maerki_f 45ad51a28c Merge branch 'ATEST-315' into 'master'
ATEST-315



See merge request !9
2016-04-14 14:57:33 +02:00
2015-05-27 16:59:20 +02:00
2016-04-14 14:54:22 +02:00
2015-12-14 11:27:08 +01:00
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2015-07-08 16:18:47 +02:00

#Overview

This project provides a REST interface to execute queries on the databuffer.

Requirements

This project requires Java 8 or greater.

Deployment

Use the instructions provided by ch.psi.daq.install to install the application on a server.

Application Properties

Following files define and describe application properties:

It is possible to overwrite properties by defining new values in ${HOME}/.config/daq/queryrest.properties

Maven

Upload jar to the Maven repository (from ch.psi.daq.buildall):

./gradlew ch.psi.daq.queryrest:uploadArchives

DropIt

Upload jar DropIt (from ch.psi.daq.buildall):

./gradlew ch.psi.daq.queryrest:dropIt -x test

Local Instance

DAQLocal provides a local instance of the DAQ system for testing purposes (allowing users/developers to verify their code before they come to PSI to do their research and interact with the DAQ cluster).

REST Interface

The REST interface is accessible through http://data-api.psi.ch/sf.

Query Channel Names

Request

POST http://<host>:<port>/channels

Data

{"regex": "TRFCA|TRFCB","backends": ["databuffer"],"ordering":"asc","reload":true}
Explanation

Example

Command

curl -H "Content-Type: application/json" -X POST -d '{"regex": "TRFCA|TRFCB"}' http://data-api.psi.ch/sf/channels

Response

[
   {
      "backend":"databuffer",
      "channels":[
         "Channel_01",
         "Channel_02",
         "Channel_03"
      ]
   },
   {
      "backend":"archiverappliance",
      "channels":[
         "Channel_01",
         "Channel_04",
         "Channel_05"
      ]
   }
]

Query Range

Queries are applied to a range. The following types of ranges ranges are supported.

By Pulse-Id

"range":{
   "startPulseId":0,
   "endPulseId":100
}
  • startPulseId: The start pulse-id of the range request.
  • endPulseId: The end pulse-id of the range request.

By Date

"range":{
   "startDate":"2015-08-06T18:00:00.000",
   "endDate":"2015-08-06T18:59:59.999",
}
  • startDate: The start date of the time range (ISO8601 format (YYYY-MM-DDThh:mm:ss.sTZD e.g. 1997-07-16T19:20:30.123+02:00 (omitting +02:00 falls back to the local time zone)). Additionally, ISO8601 format up to nano seconds is also supported (e.g. 1997-07-16T19:20:30.123456789+02:00).
  • endDate: The end date of the time range.

By Time

"range":{
   "startSeconds":"0.0",
   "endSeconds":"1.000999999"
}
  • startSeconds: The start time of the range in seconds since January 1, 1970 (the UNIX epoch) as a decimal value including fractional seconds.
  • endSeconds: The end time of the range in seconds since January 1, 1970 (the UNIX epoch) as a decimal value including fractional seconds.

Query Channel Names

The simplest way to define channels is to use an array of channel name Strings.

"channels":[
	"Channel_02",
	"Channel_04"
]

The query interface will automatically select the backend which contains the channel (e.g., databuffer for Channel_02 and archiverappliance for Channel_04. In case name clashes exist, the query interface will use following order of priority: databuffer, archiverappliance and filestorage.

It is also possible to explicitly define the backend to overcome name clashes.

"channels":[
   {
      "name":"Channel_01",
      "backend":"archiverappliance"
   },
   {
      "name":"Channel_01",
      "backend":"databuffer"
   }
]

Query Data

Query request endpoint

GET http://<host>:<port>/query

Request body

A request is performed by sending a valid JSON object in the HTTP request body. The JSON query defines the channels to be queried, the range, and how the data should be aggregated (this is optional but highly recommended).

The following attributes can be specified:

  • channels: Array of channels to be queried (see Query Range).
  • range: The range of the query (see Query Range).
  • ordering: The ordering of the data (see here for possible values).
  • fields: The requested fields (see here for possible values).
  • nrOfBins: Activates data binning. Specifies the number of bins the pulse/time range should be divided into.
  • binSize: Activates data binning. Specifies the number of pulses per bin for pulse-range queries or the number of milliseconds per bin for time-range queries (using number of pulses and number of milliseconds makes this binning strategy consistent between channel with different update frequencies).
  • aggregations: Activates data aggregation. Array of requested aggregations (see here for possible values). These values will be added to the data array response.
  • aggregationType: Specifies the type of aggregation (see here). The default type is value aggregation (e.g., sum([1,2,3])=6). Alternatively, it is possible to define index aggregation for multiple arrays in combination with binning (e.g., sum([1,2,3], [3,2,1]) = [4,4,4]).
  • compression: Defines the compression algorithm to use, default value is none, see all values here)
  • responseFormat: Specifies the format the response of the requested data is in, either in JSON or CSV format, default value JSON, see all values here)

compression: compression of data can be enabled

By default, no data is compressed when transferred from the server to the client. However, compression can be enabled by setting the compression attribute to a value other than none, i.e. to gzip or deflate.

If compression is enabled, we have to tell curl that the data is compressed so that it is being decompressed automatically. curl decompresses the response when the --compressed parameter is set.

responseFormat: data is in JSON by default

Responses can be formatted as CSV or JSON using the responseFormat field. The returned data is JSON-formatted by default.

CSV export does not support index and extrema aggregations.

Example Queries

The following examples build on waveform data (see below). They also work for scalars (consider it as a waveform of length = 1) and images (waveform of length = dimX * dimY).

Data Visualization

[
   {
      "channel":"Channel_01",
      "data":[
         {
            "iocSeconds":"0.000000000",
            "pulseId":0,
            "globalSeconds":"0.000000000",
            "shape":[
               4
            ],
            "value":[1,2,3,4]
         },
         {
            "iocSeconds":"0.010000000",
            "pulseId":1,
            "globalSeconds":"0.010000000",
            "shape":[
               4
            ],
            "value":[2,3,4,5]
         },
         {
            "iocSeconds":"0.020000000",
            "pulseId":2,
            "globalSeconds":"0.020000000",
            "shape":[
               4
            ],
            "value":[3,4,5,6]
         },
         {
            "iocSeconds":"0.030000000",
            "pulseId":3,
            "globalSeconds":"0.030000000",
            "shape":[
               4
            ],
            "value":[4,5,6,7]
         }
      ]
   }
]

Query Examples

Query by Pulse-Id Range
{
   "range":{
      "startPulseId":0,
      "endPulseId":3
   },
   "channels":[
      "Channel_01"
   ]
}
Command
curl  -H "Content-Type: application/json" -X POST -d '{"range":{"startPulseId":0,"endPulseId":3},"channels":["Channel_01"]}' http://data-api.psi.ch/sf/query
Response

See JSON representation of the data above.

Query by Time Range
{
   "range":{
      "startSeconds":"0.0",
      "endSeconds":"0.030999999"
   },
   "channels":[
      "Channel_01"
   ]
}
Command
curl  -H "Content-Type: application/json" -X POST -d '{"range":{"startSeconds":"0.0","endSeconds":"0.030999999"},"channels":["Channel_01"]}' http://data-api.psi.ch/sf/query
Response

See JSON representation of the data above.

Query by Date Range
{
   "range":{
      "startDate":"1970-01-01T01:00:00.000",
      "endDate":"1970-01-01T01:00:00.030"
   },
   "channels":[
      "Channel_01"
   ]
}

Supported format is ISO8601 YYYY-MM-DDThh:mm:ss.sTZD (e.g. 1997-07-16T19:20:30.475+02:00).

Command
curl  -H "Content-Type: application/json" -X POST -d '{"range":{"startDate":"1970-01-01T01:00:00.000","endDate":"1970-01-01T01:00:00.030"},"channels":["Channel_01"]}' http://data-api.psi.ch/sf/query
Response

See JSON representation of the data above.

Querying Archiver Appliance
{
   "range":{
      "startSeconds":"0.0",
      "endSeconds":"0.030999999"
   },
   "channels":[
      {
	      "name": "Channel_01",
	      "backend":"archiverappliance"
      },
      {
	      "name": "Channel_02",
	      "backend":"archiverappliance"
      }
   ]
}

Archiver Appliance supports queries by time range and date range only (as it has no notion about pulse-id).

Command
curl  -H "Content-Type: application/json" -X POST -d '{"range":{"startSeconds":"0.0","endSeconds":"0.030999999"},"channels":[{"name": "Channel_01","backend":"archiverappliance"}]}' http://data-api.psi.ch/sf/query
Response

See JSON representation of the data above.

Query using compression
{
    "compression":"gzip",
    "range":{
        "startPulseId":0,
        "endPulseId":3
     },
     "channels":[
        "Channel_01"
     ]
}

or deflate can be used too:

{
    "compression":"deflate",
    "range":{
        "startPulseId":0,
        "endPulseId":3
     },
     "channels":[
        "Channel_01"
     ]
}
Command (gzip)

The curl command has a --compressed option to decompress data automatically.

curl --compressed -H "Content-Type: application/json" -X POST -d '{"compression":"gzip","range":{"startPulseId":0,"endPulseId":3},"channels":["Channel_01"]}' http://data-api.psi.ch/sf/query
Query setting CSV response format
{
    "responseFormat":"csv",
    "range":{
        "startPulseId":0,
        "endPulseId":4
    },
    "channels":[
        "channel1",
        "channel2"
    ],
    "fields":[
        "channel",
        "pulseId",
        "iocSeconds",
        "globalSeconds",
        "shape",
        "eventCount",
        "value"
    ]
}

It is possible to request the time in seconds (since January 1, 1970 (the UNIX epoch) as a decimal value including fractional seconds - using fields globalSeconds and iocSeconds) or in milliseconds (since January 1, 1970 (the JAVA epoch) - using fields globalMillis and iocMillis)

Command
curl -H "Content-Type: application/json" -X POST -d '{"responseFormat":"csv","range":{"startPulseId":0,"endPulseId":4},"channels":["channel1","channel2"],"fields":["channel","pulseId","iocSeconds","globalSeconds","shape","eventCount","value"]}' http://data-api.psi.ch/sf/query
Response

The response is in CSV.

channel;pulseId;iocSeconds;globalSeconds;shape;eventCount;value
testChannel1;0;0.000000000;0.000000000;[1];1;0
testChannel1;1;0.010000000;0.010000000;[1];1;1
testChannel1;2;0.020000000;0.020000000;[1];1;2
testChannel1;3;0.030000000;0.030000000;[1];1;3
testChannel1;4;0.040000000;0.040000000;[1];1;4
testChannel2;0;0.000000000;0.000000000;[1];1;0
testChannel2;1;0.010000000;0.010000000;[1];1;1
testChannel2;2;0.020000000;0.020000000;[1];1;2
testChannel2;3;0.030000000;0.030000000;[1];1;3
testChannel2;4;0.040000000;0.040000000;[1];1;4
Querying for Specific Fields

Allows for server side optimizations since not all data needs to be retrieved.

{
   "fields":["pulseId","value"],
   "range":{
      "startPulseId":0,
      "endPulseId":3
   },
   "channels":[
      "Channel_01"
   ]
}
Command
curl  -H "Content-Type: application/json" -X POST -d '{"fields":["pulseId","value"],"range":{"startPulseId":0,"endPulseId":3},"channels":["Channel_01"]}' http://data-api.psi.ch/sf/query
Response
[
   {
      "channel":"Channel_01",
      "data":[
         {
            "pulseId":0,
            "value":[1,2,3,4]
         },
         {
            "pulseId":1,
            "value":[2,3,4,5]
         },
         {
            "pulseId":2,
            "value":[3,4,5,6]
         },
         {
            "pulseId":3,
            "value":[4,5,6,7]
         }
      ]
   }
]
Data Ordering
{
   "ordering":"desc",
   "fields":["pulseId","value"],
   "range":{
      "startPulseId":0,
      "endPulseId":3
   },
   "channels":[
      "Channel_01"
   ]
}

Use none in case ordering does not matter (allows for server side optimizations).

Command
curl  -H "Content-Type: application/json" -X POST -d '{"ordering":"desc","fields":["pulseId","value"],"range":{"startPulseId":0,"endPulseId":3},"channels":["Channel_01"]}' http://data-api.psi.ch/sf/query
Response
[
   {
      "channel":"Channel_01",
      "data":[
         {
            "pulseId":3,
            "value":[4,5,6,7]
         },
         {
            "pulseId":2,
            "value":[3,4,5,6]
         },
         {
            "pulseId":1,
            "value":[2,3,4,5]
         },
         {
            "pulseId":0,
            "value":[1,2,3,4]
         }
      ]
   }
]

Value Aggregation
{
   "aggregationType":"value",
   "aggregations":["min","max","mean"],
   "fields":["pulseId","value"],
   "range":{
      "startPulseId":0,
      "endPulseId":3
   },
   "channels":[
      "Channel_01"
   ]
}
Command
curl  -H "Content-Type: application/json" -X POST -d '{"aggregationType":"value","aggregations":["min","max","mean"],"fields":["pulseId","value"],"range":{"startPulseId":0,"endPulseId":3},"channels":["Channel_01"]}' http://data-api.psi.ch/sf/query
Response
[
   {
      "channel":"Channel_01",
      "data":[
         {
            "pulseId":0,
            "value":{
               "min":1.0,
               "max":4.0,
               "mean":2.5
            }
         },
         {
            "pulseId":1,
            "value":{
               "min":2.0,
               "max":5.0,
               "mean":3.5
            }
         },
         {
            "pulseId":2,
            "value":{
               "min":3.0,
               "max":6.0,
               "mean":4.5
            }
         },
         {
            "pulseId":3,
            "value":{
               "min":4.0,
               "max":7.0,
               "mean":5.5
            }
         }
      ]
   }
]

Array value aggregations:

Value Aggregation

Value Aggregation with Binning (nrOfBins)
{
   "nrOfBins":2,
   "aggregationType":"value",
   "aggregations":["min","max","mean"],
   "fields":["pulseId","value"],
   "range":{
      "startPulseId":0,
      "endPulseId":3
   },
   "channels":[
      "Channel_01"
   ]
}
Command
curl  -H "Content-Type: application/json" -X POST -d '{"nrOfBins":2,"aggregationType":"value","aggregations":["min","max","mean"],"fields":["pulseId","value"],"range":{"startPulseId":0,"endPulseId":3},"channels":["Channel_01"]}' http://data-api.psi.ch/sf/query
Response
[
   {
      "channel":"Channel_01",
      "data":[
         {
            "pulseId":0,
            "value":{
               "min":1.0,
               "max":5.0,
               "mean":3.0
            }
         },
         {
            "pulseId":2,
            "value":{
               "min":3.0,
               "max":7.0,
               "mean":5.0
            }
         }
      ]
   }
]

Array value aggregations with additional binning:

Value Aggregation with Binning

Value Aggregation with Binning (binSize)

binSize specifies the number of pulses per bin for pulse-range queries or the number of milliseconds per bin for time-range queries (using number of pulses and number of milliseconds makes this binning strategy consistent between channel with different update frequencies).

{
   "binSize":10,
   "aggregationType":"value",
   "aggregations":["min","max","mean"],
   "fields":["globalMillis","value"],
   "range":{
      "startSeconds":"0.0",
      "endSeconds":"0.030000000"
   },
   "channels":[
      "Channel_01"
   ]
}
Command
curl  -H "Content-Type: application/json" -X POST -d '{"binSize":10,"aggregationType":"value","aggregations":["min","max","mean"],"fields":["globalMillis","value"],"range":{"startSeconds":"0.0","endSeconds":"0.030000000"},"channels":["Channel_01"]}' http://data-api.psi.ch/sf/query
Response
[
   {
      "channel":"Channel_01",
      "data":[
         {
            "globalMillis":0,
            "value":{
               "min":1.0,
               "max":5.0,
               "mean":3.0
            }
         },
         {
            "globalMillis":20,
            "value":{
               "min":3.0,
               "max":7.0,
               "mean":5.0
            }
         }
      ]
   }
]

Array value aggregations with additional binning:

Value Aggregation with Binning

Index Aggregation
{
   "nrOfBins":1,
   "aggregationType":"index",
   "aggregations":["min","max","mean","sum"],
   "fields":["pulseId","value"],
   "range":{
      "startPulseId":0,
      "endPulseId":3
   },
   "channels":[
      "Channel_01"
   ]
}
Command
curl  -H "Content-Type: application/json" -X POST -d '{"nrOfBins":1,"aggregationType":"index","aggregations":["min","max","mean","sum"],"fields":["pulseId","value"],"range":{"startPulseId":0,"endPulseId":3},"channels":["Channel_01"]}' http://data-api.psi.ch/sf/query
Response
[
   {
      "channel":"Channel_01",
      "data":[
         {
            "pulseId":0,
            "value":[
               {
                  "min":1.0,
                  "max":4.0,
                  "mean":2.5,
                  "sum":10.0
               },
               {
                  "min":2.0,
                  "max":5.0,
                  "mean":3.5,
                  "sum":14.0
               },
               {
                  "min":3.0,
                  "max":6.0,
                  "mean":4.5,
                  "sum":18.0
               },
               {
                  "min":4.0,
                  "max":7.0,
                  "mean":5.5,
                  "sum":22.0
               }
            ]
         }
      ]
   }
]

Aggregation of array indices with binning (several nrOfBins are also possible).

Index Aggregation with Binning

{
   "aggregationType":"extrema",
   "aggregations":["min","max","sum"],
   "fields":["pulseId","value"],
   "range":{
      "startPulseId":0,
      "endPulseId":3
   },
   "channels":[
      "Channel_01"
   ]
}
Command
curl  -H "Content-Type: application/json" -X POST -d '{"aggregationType":"extrema","aggregations":["min","max","sum"],"fields":["pulseId","value"],"range":{"startPulseId":0,"endPulseId":3},"channels":["Channel_01"]}' http://data-api.psi.ch/sf/query
Response
[
   {
      "channel":"Channel_01",
      "data":{
         "minima":{
            "min":{
               "value":1.0,
               "event":{
                  "pulseId":0,
                  "value":[1,2,3,4]
               }
            },
            "sum":{
               "value":10.0,
               "event":{
                  "pulseId":0,
                  "value":[1,2,3,4]
               }
            }
         },
         "maxima":{
            "max":{
               "value":7.0,
               "event":{
                  "pulseId":3,
                  "value":[4,5,6,7]
               }
            },
            "sum":{
               "value":22.0,
               "event":{
                  "pulseId":3,
                  "value":[4,5,6,7]
               }
            }
         }
      }
   }
]
Description
Copy of ch.psi.daq.queryrest from git.psi.ch. This contains the documentation of the GLS API.
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