slurm submission script

job_submission_01_week.sh

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+#!/bin/bash -l
+#SBATCH --job-name=$extract_stl_for_blender
+#SBATCH --time=6:00:00
+#SBATCH --nodes=1
+#SBATCH --cpus-per-task=16
+#SBATCH --mem=128G
+#SBATCH -p week
+
+
+# Activate conda env
+export PYTHONPATH=''
+#eval "$(/store/empa/em13/fischer/lib/miniconda3/bin/conda shell.bash hook)"
+#conda activate membrane_fingering
+eval "$(/das/home/fische_r/miniconda3/bin/conda shell.bash hook)"
+conda activate base
+
+# debugging flags (optional)
+# export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
+
+
+# Execute command in the container, ipython for debugging to avoid defaul python, change back to python eventually
+# srun python -u train_random.py $ARGS
+srun python -u ~/lib/tomcat-blender/01_extract_surfaces.py -s $1