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base: LMU:testpull
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LMU:master LMU:testpull LMU:feature/numElem
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compare: LMU:feature/numElem
Branches Tags
LMU:testpull LMU:master LMU:feature/numElem

1 Commits
testpull ... feature/nu

Author SHA1 Message Date
salman
6a03b7aec1 Bump version and keep and old copy of original spaghetti of loops. 2023-01-27 14:12:12 +01:00
10 changed files with 4934 additions and 354 deletions
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4
TrimSP.html
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@@ -5,10 +5,9 @@
<link rel="stylesheet" href="ZGUI.css"> <link rel="stylesheet" href="ZGUI.css">
<link rel="stylesheet" href="https://www.w3schools.com/w3css/4/w3.css"> <link rel="stylesheet" href="https://www.w3schools.com/w3css/4/w3.css">
<script src="TrimSPelec.js"></script> <script src="TrimSPelec.js"></script>
<!script src="TrimSPWeb.js"></script>
<script src="TrimSPlib.js"></script> <script src="TrimSPlib.js"></script>
<script src="myplots.js"></script> <script src="myplots.js"></script>
<!script src="https://cdn.plot.ly/plotly-latest.min.js"></script>
<title>Trim.SP</title> <title>Trim.SP</title>
</head> </head>
<body onresize="resizePl()" onload="adjust_table();adjust_scans();"> <body onresize="resizePl()" onload="adjust_table();adjust_scans();">
@@ -63,7 +62,6 @@
<option value="Mg-31">Mg-31</option> <option value="Mg-31">Mg-31</option>
<option value="H">H</option> <option value="H">H</option>
<option value="He">He</option> <option value="He">He</option>
<option value="Ar">Ar</option>
</select> </select>
</td> </td>
</tr> </tr>

15
TrimSPlib.js
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@@ -1425,20 +1425,7 @@ function startSequence() {
iScan++; iScan++;
} }
let data = readAsciiFile(All["workPath"]+"/"+"fort.33"); let seq_file = All["fileNamePrefix"]+"_Seq_Results.dat";
let LComp = "";
let chem_formula = "";
let place_holder = "";
let re = new RegExp(place_holder,"g");
for (let i=1;i<=All["numLayer"];i++) {
LComp = "L"+i+"Comp";
chem_formula = All[LComp];
place_holder = "impL"+i;
re = new RegExp(place_holder,"g");
data = data.replace(re, chem_formula);
}
let seq_file = All["workPath"]+"/"+All["fileNamePrefix"]+"_Seq_Results.dat";
writeAsciiFile(seq_file, data);
// Remove redundant files and change the name fort.33 // Remove redundant files and change the name fort.33
if (!webOrApp) { if (!webOrApp) {

59
TrimSPweb.js
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@@ -4,70 +4,26 @@ function writeAsciiFile(filename,content) {
// Write string content into ascii file filename // Write string content into ascii file filename
// Go via CGI script // Go via CGI script
//console.log(filename, content); //console.log(filename, content);
// Prepare CGI args use POST for long files // Prepare CGI args
let cgiargs = "fn="+filename; // POST let cgiargs = "?fn="+filename;
let lines = content.split(/\n/); let lines = content.split(/\n/);
let prefix = filename.split(/\//); let prefix = filename.split(/\//);
for (let i=0; i<lines.length; i++) { for (let i=0; i<lines.length; i++) {
cgiargs += "&line" + i + "=" + lines[i].replace(/\s\s+/g, ' '); cgiargs += "&line" + i + "=" + lines[i];
} }
var xhttp; var xhttp;
xhttp = new XMLHttpRequest(); xhttp = new XMLHttpRequest();
xhttp.onreadystatechange = function() { xhttp.onreadystatechange = function() {
if (this.readyState == 4 && this.status == 200) { if (this.readyState == 4 && this.status == 200) {
console.log("response=",xhttp.responseText); //console.log("resptext=",xhttp.responseText);
} else if (this.readyState == 4) { } else if (this.readyState == 4) {
console.log(xhttp.status, xhttp.statusText); console.log(xhttp.status, xhttp.statusText);
} }
} }
let request = "/cgi-bin/singleTrimSP.cgi"; //POST let request = "/cgi-bin/singleTrimSP.cgi"+cgiargs;
xhttp.open("POST", request, false); //POST xhttp.open("GET", request, false);
xhttp.send();
//Send the proper header information along with the request
xhttp.setRequestHeader('Content-type', 'application/x-www-form-urlencoded'); //POST
xhttp.send(cgiargs); //POST
// Now you can add a link to the files
let d = document.getElementById("linkDiv");
if (!d) {
d = document.createElement("div");
d.id = "linkDiv";
document.body.appendChild(d);
}
let htmlLink = "Download files: <a href='";
htmlLink += "/tmp/" + prefix[2] + ".tgz'>";
htmlLink += prefix[2] + ".tgz</a>";
d.innerHTML = htmlLink;
return(1);
}
function writeAsciiFile2(filename,content) {
// Write string content into ascii file filename
// Go via CGI script
//console.log(filename, content);
// Prepare CGI args use GET for short files
let cgiargs = "?fn="+filename; // GET
let lines = content.split(/\n/);
let prefix = filename.split(/\//);
for (let i=0; i<lines.length; i++) {
cgiargs += "&line" + i + "=" + lines[i].replace(/\s\s+/g, ' ');
}
var xhttp;
xhttp = new XMLHttpRequest();
xhttp.onreadystatechange = function() {
if (this.readyState == 4 && this.status == 200) {
console.log("response=",xhttp.responseText);
} else if (this.readyState == 4) {
console.log(xhttp.status, xhttp.statusText);
}
}
let request = "/cgi-bin/singleTrimSP.cgi"+cgiargs; // GET
xhttp.open("GET", request, false); //GET
//Send the proper header information along with the request
xhttp.send(); // GET
// Now you can add a link to the files // Now you can add a link to the files
let d = document.getElementById("linkDiv"); let d = document.getElementById("linkDiv");
if (!d) { if (!d) {
@@ -104,7 +60,6 @@ function readAsciiFile(filename) {
filename += "?" + Date(); filename += "?" + Date();
//filename = "http://musruser.psi.ch" + filename; //filename = "http://musruser.psi.ch" + filename;
xhttp.open("GET", filename, false); xhttp.open("GET", filename, false);
xhttp.overrideMimeType("text/plain");
xhttp.send(); xhttp.send();
return(xhttp.responseText); return(xhttp.responseText);
} }

476
fortran/trimspNL.F
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fortran/trimspNLv1.0.1.F Normal file
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64
main.js
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@@ -34,10 +34,8 @@ function createWindow () {
console.log(result.canceled); console.log(result.canceled);
console.log(result.filePaths); console.log(result.filePaths);
if (!result.canceled) { if (!result.canceled) {
setImmediate(function() { var focusedWindow = BrowserWindow.getFocusedWindow();
var focusedWindow = BrowserWindow.getFocusedWindow(); focusedWindow.webContents.send('openFile',result.filePaths);
focusedWindow.webContents.send('openFile',result.filePaths);
});
} }
}).catch(err => { }).catch(err => {
console.log(err); console.log(err);
@@ -53,11 +51,9 @@ function createWindow () {
defaultPath : app.getPath('temp'), defaultPath : app.getPath('temp'),
properties:["openDirectory"]} properties:["openDirectory"]}
).then(result => { ).then(result => {
setImmediate(function() { console.log(result.filePaths)
console.log(result.filePaths) var focusedWindow = BrowserWindow.getFocusedWindow();
var focusedWindow = BrowserWindow.getFocusedWindow(); focusedWindow.webContents.send('selectFolder',result.filePaths);
focusedWindow.webContents.send('selectFolder',result.filePaths);
});
}).catch(err => { }).catch(err => {
console.log(err); console.log(err);
}) })
@@ -67,10 +63,8 @@ function createWindow () {
label: 'Save', label: 'Save',
accelerator: 'CmdOrCtrl+S', accelerator: 'CmdOrCtrl+S',
click () { click () {
setImmediate(function() { var focusedWindow = BrowserWindow.getFocusedWindow();
var focusedWindow = BrowserWindow.getFocusedWindow(); focusedWindow.webContents.send('saveFile','');
focusedWindow.webContents.send('saveFile','');
});
} }
}, },
{ {
@@ -86,10 +80,8 @@ function createWindow () {
], ],
properties: ['showOverwriteConfirmation']} properties: ['showOverwriteConfirmation']}
).then(result => { ).then(result => {
setImmediate(function() { var focusedWindow = BrowserWindow.getFocusedWindow();
var focusedWindow = BrowserWindow.getFocusedWindow(); focusedWindow.webContents.send('saveFile',result.filePath);
focusedWindow.webContents.send('saveFile',result.filePath);
});
}).catch(err => { }).catch(err => {
console.log(err); console.log(err);
}) })
@@ -99,13 +91,11 @@ function createWindow () {
label: 'Print', label: 'Print',
accelerator: 'CmdOrCtrl+P', accelerator: 'CmdOrCtrl+P',
click () { click () {
setImmediate(function() { var focusedWindow = BrowserWindow.getFocusedWindow();
var focusedWindow = BrowserWindow.getFocusedWindow(); const options = {};
const options = {}; focusedWindow.webContents.print(options, (success, errorType) => {
focusedWindow.webContents.print(options, (success, errorType) => { if (!success) console.log(errorType)
if (!success) console.log(errorType) })
});
});
} }
}, },
{ {
@@ -134,10 +124,8 @@ function createWindow () {
console.log(result.canceled); console.log(result.canceled);
console.log(result.filePaths); console.log(result.filePaths);
if (!result.canceled) { if (!result.canceled) {
setImmediate(function() { var focusedWindow = BrowserWindow.getFocusedWindow();
var focusedWindow = BrowserWindow.getFocusedWindow(); focusedWindow.webContents.send('plotProf',result.filePaths);
focusedWindow.webContents.send('plotProf',result.filePaths);
});
} }
}).catch(err => { }).catch(err => {
console.log(err); console.log(err);
@@ -159,10 +147,8 @@ function createWindow () {
console.log(result.canceled); console.log(result.canceled);
console.log(result.filePaths); console.log(result.filePaths);
if (!result.canceled) { if (!result.canceled) {
setImmediate(function() { var focusedWindow = BrowserWindow.getFocusedWindow();
var focusedWindow = BrowserWindow.getFocusedWindow(); focusedWindow.webContents.send('plotFrac',result.filePaths);
focusedWindow.webContents.send('plotFrac',result.filePaths);
});
} }
}).catch(err => { }).catch(err => {
console.log(err); console.log(err);
@@ -184,10 +170,8 @@ function createWindow () {
console.log(result.canceled); console.log(result.canceled);
console.log(result.filePaths); console.log(result.filePaths);
if (!result.canceled) { if (!result.canceled) {
setImmediate(function() { var focusedWindow = BrowserWindow.getFocusedWindow();
var focusedWindow = BrowserWindow.getFocusedWindow(); focusedWindow.webContents.send('plotMean',result.filePaths);
focusedWindow.webContents.send('plotMean',result.filePaths);
});
} }
}).catch(err => { }).catch(err => {
console.log(err); console.log(err);
@@ -247,11 +231,9 @@ ipcMain.on('browseFolder', (event, args) => {
properties:["openDirectory"]} properties:["openDirectory"]}
).then(result => { ).then(result => {
console.log(result) console.log(result)
setImmediate(function() { var focusedWindow = BrowserWindow.getFocusedWindow();
var focusedWindow = BrowserWindow.getFocusedWindow(); focusedWindow.webContents.send('browseFolder',result.filePaths);
focusedWindow.webContents.send('browseFolder',result.filePaths); app.setPath('temp',result.filePaths[0]);
app.setPath('temp',result.filePaths[0]);
});
}).catch(err => { }).catch(err => {
console.log(err); console.log(err);
}) })

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out/make/deb/x64/trimsp_1.0.1_amd64.deb Normal file
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out/make/rpm/x64/TrimSP-1.0.1-1.x86_64.rpm Normal file
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4
package.json
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@@ -1,6 +1,6 @@
{ {
"name": "TrimSP", "name": "TrimSP",
"version": "1.0.2", "version": "1.1.0",
"description": "Trim.SP simulation to calculate stopping profile of implanted probes.", "description": "Trim.SP simulation to calculate stopping profile of implanted probes.",
"main": "main.js", "main": "main.js",
"scripts": { "scripts": {
@@ -13,7 +13,7 @@
"SRIM" "SRIM"
], ],
"author": "Zaher Salman", "author": "Zaher Salman",
"license": "GPL2", "license": "GPL3",
"devDependencies": { "devDependencies": {
"@electron-forge/cli": "^6.0.0-beta.57", "@electron-forge/cli": "^6.0.0-beta.57",
"@electron-forge/maker-deb": "^6.0.0-beta.57", "@electron-forge/maker-deb": "^6.0.0-beta.57",

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trimspNL
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