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+ Edit | Attach | Print version | PDF | History: r2 < r1 | Backlinks | View wiki text | Refresh | More topic actions
Topic revision: r2 - 10 Jul 2011, wojek
@@ -276,7 +276,7 @@ The parameters are: -
-
+
diff --git a/doc/html/user/MUSR/Msr2Data.html b/doc/html/user/MUSR/Msr2Data.html
index 967c12f3..6dbfe67c 100644
--- a/doc/html/user/MUSR/Msr2Data.html
+++ b/doc/html/user/MUSR/Msr2Data.html
@@ -1,6 +1,6 @@
-
+
@@ -8,7 +8,7 @@
-
+
@@ -349,7 +349,7 @@ For reporting bugs or requesting new features and improvements please use the
-
@@ -422,7 +422,7 @@ For reporting bugs or requesting new features and improvements please use the
-
+
diff --git a/doc/html/user/MUSR/MusrFit.html b/doc/html/user/MUSR/MusrFit.html
index a3851131..043dc727 100644
--- a/doc/html/user/MUSR/MusrFit.html
+++ b/doc/html/user/MUSR/MusrFit.html
@@ -1,6 +1,6 @@
-
+
@@ -8,7 +8,7 @@
-
+
@@ -1453,7 +1453,7 @@ For reporting bugs or requesting new features and improvements please use the
-
@@ -1526,7 +1526,7 @@ For reporting bugs or requesting new features and improvements please use the
-
+
diff --git a/doc/html/user/MUSR/MusrFitAcknowledgements.html b/doc/html/user/MUSR/MusrFitAcknowledgements.html
index dad31e35..da6b674e 100644
--- a/doc/html/user/MUSR/MusrFitAcknowledgements.html
+++ b/doc/html/user/MUSR/MusrFitAcknowledgements.html
@@ -1,6 +1,6 @@
-
+
@@ -8,7 +8,7 @@
-
+
@@ -142,7 +142,7 @@ pre {
- Visit the
ROOTweb page and download the packed precompiled binary version matching best the GNU/Linux distribution. Then unpack the bundle to its final destination. @@ -250,24 +252,28 @@ export PATH=$ROOTSYS/bin:$PATH3.2
-When all required software has been set up it can be proceeded with themusrfitmusrfitinstallation. First, the most recent source code should be downloaded. The preferred way of doing so is to check out directly the subversion repository (if clients of subversion and ssh are installed). Assuming the code should be located in ~/musrfit this is achieved most easily calling from the terminal +When all required software has been set up it can be proceeded with themusrfitinstallation. First, the most recent source code should be downloaded. The preferred way of doing so is to clone the musrfit repository via git. Assuming the code should be located in ~/musrfit this is achieved most easily calling from the terminalcd -svn co svn+ssh://svn@savannah.psi.ch/repos/nemu/lem/trunk/analysis/musrfit musrfit +git clone https://bitbucket.org/muonspin/musrfit.git
-When asked (twice) for a password, type "svn". -If the repository had been checked out already before, one can update the local copy using: +orcd -svn up musrfit +git clone git://gitorious.psi.ch/nemu/musrfit.git
-As an alternative (if subversion is not available), the source code can also be downloaded and extracted from a tarball. +Note: musrfit has moved from svn to git. In case you still have an old svn version of musrfit, it is advised to remove it first. For svn users: for a smooth transition from svn to git, please check the following link: +Git for Subversion Users - A Cheat Sheet. + +If a local repository clone is already present, one can update it using:-cd -curl https://savannah01.psi.ch/viewvc/nemu_lem/trunk/analysis/musrfit/?view=tar -k -G | tar xz +cd musrfit +git pull
+As an alternative (if git is not available), the source code can also be downloaded from the following web-page: musrfit at bitbucket. + After the source-code extraction the autogen.sh script is called to prepare the build environment. If it has been executed successfully the configure script should be ready to collect all the information needed to create the Makefiles. Ifmusrfitshould supportNeXusdata files this has to be enabled by specifying the --enable-NeXus switch when calling configure. For an overview of all available options just call./configure --help. Besides the standard options there are a few special options which should be mentioned here:- --prefix
- Specify the installation prefix, e.g. /opt/root-system (by default: /usr/local)
@@ -368,7 +374,7 @@ where x_yy_z has to be substituted by the correct version numbe
4.1.2 Installation of
Only ifNeXusrequirements (optional)musrfitshould support reading data files in theNeXusformat the further required software has to be set up. Under Cygwin of all the required libraries onlyHDF5is available. The packageshdf5andlibhdf5-develcan be installed through the Cygwin setup. One should also make sure thatbison,flexand a package containing/usr/lib/librpc.a (e.g.sunrpc= 4.0-3, but notsunrpc= 4.0-4) are installed. -All other libraries have to be built from the sources. The following lines will track the installation ofJPEG6b,MXML2.8,HDF4.2.7-patch1, andNeXus4.2.1. The version numbers and source-code locations might of course change with time but should be easily adjustable. +All other libraries have to be built from the sources. The following lines will track the installation ofJPEG6b,MXML2.9,HDF4.2.7-patch1, andNeXus4.3.2. The version numbers and source-code locations might of course change with time but should be easily adjustable.cd mkdir nexus @@ -379,8 +385,8 @@ cd jpeg-6b make make install cd .. -curl www.msweet.org/files/project3/mxml-2.8.tar.gz -G | tar xz -cd mxml-2.8 +curl www.msweet.org/files/project3/mxml-2.9.tar.gz -G | tar xz +cd mxml-2.9 ./configure --prefix=/usr/local --enable-static make make install @@ -391,8 +397,8 @@ cd hdf-4.2.7-patch1 make make install cd .. -curl http://download.nexusformat.org/kits/nexus-4.2.1.tar.gz -G | tar xz -cd nexus-4.2.1 +curl http://download.nexusformat.org/kits/nexus-4.3.2-20140413svn1919.tar.gz -G | tar xz +cd nexus-4.3.2-20140413svn1919 ./configure --prefix=/usr/local --with-hdf4=/usr/local --with-hdf5=/usr --with-xml=/usr/local make make install @@ -425,24 +431,28 @@ export MUSRFITPATH=$ROOTSYS/bin Afterwards close the Cygwin shell and reopen it again for the installation of
musrfit.4.2
-First, the most recent source code should be downloaded. The preferred way of doing so is to check out directly the subversion repository (if clients of subversion and ssh are installed). Assuming the code should be located in ~/musrfit this is achieved most easily calling from the terminal +First, the most recent source code should be downloaded. First, the most recent source code should be downloaded. The preferred way of doing so is to clone the musrfit repository via git. Assuming the code should be located in ~/musrfit this is achieved most easily calling from the terminalmusrfitcd -svn co svn+ssh://svn@savannah.psi.ch/repos/nemu/lem/trunk/analysis/musrfit musrfit +git clone https://bitbucket.org/muonspin/musrfit.git
-When asked (twice) for a password, type "svn". -If the repository had been checked out already before, one can update the local copy using: +orcd -svn up musrfit +git clone git://gitorious.psi.ch/nemu/musrfit.git
-As an alternative (if subversion is not available), the source code can also be downloaded and extracted from a tarball. +Note: musrfit has moved from svn to git. In case you still have an old svn version of musrfit, it is advised to remove it first. For svn users: for a smooth transition from svn to git, please check the following link: +Git for Subversion Users - A Cheat Sheet. + +If the repository had been checked out already before, one can update the local copy using:-cd -curl https://savannah01.psi.ch/viewvc/nemu_lem/trunk/analysis/musrfit/?view=tar -k -G | tar xz +cd musrfit +git pull
+As an alternative (if git is not available), the source code can also be downloaded from the following web-page: musrfit at bitbucket. + After the source-code extraction the autogen.sh script is called to prepare the build environment. If it has been executed successfully the configure script should be ready to collect all the information needed to create the Makefiles. Ifmusrfitshould supportNeXusdata files this has to be enabled by specifying the--enable-static --enable-NeXus switches when calling configure. For an overview of all available options just call./configure --help. Besides the standard options there are a few special options which should be mentioned here:- --prefix
- Specify the installation prefix, e.g. /opt/root-system (by default: /usr/local)
@@ -558,19 +568,19 @@ With
qt4-mac,musreditwill be installed. If it Only ifmusrfitshould support reading data files in theNeXusformat the further required packages are set up:-sudo port -v install jpeg6b hdf4 hdf5-18 +sudo port -v install jpeg6b hdf4 hdf5
-Unfortunately, theminixmlandNeXuslibraries have to be compiled and installed directly from the source code. Given the respective version numbers of 2.8 and 4.2.1 (which are subject to change with time) this can be achieved for example by: +Unfortunately, theminixmlandNeXuslibraries have to be compiled and installed directly from the source code. Given the respective version numbers of 2.9 and 4.3.2 (which are subject to change with time) this can be achieved for example by:cd -curl www.msweet.org/files/project3/mxml-2.8.tar.gz -G | tar xz -cd mxml-2.8 +curl www.msweet.org/files/project3/mxml-2.9.tar.gz -G | tar xz +cd mxml-2.9 ./configure --prefix=/usr/local make sudo make install cd .. -curl http://download.nexusformat.org/kits/nexus-4.2.1.tar.gz -G | tar xz -cd nexus-4.2.1 +curl http://download.nexusformat.org/kits/nexus-4.3.2-20140413svn1919.tar.gz -G | tar xz +cd nexus-4.3.2-20140413svn1919 ./configure --prefix=/usr/local make sudo make install @@ -658,17 +668,17 @@ where x_yy_z has to be substituted by the correct version numbe
libjpeg hdf hdf5-18 hdf5-18-shlibs-Unfortunately, theminixmlandNeXuslibraries have to be compiled and installed directly from the source code. Given the respective version numbers of 2.8 and 4.2.1 (which are subject to change with time) this can be achieved for example by: +Unfortunately, theminixmlandNeXuslibraries have to be compiled and installed directly from the source code. Given the respective version numbers of 2.9 and 4.3.2 (which are subject to change with time) this can be achieved for example by:cd -curl www.msweet.org/files/project3/mxml-2.8.tar.gz -G | tar xz -cd mxml-2.8 +curl www.msweet.org/files/project3/mxml-2.9.tar.gz -G | tar xz +cd mxml-2.9 ./configure --prefix=/usr/local make sudo make install cd .. -curl http://download.nexusformat.org/kits/nexus-4.2.1.tar.gz -G | tar xz -cd nexus-4.2.1 +curl http://download.nexusformat.org/kits/nexus-4.3.2-20140413svn1919.tar.gz -G | tar xz +cd nexus-4.3.2-20140413svn1919 ./configure --prefix=/usr/local make sudo make install @@ -712,24 +722,30 @@ export PATH=$ROOTSYS/bin:$QTDIR/bin:$PATH
5.3
-First, the most recent source code should be downloaded. The preferred way of doing so is to check out directly the subversion repository (if clients of subversion and ssh are installed). Assuming the code should be located in ~/musrfit this is achieved most easily calling from the terminal +First, the most recent source code should be downloaded. First, the most recent source code should be downloaded. The preferred way of doing so is to clone the musrfit repository via git. Assuming the code should be located in ~/musrfit this is achieved most easily calling from the terminal +musrfitcd -svn co svn+ssh://svn@savannah.psi.ch/repos/nemu/lem/trunk/analysis/musrfit musrfit +git clone https://bitbucket.org/muonspin/musrfit.git
-When asked (twice) for a password, type "svn". -If the repository had been checked out already before, one can update the local copy using: +orcd -svn up musrfit +git clone git://gitorious.psi.ch/nemu/musrfit.git
-As an alternative (if subversion is not available), the source code can also be downloaded and extracted from a tarball. + +Note: musrfit has moved from svn to git. In case you still have an old svn version of musrfit, it is advised to remove it first. For svn users: for a smooth transition from svn to git, please check the following link: +Git for Subversion Users - A Cheat Sheet. + +If a local repository clone is already present, one can update it using:-cd -curl https://savannah01.psi.ch/viewvc/nemu_lem/trunk/analysis/musrfit/?view=tar -k -G | tar xz +cd musrfit +git pull
+As an alternative (if git is not available), the source code can also be downloaded from the following web-page: musrfit at bitbucket. + After the source-code extraction the autogen.sh script is called to prepare the build environment. If it has been executed successfully the configure script should be ready to collect all the information needed to create the Makefiles. Ifmusrfitshould supportNeXusdata files this has to be enabled by specifying the --enable-NeXus switch when calling configure. For an overview of all available options just call./configure --help. Besides the standard options there are a few special options which should be mentioned here:- --prefix
- Specify the installation prefix, e.g. /opt/root-system (by default: /usr/local)
@@ -830,9 +846,9 @@ musrview test-histo-ROOT-NPP.msr
- Edit | Attach | Print version | PDF | History: r56 < r55 < r54 < r53 | Backlinks | View wiki text | Refresh | More topic actions + Edit | Attach | Print version | PDF | History: r60 < r59 < r58 < r57 | Backlinks | View wiki text | Refresh | More topic actions-Topic revision: r56 - 09 May 2014, AndreasSuter+Topic revision: r60 - 25 Oct 2014, AndreasSuter- + diff --git a/doc/html/user/MUSR/MusrGui.html b/doc/html/user/MUSR/MusrGui.html index 4a533721..aaeb53e1 100644 --- a/doc/html/user/MUSR/MusrGui.html +++ b/doc/html/user/MUSR/MusrGui.html @@ -1,6 +1,6 @@ - + @@ -8,7 +8,7 @@ - + @@ -324,7 +324,7 @@ For reporting bugs or requesting new features and improvements please use the - @@ -397,7 +397,7 @@ For reporting bugs or requesting new features and improvements please use the - + diff --git a/doc/html/user/MUSR/QuickStart.html b/doc/html/user/MUSR/QuickStart.html index 7ac2c6f0..d07d8769 100644 --- a/doc/html/user/MUSR/QuickStart.html +++ b/doc/html/user/MUSR/QuickStart.html @@ -1,6 +1,6 @@ - + @@ -8,7 +8,7 @@ - + @@ -280,7 +280,7 @@ RUN 2008/lem08_his_8472 MUE4 PSI ROOT-NPP (name beamline institute dat@@ -881,7 +897,7 @@ musrview test-histo-ROOT-NPP.msr- Edit | Attach | Print version | PDF | History: r7 < r6 < r5 < r4 | Backlinks | View wiki text | Refresh | More topic actions + Edit | Attach | Print version | PDF | History: r7 < r6 < r5 < r4 | Backlinks | View wiki text | Refresh | More topic actionsTopic revision: r7 - 10 Jul 2011, wojek@@ -331,7 +331,7 @@ RUN 2008/lem08_his_8472 MUE4 PSI ROOT-NPP (name beamline institute dat - + diff --git a/doc/html/user/MUSR/TutorialSingleHisto.html b/doc/html/user/MUSR/TutorialSingleHisto.html index e354fc6d..7df6ca43 100644 --- a/doc/html/user/MUSR/TutorialSingleHisto.html +++ b/doc/html/user/MUSR/TutorialSingleHisto.html @@ -1,6 +1,6 @@ - + @@ -8,7 +8,7 @@ - + @@ -281,7 +281,7 @@ This page only summarizes the very basic features and options of the programs co - - + diff --git a/doc/html/user/MUSR/WebHome.html b/doc/html/user/MUSR/WebHome.html index 3ae90265..20eca72c 100644 --- a/doc/html/user/MUSR/WebHome.html +++ b/doc/html/user/MUSR/WebHome.html @@ -1,6 +1,6 @@ - + @@ -8,7 +8,7 @@ - + @@ -134,7 +134,7 @@ pre {
- Acknowledgements
- Edit | Attach | Print version | PDF | History: r4 < r3 < r2 < r1 | Backlinks | View wiki text | Refresh | More topic actions
+ Edit | Attach | Print version | PDF | History: r4 < r3 < r2 < r1 | Backlinks | View wiki text | Refresh | More topic actions
Topic revision: r4 - 10 Jul 2011, wojek
@@ -193,7 +193,7 @@ pre {
-
+
diff --git a/doc/html/user/MUSR/MusrFitSetup.html b/doc/html/user/MUSR/MusrFitSetup.html
index 42a91445..e99130b2 100644
--- a/doc/html/user/MUSR/MusrFitSetup.html
+++ b/doc/html/user/MUSR/MusrFitSetup.html
@@ -1,6 +1,6 @@
-
+
@@ -8,7 +8,7 @@
-
+
@@ -203,11 +203,11 @@ Before the further installation will be described, please note the following res
Depending on the GNU/Linux distribution chosen, the above mentioned software—except the ROOT system and the NeXus library—should be available from the distributor and could be easily installed in the form of binary packages. If done in this way there should be taken care of installing both, the libraries and the header (dev, devel) files.On a Scientific Linux (Red Hat) system the following command executed as superuser from the shell will do the trick:
-yum install boost boost-devel gsl gsl-devel fftw3 fftw3-devel libxml2 libxml2-devel qt qt-devel +yum install git boost-devel gsl-devel fftw-devel libxml2-devel qt-devel qtwebkit-develWhen dealing with a distribution that uses the dpkg/apt package manager like Debian or Ubuntu the installation would look like:
-apt-get install libboost-dev gsl-bin libgsl0-dev fftw3 fftw3-dev libxml2 libxml2-dev libqt3-mt libqt3-mt-dev qt3-dev-tools +apt-get install git libboost-dev libgsl0-dev libfftw3-dev libxml2-dev libqt4-dev libqtwebkit-devEveryone should know best himself which is the way to install distribution software on the chosen distribution
@@ -221,11 +221,13 @@ In order to obtain some information about the possible options for the installat
For any further information on the standard installation of software, please refer to the web search engine of choice and ask for "install software on linux"...
3.1.2 Installation of NeXus requirements (optional)
-Only if musrfit should support reading data files in the NeXus format the further required software has to be set up. The required libraries and header files could either be available through the user's GNU/Linux distribution or if this is not the case, the packages can be installed from the source code. E.g. on Red Hat-like systems binary packages for MXML, HDF4, and HDF5 might be called mxml, mxml-devel, hdf, hdf-devel, hdf5, hdf5-devel, on Debian-like systems libmxml1, libmxml-dev, libhdf4-0, libhdf4-dev, libhdf5-serial-1.8.4, libhdf5-serial-dev.
+Only if musrfit should support reading data files in the NeXus format the further required software has to be set up. The required libraries and header files could either be available through the user's GNU/Linux distribution or if this is not the case, the packages can be installed from the source code. E.g. on Red Hat-like systems binary packages for MXML, HDF4, and HDF5 might be called mxml, mxml-devel, hdf, hdf-devel, hdf5, hdf5-devel, on Debian-like systems libmxml1, libmxml-dev, libhdf4-dev, libhdf5-dev.
Even though there might exist binary packages for the NeXus library, it is best to build and install it directly from the source code which can be found here.
3.1.3 ROOT
+Currently only ROOT 5.34/xx is support! Do NOT try to use ROOT 6.xx/yy!
+
The ROOT system may or may not be part of the GNU/Linux distribution. If it is, it should be checked that the provided binaries are of a recent version and then these in principle can be installed using a package manager as described above. In case the distribution provides no or only outdated binary packages there are the following possibilities:
- Edit | Attach | Print version | PDF | History: r43 < r42 < r41 < r40 | Backlinks | View wiki text | Refresh | More topic actions
+ Edit | Attach | Print version | PDF | History: r44 < r43 < r42 < r41 | Backlinks | View wiki text | Refresh | More topic actions
-Topic revision: r43 - 09 May 2014, AndreasSuter
+Topic revision: r44 - 25 Oct 2014, AndreasSuter
@@ -207,7 +207,7 @@ pre {