fische_r ac2fac3f98 allows to switch on pixel coordinates as feature

2023-04-03 13:52:21 +02:00

.~pyTMLS_4D_test.ipynb

last saved version before quota issue

2022-08-08 15:28:34 +02:00

.~test.ipynb

inlcuded image gradient to features

2022-08-05 16:45:09 +02:00

.gitignore

initial commit with gitignore

2022-07-28 08:55:54 +02:00

filter_functions.py

allows to switch on pixel coordinates as feature

2023-04-03 13:52:21 +02:00

interactive.py

put interactive part in own file, to be tested

2023-02-21 14:27:43 +01:00

pyTMLS_3+1D_test_jeremy_data.ipynb

got it running, now allow clf savinf and full segmentation

2022-08-18 11:40:45 +02:00

pyTMLS_3+1D_test.ipynb

not yet working for wood (swelling), needs some sort of time space/correlation

2022-08-12 10:40:51 +02:00

pyTMLS_4D_test.ipynb

last saved version before quota issue

2022-08-08 15:28:34 +02:00

pyTMLS_4D_testv2_interlaces.ipynb

pretty decent for Jeremy's data

2022-08-12 10:41:53 +02:00

pyTMLS_4D_testv2_wood.ipynb

wood segmentation not good for fiber/water long time after filling

2022-08-10 10:47:32 +02:00

pyTMLS_4D_testv2.ipynb

very good on interlaces

2022-08-10 10:45:51 +02:00

segmentation.py

bug fix

2023-02-20 10:18:22 +01:00

start_training.py

extended ML segmentation, performance shit compared to Weka, Hessian somehow prduces NaN

2022-07-28 17:54:53 +02:00

test_dask_framework_all_lazy.ipynb

TODO: store git sha

2022-10-13 15:13:18 +02:00

test_dask_framework-Copy1.ipynb

Merge branch 'master' of https://gitlab.psi.ch/fische_r/pytrainseg

2023-01-17 14:04:52 +01:00

test_GUI.ipynb

made it interactive build on that!

2022-07-29 15:18:11 +02:00

test.ipynb

full workflow to be tested

2022-08-05 13:43:51 +02:00

training_functions.py

wait for persist to finish

2023-03-29 10:04:20 +02:00

S

Description

4D ML machine learning image segmentation in Python migrated from https://gitlab.psi.ch/fcsd_5422/pytrainseg

MIT

16 MiB

Languages

Jupyter Notebook 92.8%

Python 7.1%