After the source-code extraction the <strong>autogen.sh</strong> script is called to prepare the build environment. If it has been executed successfully the <strong>configure</strong> script should be ready to collect all the information needed to create the Makefiles. <font color="#ff0000">If <code>musrfit</code> should support <code>NeXus</code> data files this has to be enabled by specifying the <strong>--enable-NeXus</strong> switch when calling <strong>configure</strong>.</font> For an overview of all available options just call <code>./configure --help</code>. Besides the standard options there are a few special options which should be mentioned here:
After the source-code extraction the <strong>autogen.sh</strong> script is called to prepare the build environment. If it has been executed successfully the <strong>configure</strong> script should be ready to collect all the information needed to create the Makefiles. <span class='foswikiRedFG'>If <code>musrfit</code> should support <code>NeXus</code> data files this has to be enabled by specifying the <strong>--enable-NeXus</strong> switch when calling <strong>configure</strong>.</span> For an overview of all available options just call <code>./configure --help</code>. Besides the standard options there are a few special options which should be mentioned here:
<p></p> <dl>
<dt> --prefix </dt><dd> Specify the installation prefix, e.g. /opt/root-system (<em>by default: /usr/local</em>)
</dd> <dt> --with-rootsys </dt><dd> Specify the top of the <code>ROOT</code> installation directory, e.g. /opt/root-system
@ -754,7 +754,7 @@ In order to finish the installation of <code>musrfit</code> the paths where <cod
<p></p>
<a name="MusrGuiInstall"></a>
<h2><a name="A_5.4_61_61musredit_61_61"></a> 5.4 <code><b>musredit</b></code> </h2>
<font color="#0000ff">In the latest version of <code>musrfit</code> the configure script tries to determine automatically if <code>Qt4.5</code> or higher is set up on the machine. In case this is found, the editor <code>musredit</code> is built already together with <code>musrfit</code>. <em>If not</em>, one can either try to call the configure script with the "--with-qt4" option or install this editor separately:</font>
<span class='foswikiBlueFG'>In the latest version of <code>musrfit</code> the configure script tries to determine automatically if <code>Qt4.5</code> or higher is set up on the machine. In case this is found, the editor <code>musredit</code> is built already together with <code>musrfit</code>. <em>If not</em>, one can either try to call the configure script with the "--with-qt4" option or install this editor separately:</span>
<pre class="bash">
cd src/musredit
qmake musredit.pro
@ -818,39 +818,12 @@ musrview test-histo-ROOT-NPP.msr
</div>
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<p></p>
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<h1><a name="A_1_Introduction"></a> 1 Introduction </h1>
<code>musrgui</code> and <code>musredit</code> are editors which also provide a graphical user interface to the programs contained in the <code><a href="MusrFit.html">musrfit</a></code> suite and are intended to help the user handle <code>musrfit</code> msr files. They are implemented in <code>C++</code> and use the <a href="http://qt.nokia.com/" target="_top">Qt</a> framework. Principally, <code>musrgui</code> and <code>musredit</code> are doing the same, but are based on different Qt versions. <code>musrgui</code> is based on Qt 3.x and will only be maintained on bug-fixing level since the Qt 3.x licensing is less straight forward than the Qt 4.x one. <code>musredit</code> is based on Qt 4.6 (or above) and this is the program which will be developed further.<br>
On this documentation page only the features related to <code>musrfit</code> are described&mdash;the basic editor functions which should be self-explanatory are not.
<strong><font color="#ff0000">Before going on using <code>musrgui</code> / <code>musredit</code> it is strongly recommended to read the <a href="MusrFit.html">manual</a> of <code>musrfit</code> first!</font></strong>
<strong><span class='foswikiRedFG'>Before going on using <code>musrgui</code> / <code>musredit</code> it is strongly recommended to read the <a href="MusrFit.html">manual</a> of <code>musrfit</code> first!</span></strong>
<p></p>
<h1><a name="A_2_Available_Executables_44_Configuration_Files_and_their_Basic_Usage"></a> 2 Available Executables, Configuration Files and their Basic Usage </h1>
<a name="MusrEdit"></a>
@ -306,7 +306,7 @@ The features of <code>musrfit</code> which can be accessed by the graphical fron
<h1><a name="A_4_Editor_Features"></a> 4 Editor Features </h1>
Besides the functions described above and which are mostly interfacing <code>musrfit/msr2data</code> the editors of <code>musrgui</code> / <code>musredit</code> offer various functions for manipulating especially <code>musrfit</code> msr files:
<img src="../pub/MUSR/MusrGui/musrgui-editor-v0.png" alt="musrgui editor features" width='415' height='566' align="right" /> <ul>
<li> Upon right-clicking an open msr file a menu as shown to the right is displayed which offers the addition of any valid msr file block or theory function. In case a simple theory function is chosen, the function will be inserted into the THEORY block using the <a href="MusrFit.html#TheoryTable">correct syntax</a>. If one chooses to add a whole block to the file a dialog opens in which the necessary information for each block as described in the <a href="MusrFit.html#DescriptionOfTheMsrFileFormat">manual</a> of <code>musrfit</code> can be supplied. <font color="#0000ff">This feature is available only in <code>musrgui</code>. In <code>musredit</code> the respective functions can be accessed through the <em>Edit</em> menu.</font>
<li> Upon right-clicking an open msr file a menu as shown to the right is displayed which offers the addition of any valid msr file block or theory function. In case a simple theory function is chosen, the function will be inserted into the THEORY block using the <a href="MusrFit.html#TheoryTable">correct syntax</a>. If one chooses to add a whole block to the file a dialog opens in which the necessary information for each block as described in the <a href="MusrFit.html#DescriptionOfTheMsrFileFormat">manual</a> of <code>musrfit</code> can be supplied. <span class='foswikiBlueFG'>This feature is available only in <code>musrgui</code>. In <code>musredit</code> the respective functions can be accessed through the <em>Edit</em> menu.</span>
</li> <li> In order to comment or uncomment lines in a msr file select the according lines and apply <strong>Edit &rarr; (Un)Comment</strong> or use the keyboard shortcut <strong>Ctrl+(Shift)+m</strong>.
</li></ul>
<p></p>
@ -457,39 +457,12 @@ For reporting bugs or requesting new features and improvements please use the <a
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@ -137,7 +137,7 @@ Installation instructions for Linux, MS Windows, and Mac OS X can be found <a hr
In principle the programs can be used in the same fashion as <code>WKM</code> (<code>wkmfit, wkmview</code>).
E.g., for fitting data as defined in the input file <code><b>8472.msr</b></code> one types:<pre>musrfit 8472.msr</pre> for plotting data and the corresponding
fit one calls:<pre>musrview 8472.msr</pre>
Additionally, there are editors called <code><a href="MusrGui.html">musrgui/musredit</a></code> available which can do everything the <code>emacs</code> plug-in for <code>WKM</code> is capable of and even more. <strong><font color="#ff0000">However, before going to use only <code>musrgui</code> / <code>musredit</code> it is strongly recommended to read at least this "Quickstart" since there are a few differences between the programs as well as new features which are partially described in the following.</font></strong>
Additionally, there are editors called <code><a href="MusrGui.html">musrgui/musredit</a></code> available which can do everything the <code>emacs</code> plug-in for <code>WKM</code> is capable of and even more. <strong><span class='foswikiRedFG'>However, before going to use only <code>musrgui</code> / <code>musredit</code> it is strongly recommended to read at least this "Quickstart" since there are a few differences between the programs as well as new features which are partially described in the following.</span></strong>
<p></p>
<h2><a name="Differences_between_61WKM_61_and_61musrfit_61_msr_files"></a> Differences between <code>WKM</code> and <code>musrfit</code> msr files </h2>
<p></p>
@ -280,39 +280,12 @@ RUN 2008/lem08&#95;his&#95;8472 MUE4 PSI ROOT-NPP (name beamline institute dat
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@ -196,7 +196,7 @@ packing 20
</li> <li> <pre>forward 3</pre> the histogram number; in this example 3 corresponds to the histogram of the "Up" positron counter
</li> <li> <pre>data 1 8000</pre> start and end bins of the range containing useful data in the histogram (to be adjusted, e.g. by using <code>musrt0</code>, see below)
</li> <li> <pre>t0 1</pre> histogram bin corresponding to the time zero (muon implantation time) (to be adjusted, e.g. by <code>musrt0</code>, see below)
</li> <li> <pre>fit 0 4.9</pre> start and end times (in &mu;s) defining the fit range.<br><font color="#ff0000">In case the fit range exceeds the range of useful data (specified above using the <strong>data</strong> tag), eventually this data range is used as fit range.</font>
</li> <li> <pre>fit 0 4.9</pre> start and end times (in &mu;s) defining the fit range.<br><span class='foswikiRedFG'>In case the fit range exceeds the range of useful data (specified above using the <strong>data</strong> tag), eventually this data range is used as fit range.</span>
</li> <li> <pre>packing 20</pre> the packing of the histograms (in histogram bins)<br><br>Since the data of three histograms is to be analyzed, the file contains not only one but three RUN blocks&mdash;each defining the histogram-specific information following the example given above.
</li></ul>
</li> <li> <a href="MusrFit.html#TheCommandsBlock">the COMMANDS block</a>:<pre>
@ -367,39 +367,12 @@ This page only summarizes the very basic features and options of the programs co
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</li> <li> <a href="MusrFitAcknowledgements.html">Acknowledgements</a>
</li></ul>
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-- <a href="http://lmu.web.psi.ch/lem/group.html" target="_top">AS</a> &amp; <a href="http://www.fsf.org/register_form?referrer=8369" target="_top">BMW</a> - last update 28. March 2012</div><!-- /foswikiTopic-->
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18
doc/html/user/pub/System/PatternSkinTheme2009/style.css
View File

@ -22,7 +22,7 @@
html body {
font-family:arial, verdana, sans-serif;
font-size:104%; /* to change the site's font size, change .foswikiPage below */
font-size:104%;
voice-family:"\"}\"";
voice-family:inherit;
font-size:small;
@ -30,6 +30,14 @@ html body {
html>body { /* Mozilla */
font-size:small;
}
body {
line-height:1.5em; /*S1*/
/* change font size here */
font-size:103%;
}
body font {
line-height:135%;
}
th {
line-height:1.15em;
}
@ -584,14 +592,6 @@ a:hover .foswikiAccessKey {
/* LAYOUT ELEMENTS */
/* for specific layout sub-elements see further down */
.foswikiPage {
line-height:1.5em; /*S1*/
/* change font size here */
font-size:105%;
}
.foswikiPage font {
line-height:135%;
}
.patternNoViewPage #patternOuter {
margin-left:0;
margin-right:0;

2
doc/html/user/pub/System/SkinTemplates/base.css
View File

@ -1 +1 @@
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2
doc/musrfit_dox.cfg
View File

@ -23,7 +23,7 @@ PROJECT_NAME = musrfit
# This could be handy for archiving the generated documentation or
# if some version control system is used.
PROJECT_NUMBER = 0.10.0
PROJECT_NUMBER = 0.11.0
# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute)
# base path where the generated documentation will be put.

8
src/classes/PRunMuMinus.cpp
View File

@ -84,7 +84,7 @@ PRunMuMinus::~PRunMuMinus()
// CalcChiSquare
//--------------------------------------------------------------------------
/**
* <p>Calculate chi-square. <b>(Not yet implemented)</b>
* <p>Calculate chi-square.
*
* <b>return:</b>
* - chisq value
@ -139,7 +139,7 @@ Double_t PRunMuMinus::CalcChiSquare(const std::vector<Double_t>& par)
// CalcChiSquareExpected (public)
//--------------------------------------------------------------------------
/**
* <p>Calculate expected chi-square. Currently not implemented.
* <p>Calculate expected chi-square.
*
* <b>return:</b>
* - chisq value == 0.0
@ -196,7 +196,7 @@ Double_t PRunMuMinus::CalcChiSquareExpected(const std::vector<Double_t>& par)
// CalcMaxLikelihood
//--------------------------------------------------------------------------
/**
* <p>Calculate log max-likelihood. <b>(Not yet implemented)</b>
* <p>Calculate log max-likelihood.
*
* <b>return:</b>
* - log max-likelihood value
@ -296,7 +296,7 @@ void PRunMuMinus::CalcNoOfFitBins()
// CalcTheory
//--------------------------------------------------------------------------
/**
* <p>Calculate theory for a given set of fit-parameters. <b>(Not yet implemented)</b>
* <p>Calculate theory for a given set of fit-parameters.
*/
void PRunMuMinus::CalcTheory()
{