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updated doc (svn -> git). Some minor changes.

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suter_a
2014-10-25 11:13:35 +02:00
parent d635eb33fd
commit 535b31f736
19 changed files with 2882 additions and 137 deletions
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2
src/external/BMWtools/BMWIntegrator.cpp vendored
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@@ -182,7 +182,7 @@ double TSinSqDWaveGapIntegralCuhre::IntegrateFunc()
int TSinSqDWaveGapIntegralCuhre::Integrand(const int *ndim, const double x[],
const int *ncomp, double f[], void *userdata) // x = {E, phi}, fPar = {twokBT, DeltaD(T), Ec, phic, DeltaS(T)}
{
double deltasq(TMath::Power(fPar[1]*TMath::Cos(2.0*x[1]*fPar[3]) + fPar[4],2.0));
double deltasq(TMath::Power(fPar[1]*TMath::Cos(2.0*x[1]*fPar[3]) + fPar[4], 2.0));
f[0] = TMath::Power(TMath::Sin(x[1]*fPar[3]),2.0)/TMath::Power(TMath::CosH(TMath::Sqrt(x[0]*x[0]*fPar[2]*fPar[2]+deltasq)/fPar[0]),2.0);
return 0;
}

2
src/external/nexus/PNeXus.cpp vendored
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@@ -3304,7 +3304,7 @@ int PNeXus::ReadFileIdf2()
{
cout << endl << ">> reading NeXus IDF Version 2 file ..." << endl;
// create first the necessary NXentry object for IDF Version 1
// create first the necessary NXentry object for IDF Version 2
fNxEntry2 = new PNeXusEntry2();
if (fNxEntry2 == 0) {
fErrorCode = PNEXUS_OBJECT_INVOK_ERROR;

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src/musredit/images/musrfit.svg Normal file
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@@ -0,0 +1,290 @@
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88
src/tests/analyticFakeData/analyticFakeData.C
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@@ -5,8 +5,6 @@
Author: Andreas Suter
e-mail: andreas.suter@psi.ch
$Id$
***************************************************************************/
/***************************************************************************
@@ -51,8 +49,7 @@ void analyticFakeData(const TString type, UInt_t runNo)
fileName.Form("0%d.root", (Int_t)runNo);
// Double_t t0[8] = {3419.0, 3520.0, 3520.0, 3421.0, 3517.0, 3418.0, 3522.0, 3623.0}; // runNo: 1000 & 2000
Double_t t0[8] = {3519.0, 3420.0, 3520.0, 3621.0, 3417.0, 3518.0, 3422.0, 3423.0}; // runNo: 1001 & 2001
Double_t t0[16] = {0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0};
if (!type.CompareTo("TLemRunHeader")) {
// feed run info header
@@ -70,7 +67,7 @@ void analyticFakeData(const TString type, UInt_t runNo)
header->SetImpEnergy(31.8);
header->SetSampleTemperature(0.2, 0.001);
header->SetSampleBField(-1.0, 0.1);
header->SetTimeResolution(0.1953125);
header->SetTimeResolution(0.025);
header->SetNChannels(66601);
header->SetNHist(8);
header->SetCuts("none");
@@ -86,15 +83,15 @@ void analyticFakeData(const TString type, UInt_t runNo)
// 1st write all the required RunInfo entries
header->Set("RunInfo/Generic Validator URL", "http://lmu.web.psi.ch/facilities/software/MusrRoot/validation/MusrRoot.xsd");
header->Set("RunInfo/Specific Validator URL", "http://lmu.web.psi.ch/facilities/software/MusrRoot/validation/MusrRootLEM.xsd");
header->Set("RunInfo/Specific Validator URL", "http://lmu.web.psi.ch/facilities/software/MusrRoot/validation/MusrRootHAL9500.xsd");
header->Set("RunInfo/Generator", "analyticFakeData");
header->Set("RunInfo/File Name", fileName);
tstr.Form("0%d - test", runNo);
header->Set("RunInfo/Run Title", tstr);
header->Set("RunInfo/Run Number", (Int_t)runNo);
header->Set("RunInfo/Start Time", "1970-01-01 00:00:00");
header->Set("RunInfo/Stop Time", "1970-01-01 00:00:00");
prop.Set("Run Duration", 0, "sec");
header->Set("RunInfo/Stop Time", "1970-01-01 00:00:02");
prop.Set("Run Duration", 2, "sec");
header->Set("RunInfo/Run Duration", prop);
header->Set("RunInfo/Laboratory", "PSI");
header->Set("RunInfo/Instrument", "virtual");
@@ -107,20 +104,20 @@ void analyticFakeData(const TString type, UInt_t runNo)
header->Set("RunInfo/Sample Name", "virtual");
prop.Set("Sample Temperature", 1.0, "mK");
header->Set("RunInfo/Sample Temperature", prop);
prop.Set("Sample Magnetic Field", 0.0, "G");
prop.Set("Sample Magnetic Field", 40.0, "T");
header->Set("RunInfo/Sample Magnetic Field", prop);
prop.Set("Sample Temperature", 1.0, "mK");
header->Set("RunInfo/No of Histos", 8);
prop.Set("Time Resolution", 0.1953125, "ns");
prop.Set("Time Resolution", 0.025, "ns");
header->Set("RunInfo/Time Resolution", prop);
vector<Int_t> ivec;
ivec.push_back(0);
ivec.push_back(20);
// ivec.push_back(20);
header->Set("RunInfo/RedGreen Offsets", ivec);
offset = 1;
// 2nd write all the required DetectorInfo entries
for (UInt_t i=0; i<8; i++) {
for (UInt_t i=0; i<16; i++) {
tstr.Form("DetectorInfo/Detector%03d/", i+offset);
label = tstr + TString("Name");
tstr1.Form("Detector%03d", (Int_t)(i+offset));
@@ -128,14 +125,15 @@ void analyticFakeData(const TString type, UInt_t runNo)
label = tstr + TString("Histo No");
header->Set(label, (Int_t)(i+offset));
label = tstr + TString("Histo Length");
header->Set(label, 66601);
header->Set(label, 426600);
label = tstr + TString("Time Zero Bin");
header->Set(label, t0[i]);
label = tstr + TString("First Good Bin");
header->Set(label, (Int_t)t0[i]);
label = tstr + TString("Last Good Bin");
header->Set(label, 66600);
header->Set(label, 426600);
}
/*
for (UInt_t i=0; i<8; i++) {
tstr.Form("DetectorInfo/Detector%03d/", 20+i+offset);
label = tstr + TString("Name");
@@ -152,7 +150,7 @@ void analyticFakeData(const TString type, UInt_t runNo)
label = tstr + TString("Last Good Bin");
header->Set(label, 66600);
}
*/
// 3rd write required SampleEnvironmentInfo entries
header->Set("SampleEnvironmentInfo/Cryo", "virtual");
@@ -160,45 +158,45 @@ void analyticFakeData(const TString type, UInt_t runNo)
header->Set("MagneticFieldEnvironmentInfo/Magnet Name", "virtual");
// 5th write required BeamlineInfo entries
header->Set("BeamlineInfo/Name", "muE4");
header->Set("BeamlineInfo/Name", "piE3");
}
// create histos
Double_t n0[8] = {13200.0, 13200.0, 13200.0, 13200.0, 13200.0, 13200.0, 13200.0, 13200.0};
Double_t bkg[8] = {264.0, 264.0, 264.0, 264.0, 264.0, 264.0, 264.0, 264.0};
Double_t n0[16] = {25.0, 24.8, 25.1, 25.0, 24.8, 24.9, 25.3, 25.0, 25.0, 24.8, 25.1, 25.0, 24.8, 24.9, 25.3, 25.0};
Double_t bkg[16] = {0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05};
const Double_t tau = 2197.019; // ns
// asymmetry related stuff
const Double_t timeResolution = 0.1953125; // ns
// Double_t a0[8] = {0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12, 0.12};
Double_t a0[8] = {0.21, 0.22, 0.22, 0.24, 0.22, 0.21, 0.22, 0.23};
// Double_t a1[8] = {0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.05};
Double_t a1[8] = {0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0};
Double_t phase[8] = {5.0*TMath::Pi()/180.0, 50.0*TMath::Pi()/180.0, 95.0*TMath::Pi()/180.0, 140.0*TMath::Pi()/180.0,
185.0*TMath::Pi()/180.0, 230.0*TMath::Pi()/180.0, 275.0*TMath::Pi()/180.0, 320.0*TMath::Pi()/180.0,};
const Double_t timeResolution = 0.025; // ns
Double_t a0[16] = {0.25, 0.26, 0.25, 0.26, 0.25, 0.26, 0.25, 0.26, 0.25, 0.26, 0.25, 0.26, 0.25, 0.26, 0.25, 0.26};
// Double_t a1[8] = {0.06, 0.07, 0.06, 0.07, 0.06, 0.07, 0.06, 0.07};
Double_t phase[16] = {5.0*TMath::Pi()/180.0, 27.5*TMath::Pi()/180.0, 50.0*TMath::Pi()/180.0, 72.5*TMath::Pi()/180.0,
95.0*TMath::Pi()/180.0, 117.5*TMath::Pi()/180.0, 140.0*TMath::Pi()/180.0, 162.5*TMath::Pi()/180.0,
185.0*TMath::Pi()/180, 207.5*TMath::Pi()/180.0, 230.0*TMath::Pi()/180.0, 252.5*TMath::Pi()/180.0,
275*TMath::Pi()/180.0, 297.5*TMath::Pi()/180.0, 320.0*TMath::Pi()/180.0, 342.5*TMath::Pi()/180.0};
const Double_t gamma = 0.0000135538817; // gamma/(2pi)
Double_t bb0 = 200.0; // field in Gauss
Double_t bb1 = 400.0; // field in Gauss
Double_t rate0 = 0.10/1000.0; // in 1/ns
Double_t rate1 = 0.15/1000.0; // in 1/ns
Double_t bb0 = 40000.0; // field in Gauss
// Double_t bb1 = 40015.0; // field in Gauss
Double_t rate0 = 0.25/1000.0; // in 1/ns
// Double_t rate1 = 0.15/1000.0; // in 1/ns
// fake function parameters header info: only for test purposes
if (type.CompareTo("TLemRunHeader")) {
TDoubleVector dvec;
header->Set("FakeFct/Def", "N0 exp(-t/tau_mu) [1 + A exp(-t lambda) cos(gamma_mu B t + phi)] + bkg");
for (UInt_t i=0; i<8; i++)
header->Set("FakeFct/Def", "N0 exp(-t/tau_mu) [1 + A exp(-1/2 (t sigma)^2) cos(gamma_mu B t + phi)] + bkg");
for (UInt_t i=0; i<16; i++)
dvec.push_back(n0[i]);
header->Set("FakeFct/N0", dvec);
dvec.clear();
for (UInt_t i=0; i<8; i++)
for (UInt_t i=0; i<16; i++)
dvec.push_back(bkg[i]);
header->Set("FakeFct/bkg", dvec);
dvec.clear();
for (UInt_t i=0; i<8; i++)
for (UInt_t i=0; i<16; i++)
dvec.push_back(a0[i]);
header->Set("FakeFct/A", dvec);
dvec.clear();
for (UInt_t i=0; i<8; i++)
for (UInt_t i=0; i<16; i++)
dvec.push_back(phase[i]);
header->Set("FakeFct/phase", dvec);
prop.Set("B", bb0, "G");
@@ -209,38 +207,45 @@ void analyticFakeData(const TString type, UInt_t runNo)
TH1F *histo[16];
char str[128];
for (UInt_t i=0; i<8; i++) {
for (UInt_t i=0; i<16; i++) {
if (!type.CompareTo("TLemRunHeader"))
sprintf(str, "hDecay%02d", (Int_t)(i+offset));
else
sprintf(str, "hDecay%03d", (Int_t)(i+offset));
histo[i] = new TH1F(str, str, 66601, -0.5, 66600.5);
histo[i] = new TH1F(str, str, 426601, -0.5, 426600.5);
/*
if (!type.CompareTo("TLemRunHeader"))
sprintf(str, "hDecay%02d", (Int_t)(20+i+offset));
else
sprintf(str, "hDecay%03d", (Int_t)(20+i+offset));
histo[i+8] = new TH1F(str, str, 66601, -0.5, 66600.5);
histo[i+8] = new TH1F(str, str, 426601, -0.5, 426600.5);
*/
}
Double_t time;
Double_t dval, dval1;
for (UInt_t i=0; i<8; i++) {
for (UInt_t j=0; j<66600; j++) {
for (UInt_t i=0; i<16; i++) {
for (UInt_t j=0; j<426600; j++) {
if (j<t0[i]) {
histo[i]->SetBinContent(j+1, bkg[i]);
} else {
time = (Double_t)(j-t0[i])*timeResolution;
dval = (Double_t)n0[i]*TMath::Exp(-time/tau)*(1.0+a0[i]*TMath::Exp(-time*rate0)*TMath::Cos(TMath::TwoPi()*gamma*bb0*time+phase[i]))+(Double_t)bkg[i];
/*
dval = (Double_t)n0[i]*TMath::Exp(-time/tau)*(1.0+a0[i]*TMath::Exp(-time*rate0)*TMath::Cos(TMath::TwoPi()*gamma*bb0*time+phase[i])+
a1[i]*TMath::Exp(-time*rate1)*TMath::Cos(TMath::TwoPi()*gamma*bb1*time+phase[i]))+(Double_t)bkg[i];
*/
dval = (Double_t)n0[i]*TMath::Exp(-time/tau)*(1.0+a0[i]*TMath::Exp(-0.5*TMath::Power(time*rate0,2))*TMath::Cos(TMath::TwoPi()*gamma*bb0*time+phase[i]))+(Double_t)bkg[i];
histo[i]->SetBinContent(j+1, dval);
}
}
}
/*
// add a promp peak
Double_t ampl = 0.0;
Double_t promptLambda = 500.0/1000.0; // Lorentzain in 1/ns
if (ampl != 0.0) {
for (UInt_t i=0; i<8; i++) {
for (UInt_t j=1; j<66601; j++) {
for (UInt_t j=1; j<426601; j++) {
dval = histo[i]->GetBinContent(j);
dval1 = dval*0.9; // simulate a PPC
time = (Double_t)(j-t0[i])*timeResolution;
@@ -251,6 +256,7 @@ void analyticFakeData(const TString type, UInt_t runNo)
}
}
}
*/
// add Poisson noise
PAddPoissonNoise *addNoise = new PAddPoissonNoise();