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89b0cfca0d |
17
.gitea/workflows/ippl_gh_merlin7.yml
Normal file
17
.gitea/workflows/ippl_gh_merlin7.yml
Normal file
@ -0,0 +1,17 @@
|
||||
name: IPPL GH Merlin7 Scheduler
|
||||
run-name: IPPL GH Merlin7 Scheduler
|
||||
on:
|
||||
workflow_dispatch:
|
||||
schedule:
|
||||
- cron: "0 1 * * *"
|
||||
|
||||
jobs:
|
||||
checkout:
|
||||
runs-on: merlin7
|
||||
steps:
|
||||
- name: Checkout
|
||||
uses: actions/checkout@v4
|
||||
- name: Sbatch GH GPU script
|
||||
run: |
|
||||
chmod +x .gitea/workflows/sbatch/ippl_gh.sbatch
|
||||
sbatch .gitea/workflows/sbatch/ippl_gh.sbatch
|
17
.gitea/workflows/ippl_gpu_merlin7.yml
Normal file
17
.gitea/workflows/ippl_gpu_merlin7.yml
Normal file
@ -0,0 +1,17 @@
|
||||
name: IPPL GPU Merlin7 Scheduler
|
||||
run-name: IPPL GPU Merlin7 Scheduler
|
||||
on:
|
||||
workflow_dispatch:
|
||||
schedule:
|
||||
- cron: "0 1 * * *"
|
||||
|
||||
jobs:
|
||||
checkout:
|
||||
runs-on: merlin7
|
||||
steps:
|
||||
- name: Checkout
|
||||
uses: actions/checkout@v4
|
||||
- name: Sbatch A100 GPU script
|
||||
run: |
|
||||
chmod +x .gitea/workflows/sbatch/ippl_gpu.sbatch
|
||||
sbatch .gitea/workflows/sbatch/ippl_gpu.sbatch
|
17
.gitea/workflows/opal-x_gh_merlin7.yml
Normal file
17
.gitea/workflows/opal-x_gh_merlin7.yml
Normal file
@ -0,0 +1,17 @@
|
||||
name: OPAL-X GH Merlin7 Scheduler
|
||||
run-name: OPAL-X GH Merlin7 Scheduler
|
||||
on:
|
||||
workflow_dispatch:
|
||||
schedule:
|
||||
- cron: "0 1 * * *"
|
||||
|
||||
jobs:
|
||||
checkout:
|
||||
runs-on: merlin7
|
||||
steps:
|
||||
- name: Checkout
|
||||
uses: actions/checkout@v4
|
||||
- name: Sbatch GH GPU script
|
||||
run: |
|
||||
chmod +x .gitea/workflows/sbatch/opal-x_gh.sbatch
|
||||
sbatch .gitea/workflows/sbatch/opal-x_gh.sbatch
|
17
.gitea/workflows/opal-x_gpu_merlin7.yml
Normal file
17
.gitea/workflows/opal-x_gpu_merlin7.yml
Normal file
@ -0,0 +1,17 @@
|
||||
name: OPAL-X-GPU Merlin7 Scheduler
|
||||
run-name: OPAL-X-GPU Merlin7 Scheduler
|
||||
on:
|
||||
workflow_dispatch:
|
||||
schedule:
|
||||
- cron: "0 1 * * *"
|
||||
|
||||
jobs:
|
||||
checkout:
|
||||
runs-on: merlin7
|
||||
steps:
|
||||
- name: Checkout
|
||||
uses: actions/checkout@v4
|
||||
- name: Sbatch A100 GPU script
|
||||
run: |
|
||||
chmod +x .gitea/workflows/sbatch/opal-x_gpu.sbatch
|
||||
sbatch .gitea/workflows/sbatch/opal-x_gpu.sbatch
|
17
.gitea/workflows/q-e_cpu_merlin7.yml
Normal file
17
.gitea/workflows/q-e_cpu_merlin7.yml
Normal file
@ -0,0 +1,17 @@
|
||||
name: QE-CPU Merlin7 Scheduler
|
||||
run-name: QE-CPU Merlin7 Scheduler
|
||||
on:
|
||||
workflow_dispatch:
|
||||
schedule:
|
||||
- cron: "0 1 * * *"
|
||||
|
||||
jobs:
|
||||
checkout:
|
||||
runs-on: merlin7
|
||||
steps:
|
||||
- name: Checkout
|
||||
uses: actions/checkout@v4
|
||||
- name: Sbatch CPU script
|
||||
run: |
|
||||
chmod +x .gitea/workflows/sbatch/q-e_cpu.sbatch
|
||||
sbatch .gitea/workflows/sbatch/q-e_cpu.sbatch
|
17
.gitea/workflows/q-e_gh_merlin7.yml
Normal file
17
.gitea/workflows/q-e_gh_merlin7.yml
Normal file
@ -0,0 +1,17 @@
|
||||
name: QE-GH Merlin7 Scheduler
|
||||
run-name: QE-GH Merlin7 Scheduler
|
||||
on:
|
||||
workflow_dispatch:
|
||||
schedule:
|
||||
- cron: "0 1 * * *"
|
||||
|
||||
jobs:
|
||||
checkout:
|
||||
runs-on: merlin7
|
||||
steps:
|
||||
- name: Checkout
|
||||
uses: actions/checkout@v4
|
||||
- name: Sbatch GH GPU script
|
||||
run: |
|
||||
chmod +x .gitea/workflows/sbatch/q-e_gh.sbatch
|
||||
sbatch .gitea/workflows/sbatch/q-e_gh.sbatch
|
17
.gitea/workflows/q-e_gpu_merlin7.yml
Normal file
17
.gitea/workflows/q-e_gpu_merlin7.yml
Normal file
@ -0,0 +1,17 @@
|
||||
name: QE-GPU Merlin7 Scheduler
|
||||
run-name: QE-GPU Merlin7 Scheduler
|
||||
on:
|
||||
workflow_dispatch:
|
||||
schedule:
|
||||
- cron: "0 1 * * *"
|
||||
|
||||
jobs:
|
||||
checkout:
|
||||
runs-on: merlin7
|
||||
steps:
|
||||
- name: Checkout
|
||||
uses: actions/checkout@v4
|
||||
- name: Sbatch A100 GPU script
|
||||
run: |
|
||||
chmod +x .gitea/workflows/sbatch/q-e_gpu.sbatch
|
||||
sbatch .gitea/workflows/sbatch/q-e_gpu.sbatch
|
31
.gitea/workflows/sbatch/ippl_gh.sbatch
Executable file
31
.gitea/workflows/sbatch/ippl_gh.sbatch
Executable file
@ -0,0 +1,31 @@
|
||||
#!/bin/bash
|
||||
#SBATCH --job-name="ippl-scheduled-GH-GPU"
|
||||
#SBATCH --output=_scheduler-stdout.txt
|
||||
#SBATCH --error=_scheduler-stderr.txt
|
||||
#SBATCH --partition=gh-daily
|
||||
#SBATCH --nodes=1
|
||||
#SBATCH --ntasks-per-node=16
|
||||
#SBATCH --time=01:00:00
|
||||
#SBATCH --cluster=tgmerlin7
|
||||
#SBATCH --gpus=1
|
||||
#SBATCH --wait
|
||||
|
||||
export SSL_CERT_FILE=/etc/ssl/ca-bundle.pem
|
||||
export REQUESTS_CA_BUNDLE=/etc/ssl/ca-bundle.pem
|
||||
PMODULES_VERSION='2.0.0.2'
|
||||
source /opt/psi/config/profile.bash
|
||||
|
||||
module purge
|
||||
module use Spack unstable
|
||||
module load gcc/13.2.0 openmpi/5.0.3-3lmi-GH200-gpu
|
||||
module load boost/1.82.0-3ns6 fftw/3.3.10 gnutls/3.8.3 googletest/1.14.0 gsl/2.7.1 h5hut/2.0.0rc7 openblas/0.3.26 cmake/3.31.4-u2nm
|
||||
|
||||
git clone https://github.com/IPPL-framework/ippl.git
|
||||
cd ippl
|
||||
|
||||
mkdir build
|
||||
cd build
|
||||
|
||||
cmake -DCMAKE_BUILD_TYPE=Release -DKokkos_ARCH_HOPPER90=ON -DCMAKE_CXX_STANDARD=20 -DIPPL_ENABLE_FFT=ON -DIPPL_ENABLE_TESTS=ON -DUSE_ALTERNATIVE_VARIANT=ON -DIPPL_ENABLE_SOLVERS=ON -DIPPL_ENABLE_ALPINE=True -DIPPL_PLATFORMS=cuda ..
|
||||
make -j 16
|
||||
|
30
.gitea/workflows/sbatch/ippl_gpu.sbatch
Executable file
30
.gitea/workflows/sbatch/ippl_gpu.sbatch
Executable file
@ -0,0 +1,30 @@
|
||||
#!/bin/bash
|
||||
#SBATCH --job-name="ippl-scheduled-A100-GPU"
|
||||
#SBATCH --output=_scheduler-stdout.txt
|
||||
#SBATCH --error=_scheduler-stderr.txt
|
||||
#SBATCH --partition=a100-daily
|
||||
#SBATCH --nodes=1
|
||||
#SBATCH --ntasks-per-node=16
|
||||
#SBATCH --time=01:00:00
|
||||
#SBATCH --cluster=tgmerlin7
|
||||
#SBATCH --gpus=1
|
||||
#SBATCH --wait
|
||||
|
||||
export SSL_CERT_FILE=/etc/ssl/ca-bundle.pem
|
||||
export REQUESTS_CA_BUNDLE=/etc/ssl/ca-bundle.pem
|
||||
PMODULES_VERSION='2.0.0.2'
|
||||
source /opt/psi/config/profile.bash
|
||||
|
||||
module use Spack unstable
|
||||
module load gcc/13.2.0 openmpi/4.1.6-57rc-A100-gpu
|
||||
module load boost/1.82.0-e7gp fftw/3.3.10 gnutls/3.8.3 googletest/1.14.0 gsl/2.8 h5hut/2.0.0rc7 openblas/0.3.26-omp cmake/3.31.6-oe7u
|
||||
|
||||
git clone https://github.com/IPPL-framework/ippl.git
|
||||
cd ippl
|
||||
|
||||
mkdir build
|
||||
cd build
|
||||
|
||||
cmake -DCMAKE_BUILD_TYPE=Release -DKokkos_ARCH_AMPERE80=ON -DCMAKE_CXX_STANDARD=20 -DIPPL_ENABLE_FFT=ON -DIPPL_ENABLE_TESTS=ON -DUSE_ALTERNATIVE_VARIANT=ON -DIPPL_ENABLE_SOLVERS=ON -DIPPL_ENABLE_ALPINE=True -DIPPL_PLATFORMS=cuda ..
|
||||
make -j 16
|
||||
|
32
.gitea/workflows/sbatch/opal-x_gh.sbatch
Executable file
32
.gitea/workflows/sbatch/opal-x_gh.sbatch
Executable file
@ -0,0 +1,32 @@
|
||||
#!/bin/bash
|
||||
#SBATCH --job-name="opal-x-scheduled-GH-GPU"
|
||||
#SBATCH --output=_scheduler-stdout.txt
|
||||
#SBATCH --error=_scheduler-stderr.txt
|
||||
#SBATCH --partition=gh-daily
|
||||
#SBATCH --nodes=1
|
||||
#SBATCH --ntasks-per-node=16
|
||||
#SBATCH --time=01:00:00
|
||||
#SBATCH --cluster=tgmerlin7
|
||||
#SBATCH --gpus=1
|
||||
#SBATCH --wait
|
||||
|
||||
export SSL_CERT_FILE=/etc/ssl/ca-bundle.pem
|
||||
export REQUESTS_CA_BUNDLE=/etc/ssl/ca-bundle.pem
|
||||
PMODULES_VERSION='2.0.0.2'
|
||||
source /opt/psi/config/profile.bash
|
||||
|
||||
module purge
|
||||
module use Spack unstable
|
||||
module load gcc/13.2.0 openmpi/5.0.3-3lmi-GH200-gpu
|
||||
module load boost/1.82.0-3ns6 fftw/3.3.10 gnutls/3.8.3 googletest/1.14.0 gsl/2.7.1 h5hut/2.0.0rc7 openblas/0.3.26 cmake/3.31.4-u2nm
|
||||
|
||||
git clone https://gitlab.psi.ch/OPAL/opal-x/src.git opal-x
|
||||
cd opal-x
|
||||
./gen_OPALrevision
|
||||
|
||||
mkdir build
|
||||
cd build
|
||||
|
||||
cmake -DCMAKE_BUILD_TYPE=Release -DKokkos_ARCH_HOPPER90=ON -DCMAKE_CXX_STANDARD=20 -DIPPL_ENABLE_FFT=ON -DIPPL_ENABLE_TESTS=OFF -DUSE_ALTERNATIVE_VARIANT=ON -DIPPL_ENABLE_SOLVERS=ON -DIPPL_ENABLE_ALPINE=True -DIPPL_PLATFORMS=cuda ..
|
||||
make -j 16
|
||||
|
31
.gitea/workflows/sbatch/opal-x_gpu.sbatch
Executable file
31
.gitea/workflows/sbatch/opal-x_gpu.sbatch
Executable file
@ -0,0 +1,31 @@
|
||||
#!/bin/bash
|
||||
#SBATCH --job-name="opal-x-scheduled-A100-GPU"
|
||||
#SBATCH --output=_scheduler-stdout.txt
|
||||
#SBATCH --error=_scheduler-stderr.txt
|
||||
#SBATCH --partition=a100-daily
|
||||
#SBATCH --nodes=1
|
||||
#SBATCH --ntasks-per-node=16
|
||||
#SBATCH --time=01:00:00
|
||||
#SBATCH --cluster=tgmerlin7
|
||||
#SBATCH --gpus=1
|
||||
#SBATCH --wait
|
||||
|
||||
export SSL_CERT_FILE=/etc/ssl/ca-bundle.pem
|
||||
export REQUESTS_CA_BUNDLE=/etc/ssl/ca-bundle.pem
|
||||
PMODULES_VERSION='2.0.0.2'
|
||||
source /opt/psi/config/profile.bash
|
||||
|
||||
module use Spack unstable
|
||||
module load gcc/13.2.0 openmpi/4.1.6-57rc-A100-gpu
|
||||
module load boost/1.82.0-e7gp fftw/3.3.10 gnutls/3.8.3 googletest/1.14.0 gsl/2.8 h5hut/2.0.0rc7 openblas/0.3.26-omp cmake/3.31.6-oe7u
|
||||
|
||||
git clone https://gitlab.psi.ch/OPAL/opal-x/src.git opal-x
|
||||
cd opal-x
|
||||
./gen_OPALrevision
|
||||
|
||||
mkdir build
|
||||
cd build
|
||||
|
||||
cmake -DCMAKE_BUILD_TYPE=Release -DKokkos_ARCH_AMPERE80=ON -DCMAKE_CXX_STANDARD=20 -DIPPL_ENABLE_FFT=ON -DIPPL_ENABLE_TESTS=OFF -DIPPL_ENABLE_SOLVERS=ON -DIPPL_ENABLE_ALPINE=True -DIPPL_PLATFORMS=cuda ..
|
||||
make -j 16
|
||||
|
25
.gitea/workflows/sbatch/q-e_cpu.sbatch
Executable file
25
.gitea/workflows/sbatch/q-e_cpu.sbatch
Executable file
@ -0,0 +1,25 @@
|
||||
#!/bin/bash
|
||||
#SBATCH --job-name="qe-scheduled-CPU"
|
||||
#SBATCH --output=_scheduler-stdout.txt
|
||||
#SBATCH --error=_scheduler-stderr.txt
|
||||
#SBATCH --partition=daily
|
||||
#SBATCH --nodes=1
|
||||
#SBATCH --ntasks-per-node=16
|
||||
#SBATCH --time=01:00:00
|
||||
#SBATCH --cluster=tmerlin7
|
||||
#SBATCH --wait
|
||||
|
||||
export SSL_CERT_FILE=/etc/ssl/ca-bundle.pem
|
||||
export REQUESTS_CA_BUNDLE=/etc/ssl/ca-bundle.pem
|
||||
PMODULES_VERSION='2.0.0.2'
|
||||
source /opt/psi/config/profile.bash
|
||||
|
||||
module use Spack unstable
|
||||
module load gcc/12.3 openmpi/main-syah fftw/3.3.10.6-omp hdf5/1.14.5-t46c openblas/0.3.29-omp cmake/3.31.6-oe7u
|
||||
|
||||
git clone https://gitlab.com/QEF/q-e.git
|
||||
cd q-e
|
||||
mkdir build
|
||||
cd build
|
||||
cmake -DQE_ENABLE_MPI:BOOL=ON -DQE_ENABLE_OPENMP:BOOL=ON -DCMAKE_C_COMPILER:STRING=mpicc -DCMAKE_Fortran_COMPILER:STRING=mpif90 -DQE_ENABLE_HDF5:BOOL=ON ..
|
||||
make -j 16
|
27
.gitea/workflows/sbatch/q-e_gh.sbatch
Executable file
27
.gitea/workflows/sbatch/q-e_gh.sbatch
Executable file
@ -0,0 +1,27 @@
|
||||
#!/bin/bash
|
||||
#SBATCH --job-name="qe-scheduled-GH-GPU"
|
||||
#SBATCH --output=_scheduler-stdout.txt
|
||||
#SBATCH --error=_scheduler-stderr.txt
|
||||
#SBATCH --partition=gh-daily
|
||||
#SBATCH --nodes=1
|
||||
#SBATCH --ntasks-per-node=16
|
||||
#SBATCH --time=01:00:00
|
||||
#SBATCH --cluster=tgmerlin7
|
||||
#SBATCH --gpus=1
|
||||
#SBATCH --wait
|
||||
|
||||
export SSL_CERT_FILE=/etc/ssl/ca-bundle.pem
|
||||
export REQUESTS_CA_BUNDLE=/etc/ssl/ca-bundle.pem
|
||||
PMODULES_VERSION='2.0.0.2'
|
||||
source /opt/psi/config/profile.bash
|
||||
|
||||
module use Spack unstable
|
||||
module load nvhpc/25.3 openmpi/5.0.7-e3bf-GH200-gpu fftw/3.3.10-sfpw-omp hdf5/develop-2.0-ztvo nvpl-blas/0.4.0.1-3zpg nvpl-lapack/0.3.0-ymy5 netlib-scalapack/2.2.2-qrhq cmake/3.31.6-5dl7
|
||||
|
||||
module load git/2.42.0-y4e4
|
||||
git clone https://gitlab.com/QEF/q-e.git
|
||||
cd q-e
|
||||
mkdir build
|
||||
cd build
|
||||
cmake -DQE_ENABLE_MPI:BOOL=ON -DQE_ENABLE_OPENMP:BOOL=ON -DQE_ENABLE_SCALAPACK:BOOL=ON -DQE_ENABLE_CUDA:BOOL=ON -DQE_ENABLE_MPI_GPU_AWARE:BOOL=ON -DQE_ENABLE_OPENACC:BOOL=ON -DCMAKE_C_COMPILER:STRING=mpicc -DCMAKE_Fortran_COMPILER:STRING=mpif90 -DQE_ENABLE_HDF5:BOOL=ON ..
|
||||
make -j 16
|
25
.gitea/workflows/sbatch/q-e_gpu.sbatch
Executable file
25
.gitea/workflows/sbatch/q-e_gpu.sbatch
Executable file
@ -0,0 +1,25 @@
|
||||
#!/bin/bash
|
||||
#SBATCH --job-name="qe-scheduled-A100-GPU"
|
||||
#SBATCH --output=_scheduler-stdout.txt
|
||||
#SBATCH --error=_scheduler-stderr.txt
|
||||
#SBATCH --partition=a100-daily
|
||||
#SBATCH --nodes=1
|
||||
#SBATCH --ntasks-per-node=16
|
||||
#SBATCH --time=01:00:00
|
||||
#SBATCH --cluster=tgmerlin7
|
||||
#SBATCH --gpus=1
|
||||
#SBATCH --wait
|
||||
|
||||
export SSL_CERT_FILE=/etc/ssl/ca-bundle.pem
|
||||
export REQUESTS_CA_BUNDLE=/etc/ssl/ca-bundle.pem
|
||||
PMODULES_VERSION='2.0.0.2'
|
||||
source /opt/psi/config/profile.bash
|
||||
|
||||
module use Spack unstable
|
||||
module load nvhpc/25.3 openmpi/main-6bnq-A100-gpu fftw/3.3.10.6-qbxu-omp hdf5/develop-2.0-rjgu netlib-scalapack/2.2.2-3hgw cmake/3.31.6-oe7u
|
||||
git clone https://gitlab.com/QEF/q-e.git
|
||||
cd q-e
|
||||
mkdir build
|
||||
cd build
|
||||
cmake -DQE_ENABLE_MPI:BOOL=ON -DQE_ENABLE_OPENMP:BOOL=ON -DQE_ENABLE_SCALAPACK:BOOL=ON -DQE_ENABLE_CUDA:BOOL=ON -DQE_ENABLE_MPI_GPU_AWARE:BOOL=ON -DQE_ENABLE_OPENACC:BOOL=ON -DCMAKE_C_COMPILER:STRING=mpicc -DCMAKE_Fortran_COMPILER:STRING=mpif90 -DQE_ENABLE_HDF5:BOOL=ON ..
|
||||
make -j 16
|
@ -1,32 +0,0 @@
|
||||
stages: [build_test]
|
||||
|
||||
variables:
|
||||
GIT_STRATEGY: clone
|
||||
MAX_JOB_NB: 4
|
||||
SPACK_BRANCH: develop
|
||||
SPACK_PCKG: ffbidx
|
||||
SPACK_PCKG_VERSION: main
|
||||
SPACK_REPO: https://github.com/spack/spack.git
|
||||
|
||||
build_test:
|
||||
tags:
|
||||
- merlin
|
||||
stage: build_test
|
||||
script:
|
||||
- git clone ${SPACK_REPO} -b ${SPACK_BRANCH}
|
||||
- . "./spack/share/spack/setup-env.sh"
|
||||
- source /opt/psi/config/profile.bash
|
||||
- module load git-lfs
|
||||
- spack clean -a # Make sure spack doesn't have any caches left
|
||||
- rm -rf /scratch/${USER}/spack-dev/${SPACK_PCKG} # Remove previous packages
|
||||
- spack uninstall -Ray
|
||||
- SPACK_PCKG_LOWERCASE=$(echo "${SPACK_PCKG,,}")
|
||||
- if [[ "$SPACK_PCKG_LOWERCASE" == "hiqsimulator" ]]; then
|
||||
- SPACK_PCKG_LOWERCASE="py-$SPACK_PCKG_LOWERCASE"
|
||||
- fi
|
||||
- spack env activate --without-view env/$(spack arch -o)/${SPACK_PCKG_LOWERCASE}
|
||||
- spack develop --path /scratch/\$user/spack-dev/${SPACK_PCKG} --force ${SPACK_PCKG_LOWERCASE}@${SPACK_PCKG_VERSION}
|
||||
- spack install -j ${MAX_JOB_NB}
|
||||
- spack load
|
||||
# - JOB_ID=$(sbatch --parsable ../test/run.slurm)
|
||||
# - cat slurm-${JOB_ID}.out
|
278
README.md
278
README.md
@ -2,68 +2,260 @@
|
||||
|
||||
[Official Spack documentation](https://spack.readthedocs.io/en/latest/)
|
||||
|
||||
## How to use on Merlin7
|
||||
## How to use on Merlin systems (Merlin6/Merlin7/Ra)
|
||||
|
||||
### Install your own software
|
||||
```bash
|
||||
# Check if your package is already in Spack
|
||||
user@login001:~> spack list $pkg_name # e.g opal
|
||||
Load the spack module
|
||||
|
||||
# Check the package variants you want to set e.g +cuda +openmp ^openmpi ...
|
||||
user@login001:~> spack info $pkg_name # e.g opal
|
||||
|
||||
# Check the whole dependency tree of your spec and
|
||||
# if you don't need to set more variants
|
||||
user@login001:~> spack spec $pkg_name@version +variant1 ^dep1@version ...
|
||||
|
||||
# e.g spack spec opal@2022.1%gcc@7.5.0 +mithra ~python ^openmpi@4.1.6 ^openblas
|
||||
|
||||
# Install your package
|
||||
user@login001:~> spack install $pkg_name@version +variant1 ^dep1@version1
|
||||
|
||||
# Load your package
|
||||
user@login001:~> spack load $pkg_name@version +variant1 ^dep1@version1
|
||||
|
||||
# Submit your script
|
||||
user@login001:~> sbatch batch.script
|
||||
```shell
|
||||
[stable] user@login001:~> module load spack
|
||||
```
|
||||
|
||||
### Develop your own software
|
||||
```bash
|
||||
# Check if your package is already in Spack
|
||||
user@login001:~> spack list $pkg_name # e.g opal
|
||||
Voilà you're done you can use Spack! :)
|
||||
|
||||
# Check the package variants you want to set e.g +cuda +openmp ^openmpi ...
|
||||
user@login001:~> spack info $pkg_name # e.g opal
|
||||
+ Side note: the default software stack loaded for you is stable, which might not contain all the packages you're looking for, </br>
|
||||
so if you want to use the unstable software stack switch to it using:
|
||||
|
||||
# Create your own env and load it
|
||||
user@login001:~> spack env activate --create -p myenv
|
||||
```shell
|
||||
spack env activate -p unstable
|
||||
```
|
||||
|
||||
# Add the spec you want to build to your environement
|
||||
user@login001:~> spack add $pkg_name@version +variant1 ^dep1@version ...
|
||||
## Find out what's already installed
|
||||
|
||||
# e.g spack add opal@master%gcc@7.5.0 +mithra ~python ^openmpi@4.1.6 ^openblas
|
||||
```shell
|
||||
[unstable] user@login001:~> spack find
|
||||
==> In environment unstable
|
||||
==> 1 root specs
|
||||
- []
|
||||
|
||||
# Tell Spack you want to develop locally under
|
||||
# /afs/psi.ch/sys/spack.x86_64_cos3.0/user/$USER/spack-environment/$pkg_name
|
||||
user@login001:~> spack develop $pkg_name@version
|
||||
==> Included specs
|
||||
-- no arch / gcc ------------------------------------------------
|
||||
gromacs%gcc
|
||||
|
||||
# Install the package locally
|
||||
user@login001:~> spack install # first time, then you can just use make directly
|
||||
-- no arch / gcc@12.3.0 -----------------------------------------
|
||||
cp2k@2024.1%gcc@12.3.0 opal@master%gcc@12.3.0 py-alphafold@2.3.2%gcc@12.3.0
|
||||
cp2k@2024.1%gcc@12.3.0 py-alphafold@2.3.2%gcc@12.3.0 quantum-espresso@7.3.1%gcc@12.3.0
|
||||
|
||||
# Load your package
|
||||
user@login001:~> spack load $pkg_name@version +variant1 ^dep1@version1
|
||||
-- no arch / oneapi@2024.1.0 ------------------------------------
|
||||
gromacs@2024.1%oneapi@2024.1.0
|
||||
|
||||
# Submit your script
|
||||
user@login001:~> sbatch batch.script
|
||||
==> Installed packages
|
||||
-- linux-rhel7-x86_64 / gcc@4.8.5 -------------------------------
|
||||
autoconf@2.72 curl@8.7.1 gdbm@1.23 libffi@3.4.6 mpfr@4.2.1 pkg-config@0.29.2 readline@8.2
|
||||
autoconf@2.72 diffutils@3.10 gettext@0.19.8.1 libidn2@2.3.7 mpfr@4.2.1 pkg-config@0.29.2 sqlite@3.43.2
|
||||
autoconf-archive@2023.02.20 diffutils@3.10 gettext@0.19.8.1 libmd@1.0.4 ncurses@6.5 py-fypp@3.1 texinfo@7.0.3
|
||||
autoconf-archive@2023.02.20 expat@2.6.2 git@2.42.0 libpciaccess@0.17 ncurses@6.5 py-fypp@3.1 util-linux-uuid@2.36.2
|
||||
automake@1.16.5 findutils@4.9.0 glibc@2.17 libsigsegv@2.14 nghttp2@1.57.0 py-pip@23.1.2 util-macros@1.19.3
|
||||
automake@1.16.5 findutils@4.9.0 glibc@2.17 libsigsegv@2.14 ninja@1.11.1 py-setuptools@59.4.0 xz@5.4.6
|
||||
berkeley-db@18.1.40 flex@2.6.3 gmake@4.4.1 libtool@2.4.7 numactl@2.0.14 py-wheel@0.41.2 zlib-ng@2.1.6
|
||||
berkeley-db@18.1.40 gawk@5.3.0 gmake@4.4.1 libunistring@1.2 nvhpc@24.3 python@3.8.18 zlib-ng@2.1.6
|
||||
binutils@2.42 gawk@5.3.0 gmp@6.2.1 libxcrypt@4.4.35 openssh@9.7p1 python@3.9.18 zstd@1.5.6
|
||||
binutils@2.42 gcc@12.3.0 gmp@6.2.1 libxml2@2.10.3 openssl@3.3.0 python@3.11.7 zstd@1.5.6
|
||||
binutils@2.42 gcc@12.3.0 krb5@1.20.1 m4@1.4.19 openssl@3.3.0 python-venv@1.0
|
||||
bison@3.8.2 gcc-runtime@4.8.5 libbsd@0.12.1 m4@1.4.19 pcre2@10.43 python-venv@1.0
|
||||
bzip2@1.0.8 gcc-runtime@4.8.5 libedit@3.1-20230828 mpc@1.3.1 perl@5.38.0 re2c@2.2
|
||||
bzip2@1.0.8 gdbm@1.23 libevent@2.1.12 mpc@1.3.1 perl@5.38.0 readline@8.2
|
||||
|
||||
-- linux-rhel7-x86_64 / gcc@12.3.0 ------------------------------
|
||||
abseil-cpp@20240116.2 libogg@1.3.5 py-beniget@0.3.0 py-ml-collections@0.1.0 py-tabulate@0.8.9
|
||||
amrex@18.07 libpng@1.6.39 py-biopython@1.79 py-networkx@2.7.1 py-tensorboard@2.11.2
|
||||
aria2@1.37.0 libssh2@1.11.0 py-bottleneck@1.3.2 py-numexpr@2.8.4 py-tensorboard-data-server@0.6.1
|
||||
boost@1.85.0 libtheora@1.1.1 py-cachetools@5.2.0 py-numpy@1.17.5 py-tensorboard-plugin-wit@1.8.1
|
||||
boost@1.85.0 libxc@6.2.2 py-certifi@2023.7.22 py-numpy@1.21.6 py-tensorflow@2.11.0
|
||||
c-ares@1.27.0 libxsmm@1.17 py-charset-normalizer@3.3.0 py-oauthlib@3.2.2 py-termcolor@1.1.0
|
||||
cmake@3.27.9 libyaml@0.2.5 py-chex@0.0.7 py-opt-einsum@3.3.0 py-tomli@2.0.1
|
||||
cp2k@2024.1 llvm@16.0.6 py-contextlib2@21.6.0 py-packaging@23.1 py-toolz@0.12.0
|
||||
cp2k@2024.1 lua@5.3.6 py-cython@0.29.36 py-pandas@1.3.4 py-typing-extensions@4.8.0
|
||||
cuda@12.4.0 lz4@1.9.4 py-decorator@5.1.1 py-pdbfixer@1.7 py-urllib3@1.26.12
|
||||
fftw@3.3.10 mesa-glu@9.0.2 py-dm-haiku@0.0.9 py-pip@23.0 py-websocket-client@1.6.3
|
||||
fftw@3.3.10 mesa18@18.3.6 py-dm-tree@0.1.6 py-pip@23.1.2 py-werkzeug@2.0.2
|
||||
freetype@2.10.2 metis@5.1.0 py-docker@5.0.3 py-ply@3.11 py-wheel@0.37.1
|
||||
gcc-runtime@12.3.0 mithra@2.0 py-etils@0.9.0 py-poetry-core@1.8.1 py-wheel@0.41.2
|
||||
gcc-runtime@12.3.0 netlib-scalapack@2.2.0 py-flatbuffers@23.5.26 py-protobuf@3.19.4 py-wrapt@1.15.0
|
||||
gettext@0.19.8.1 opal@master py-flit-core@3.9.0 py-pyasn1@0.4.8 py-zipp@3.17.0
|
||||
gl2ps@1.4.2 openblas@0.3.25 py-gast@0.4.0 py-pyasn1-modules@0.2.8 python@3.8.18
|
||||
googletest@1.12.1 openblas@0.3.26 py-google-auth@2.27.0 py-pybind11@2.12.0 python@3.11.7
|
||||
gsl@2.7.1 openblas@0.3.26 py-google-auth-oauthlib@0.4.6 py-pytest-runner@6.0.0 python-venv@1.0
|
||||
h5hut@2.0.0rc6 openjdk@11.0.20.1_1 py-google-pasta@0.2.0 py-python-dateutil@2.8.2 python-venv@1.0
|
||||
hdf5@1.12.3 openmm@7.5.1 py-grpcio@1.60.1 py-pythran@0.9.11 quantum-espresso@7.3.1
|
||||
hdf5@1.14.3 openmpi@4.1.6 py-h5py@3.11.0 py-pytz@2023.3 re2@2023-09-01
|
||||
hdf5@1.14.3 openmpi@4.1.6 py-idna@3.4 py-pyyaml@6.0 rust-bootstrap@1.78.0
|
||||
hh-suite@3.3.0 osmesa@11.2.0 py-immutabledict@2.2.1 py-requests@2.31.0 slurm@23-11-0-1
|
||||
hmmer@3.4 parmetis@4.0.3 py-importlib-resources@5.12.0 py-requests-oauthlib@1.3.1 swig@4.1.1
|
||||
hwloc@2.9.1 pcre@8.45 py-jax@0.3.25 py-rsa@4.9 trilinos@13.4.0
|
||||
jsoncpp@1.9.5 perl-data-dumper@2.173 py-jaxlib@0.3.25 py-scipy@1.7.0 unzip@6.0
|
||||
kalign@3.4.0 protobuf@3.19.4 py-jmp@0.0.2 py-setuptools@57.4.0 zip@3.0
|
||||
libgcrypt@1.10.3 py-absl-py@1.0.0 py-libclang@16.0.0 py-setuptools@69.2.0
|
||||
libgpg-error@1.49 py-alphafold@2.3.2 py-mako@1.2.4 py-setuptools@69.2.0
|
||||
libint@2.6.0 py-alphafold@2.3.2 py-markdown@3.3.4 py-setuptools-scm@8.0.4
|
||||
libjpeg@9f py-astunparse@1.6.3 py-markupsafe@2.1.3 py-six@1.16.0
|
||||
|
||||
-- linux-rhel7-x86_64 / oneapi@2024.1.0 -------------------------
|
||||
gromacs@2024.1 hwloc@2.9.1 intel-oneapi-mkl@2024.0.0 intel-oneapi-runtime@2024.1.0 intel-tbb@2021.9.0 openmpi@4.1.6 slurm@23-11-0-1
|
||||
==> 257 installed packages
|
||||
```
|
||||
|
||||
The included specs and installed packages sections shows you all the packages that are pre-installed for you. </br>
|
||||
In case of a package having multiple installations, the following command helps you to find out which software you're interested about. </br>
|
||||
|
||||
For example let's say you are interested in py-alphafold but only in the gpu version; do:
|
||||
|
||||
```
|
||||
[unstable] user@login001:~> spack find -vl py-alphafold
|
||||
==> In environment unstable
|
||||
==> 1 root specs
|
||||
- dpjaszc visit
|
||||
|
||||
==> Included specs
|
||||
-- no arch / gcc ------------------------------------------------
|
||||
------- gromacs%gcc
|
||||
|
||||
-- no arch / gcc@12.3.0 -----------------------------------------
|
||||
------- cp2k@2024.1%gcc@12.3.0 ------- opal@master%gcc@12.3.0 ------- py-alphafold@2.3.2%gcc@12.3.0
|
||||
------- cp2k@2024.1%gcc@12.3.0 ------- py-alphafold@2.3.2%gcc@12.3.0 ------- quantum-espresso@7.3.1%gcc@12.3.0
|
||||
|
||||
-- no arch / oneapi@2024.1.0 ------------------------------------
|
||||
------- gromacs@2024.1%oneapi@2024.1.0
|
||||
|
||||
==> Installed packages
|
||||
-- linux-rhel7-x86_64 / gcc@12.3.0 ------------------------------
|
||||
rrfdppp py-alphafold@2.3.2~cuda build_system=python_pip tqziprv py-alphafold@2.3.2+cuda build_system=python_pip cuda_arch=60
|
||||
==> 2 installed packages
|
||||
```
|
||||
|
||||
As you can see there are two installation of py-alphafold, one with +cuda and one without. </br>
|
||||
In this particular example, there is only one variant that interests you, so you can do:
|
||||
|
||||
``` shell
|
||||
spack load py-alphafold +cuda
|
||||
```
|
||||
|
||||
However if multiple variants are interesting to you and you don't want to have to cite all of them you can do:
|
||||
|
||||
``` shell
|
||||
spack load /tqziprv # refer to the installation with its hash directly.
|
||||
```
|
||||
|
||||
## Install your own software
|
||||
|
||||
1. Check if your package is already implemented in Spack. <br/>
|
||||
You can also use the following website: https://packages.spack.io/
|
||||
|
||||
```shell
|
||||
spack list $pkg_name # e.g opal
|
||||
```
|
||||
|
||||
2. Check the package variants you want to set e.g +cuda +openmp ^openmpi ...
|
||||
|
||||
```shell
|
||||
spack info $pkg_name # e.g opal
|
||||
```
|
||||
|
||||
3. Add your package to your personal environment
|
||||
|
||||
```shell
|
||||
spack add $pkg_name@version +variant1 ^dep1@version1
|
||||
```
|
||||
|
||||
+ If you want to install from local source clone your source under <br/>
|
||||
/afs/psi.ch/sys/spack/user/$USER/spack-environment/$pkg_name <br/>
|
||||
and tell Spack you want to use it using:
|
||||
|
||||
```shell
|
||||
spack develop $pkg_name@version # Skip this if you don't want to develop from local source
|
||||
```
|
||||
4. Check the whole dependency tree of your spec and <br/>
|
||||
if you don't need to set more variants
|
||||
|
||||
```shell
|
||||
spack concretize
|
||||
```
|
||||
|
||||
5. Install the packages in your environment
|
||||
|
||||
```shell
|
||||
spack install # -v for verbose
|
||||
```
|
||||
|
||||
6. Load your package
|
||||
|
||||
```shell
|
||||
spack load $pkg_name@version +variant1 ^dep1@version1
|
||||
```
|
||||
|
||||
7. Submit your script
|
||||
|
||||
```shell
|
||||
sbatch batch.script
|
||||
```
|
||||
## Switching between environments
|
||||
|
||||
There are two environment available to users; stable and unstable. <br/>
|
||||
The first one is loaded by default when loading the module. <br/>
|
||||
If you want to switch between the two and use different software stack you can use the following command:
|
||||
|
||||
```shell
|
||||
spack env activate -p unstable # or stable
|
||||
```
|
||||
|
||||
## Managing your environments
|
||||
|
||||
When adding the following command you actually add a package to your own software stack;
|
||||
|
||||
```shell
|
||||
spack add $pkg_name@version +variant1 ^dep1@version1
|
||||
```
|
||||
|
||||
You can check which package will be concretized and are in your environment using;
|
||||
|
||||
```shell
|
||||
[unstable] user@login001:~> spack find
|
||||
==> In environment unstable
|
||||
==> 1 root specs
|
||||
- visit ~adios2+vtkm+gui
|
||||
|
||||
==> Included specs
|
||||
-- no arch / gcc ------------------------------------------------
|
||||
gromacs%gcc
|
||||
|
||||
-- no arch / gcc@12.3.0 -----------------------------------------
|
||||
cp2k@2024.1%gcc@12.3.0 opal@master%gcc@12.3.0 py-alphafold@2.3.2%gcc@12.3.0
|
||||
cp2k@2024.1%gcc@12.3.0 py-alphafold@2.3.2%gcc@12.3.0 quantum-espresso@7.3.1%gcc@12.3.0
|
||||
|
||||
-- no arch / oneapi@2024.1.0 ------------------------------------
|
||||
gromacs@2024.1%oneapi@2024.1.0
|
||||
|
||||
==> Installed packages
|
||||
...
|
||||
==> 257 installed packages
|
||||
```
|
||||
|
||||
The root spec is the specs that are personal to you and that will be concretized and installed. <br/>
|
||||
The installed packages are either packages that were previously installed by admins or packages that you already installed but that are not root. <br/>
|
||||
|
||||
If you want to remove this package from your personal env, you can use the following command: <br/>
|
||||
|
||||
```shell
|
||||
spack rm $pkg_name@version +variant1 ^dep1@version1
|
||||
```
|
||||
|
||||
or
|
||||
|
||||
```shell
|
||||
[stable] user@login001:~> spack config edit
|
||||
spack:
|
||||
...
|
||||
specs:
|
||||
-- - visit~adios2+gui+vtkm ^harfbuzz%gcc@12.3.0
|
||||
++ []
|
||||
...
|
||||
```
|
||||
and remove it manually from the spec list.
|
||||
|
||||
## How to use on other systems
|
||||
|
||||
### Install Spack
|
||||
|
||||
```bash
|
||||
```shell
|
||||
user@supersystem:~> cd /scratch/$USER
|
||||
|
||||
user@supersystem:~> git clone -c feature.manyFiles=true https://github.com/spack/spack.git
|
||||
|
1
env/rhel7/x86_64/admin/stable/spack.lock
vendored
Normal file
1
env/rhel7/x86_64/admin/stable/spack.lock
vendored
Normal file
File diff suppressed because one or more lines are too long
41
env/rhel7/x86_64/admin/stable/spack.yaml
vendored
41
env/rhel7/x86_64/admin/stable/spack.yaml
vendored
@ -1,20 +1,39 @@
|
||||
---
|
||||
spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
config:
|
||||
allow_sgid: false
|
||||
build_stage:
|
||||
- $spack/user/$user/spack-stage
|
||||
install_tree:
|
||||
root: $spack/opt/spack/stable
|
||||
include_concrete:
|
||||
- $spack/spack-psi/env/$os/$target_family/admin/unstable
|
||||
definitions:
|
||||
- compilers:
|
||||
- gcc@=12.3.0
|
||||
- intel-oneapi-compilers@=2024.1.0
|
||||
- gcc_4.8.5:
|
||||
- fpart@1.6.0/lcygtky
|
||||
- gcc_12.3.0_openmpi:
|
||||
- opal@master/l4dkgyf
|
||||
include:
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/compilers.yaml
|
||||
- $spack/../spack-psi/env/rhel7/$target_family/sysconfigs/packages.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel8/x86_64/admin/stable
|
||||
mirrors:
|
||||
local_stable: file:///afs/psi.ch/software/spack/stable
|
||||
local_unstable: file:///afs/psi.ch/software/spack/unstable
|
||||
specs: []
|
||||
local_psi: file:///afs/psi.ch/software/spack/testing
|
||||
modules:
|
||||
default:
|
||||
roots:
|
||||
tcl: $spack/opt/spack/stable/modulefiles
|
||||
lmod:
|
||||
core_compilers:
|
||||
- gcc@=4.8.5
|
||||
specs:
|
||||
- matrix:
|
||||
- [$compilers]
|
||||
- ['%gcc@4.8.5']
|
||||
- matrix:
|
||||
- [$gcc_4.8.5]
|
||||
- ['%gcc@4.8.5']
|
||||
- matrix:
|
||||
- [$gcc_12.3.0_openmpi]
|
||||
- [^openmpi%gcc]
|
||||
- ['%gcc@12.3.0']
|
||||
view: false
|
||||
|
25
env/rhel7/x86_64/admin/testing/spack.yaml
vendored
25
env/rhel7/x86_64/admin/testing/spack.yaml
vendored
@ -1,24 +1,21 @@
|
||||
---
|
||||
spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
config:
|
||||
allow_sgid: false
|
||||
build_stage:
|
||||
- $spack/user/$user/spack-stage
|
||||
install_tree:
|
||||
root: $spack/opt/spack/testing
|
||||
upstreams:
|
||||
spack-instance-1:
|
||||
install_tree: $spack/opt/spack/stable
|
||||
spack-instance-2:
|
||||
install_tree: $spack/opt/spack/unstable
|
||||
# Strongly adviced to avoid problems with buildcaches
|
||||
padded_length: 256
|
||||
include:
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/compilers.yaml
|
||||
- $spack/../spack-psi/env/rhel7/$target_family/sysconfigs/packages.yaml
|
||||
#include_concrete:
|
||||
#- /afs/psi.ch/sys/spack/spack-psi/env/rhel8/x86_64/admin/testing
|
||||
mirrors:
|
||||
local_unstable: file:///afs/psi.ch/software/spack/unstable
|
||||
local_testing: file:///afs/psi.ch/software/spack/testing
|
||||
local_psi: file:///afs/psi.ch/software/spack/testing
|
||||
modules:
|
||||
default:
|
||||
roots:
|
||||
tcl: $spack/opt/spack/testing/modulefiles
|
||||
specs:
|
||||
- gcc@12.3.0
|
||||
- opencv
|
||||
view: false
|
||||
|
1
env/rhel7/x86_64/admin/unstable/spack.lock
vendored
Normal file
1
env/rhel7/x86_64/admin/unstable/spack.lock
vendored
Normal file
File diff suppressed because one or more lines are too long
50
env/rhel7/x86_64/admin/unstable/spack.yaml
vendored
50
env/rhel7/x86_64/admin/unstable/spack.yaml
vendored
@ -3,22 +3,44 @@ spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
config:
|
||||
allow_sgid: false
|
||||
build_stage:
|
||||
- $spack/user/$user/spack-stage
|
||||
install_tree:
|
||||
root: $spack/opt/spack/unstable
|
||||
upstreams:
|
||||
spack-instance-1:
|
||||
install_tree: $spack/opt/spack/stable
|
||||
include_concrete:
|
||||
- $spack/spack-psi/env/$os/$target_family/admin/testing
|
||||
definitions:
|
||||
- gcc_12.3.0:
|
||||
- cellranger@8.0.1/6h63gx
|
||||
- fastqc@0.12.1/dkkcfu5
|
||||
- ffbidx@main/vyjua6z
|
||||
- sratoolkit@3.1.1/2szh2jy
|
||||
- star@2.7.11a/icumpki
|
||||
- opencv@4.10.0/7fjszca
|
||||
- gcc_12.3.0_openmpi:
|
||||
- cp2k@2024.1/2bayb45 # ~cuda
|
||||
- cp2k@2024.1/exkrpix # +cuda
|
||||
- quantum-espresso@7.3.1/yuxkoz2 # hdf5=parallel
|
||||
- py-alphafold@2.3.2/rrfdppp # ~cuda
|
||||
- py-alphafold@2.3.2/tqziprv # +cuda
|
||||
- oneapi_2024.1.0_openmpi:
|
||||
- gromacs@2024.1/pi5t2pp # ~cuda
|
||||
include:
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/compilers.yaml
|
||||
- $spack/../spack-psi/env/rhel7/$target_family/sysconfigs/packages.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel8/x86_64/admin/unstable
|
||||
mirrors:
|
||||
local_stable: file:///afs/psi.ch/software/spack/stable
|
||||
local_unstable: file:///afs/psi.ch/software/spack/unstable
|
||||
local_testing: file:///afs/psi.ch/software/spack/testing
|
||||
specs: []
|
||||
local_psi: file:///afs/psi.ch/software/spack/testing
|
||||
modules:
|
||||
default:
|
||||
roots:
|
||||
lmod: $spack/opt/spack/unstable/modulefiles
|
||||
specs:
|
||||
- matrix:
|
||||
- [$gcc_12.3.0]
|
||||
- ['%gcc@12.3.0']
|
||||
- matrix:
|
||||
- [$gcc_12.3.0_openmpi]
|
||||
- [^openmpi%gcc]
|
||||
- ['%gcc@12.3.0']
|
||||
- matrix:
|
||||
- [$oneapi_2024.1.0_openmpi]
|
||||
- [^openmpi%oneapi]
|
||||
- ['%oneapi@2024.1.0']
|
||||
view: false
|
||||
|
26
env/rhel7/x86_64/sysconfigs/compilers.yaml
vendored
26
env/rhel7/x86_64/sysconfigs/compilers.yaml
vendored
@ -12,3 +12,29 @@ compilers:
|
||||
fc: /usr/bin/gfortran
|
||||
spec: gcc@4.8.5
|
||||
target: x86_64
|
||||
- compiler:
|
||||
spec: gcc@=12.3.0
|
||||
paths:
|
||||
cc: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-rhel7-x86_64/gcc-4.8.5/gcc-12.3.0-zpn75bqd4uuxamtoonk5tkiproitfqpt/bin/gcc
|
||||
cxx: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-rhel7-x86_64/gcc-4.8.5/gcc-12.3.0-zpn75bqd4uuxamtoonk5tkiproitfqpt/bin/g++
|
||||
f77: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-rhel7-x86_64/gcc-4.8.5/gcc-12.3.0-zpn75bqd4uuxamtoonk5tkiproitfqpt/bin/gfortran
|
||||
fc: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-rhel7-x86_64/gcc-4.8.5/gcc-12.3.0-zpn75bqd4uuxamtoonk5tkiproitfqpt/bin/gfortran
|
||||
flags: {}
|
||||
operating_system: rhel7
|
||||
target: x86_64
|
||||
modules: []
|
||||
environment: {}
|
||||
extra_rpaths: []
|
||||
- compiler:
|
||||
spec: oneapi@=2024.1.0
|
||||
paths:
|
||||
cc: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-rhel7-x86_64/gcc-4.8.5/intel-oneapi-compilers-2024.1.0-4xhusak77uwpnggnimldlea4qydtzxy7/compiler/2024.1/bin/icx
|
||||
cxx: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-rhel7-x86_64/gcc-4.8.5/intel-oneapi-compilers-2024.1.0-4xhusak77uwpnggnimldlea4qydtzxy7/compiler/2024.1/bin/icpx
|
||||
f77: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-rhel7-x86_64/gcc-4.8.5/intel-oneapi-compilers-2024.1.0-4xhusak77uwpnggnimldlea4qydtzxy7/compiler/2024.1/bin/ifx
|
||||
fc: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-rhel7-x86_64/gcc-4.8.5/intel-oneapi-compilers-2024.1.0-4xhusak77uwpnggnimldlea4qydtzxy7/compiler/2024.1/bin/ifx
|
||||
flags: {}
|
||||
operating_system: rhel7
|
||||
target: x86_64
|
||||
modules: []
|
||||
environment: {}
|
||||
extra_rpaths: []
|
||||
|
72
env/rhel7/x86_64/sysconfigs/packages.yaml
vendored
72
env/rhel7/x86_64/sysconfigs/packages.yaml
vendored
@ -1,12 +1,19 @@
|
||||
---
|
||||
packages:
|
||||
all:
|
||||
compiler: [gcc@4.8.5, nvhpc]
|
||||
compiler: [gcc@=12.3.0, gcc@4.8.5, oneapi, nvhpc]
|
||||
prefer:
|
||||
- spec: '^openmpi'
|
||||
providers:
|
||||
blas: [openblas, nvhpc]
|
||||
lapack: [openblas, nvhpc]
|
||||
mpi: [openmpi]
|
||||
blas: [openblas, intel-oneapi-mkl, nvhpc]
|
||||
lapack: [openblas, intel-oneapi-mkl, nvhpc]
|
||||
mpi: [openmpi, mpich, intel-oneapi-mpi]
|
||||
pkgconfig: [pkg-config]
|
||||
require:
|
||||
- spec: 'target=sandybridge'
|
||||
when: "%nvhpc"
|
||||
message: "nvhpc compilers cannot target generic x86_64 microarchitecture."
|
||||
- spec: "os=rhel7"
|
||||
target: [x86_64]
|
||||
# Default GPU arch
|
||||
variants:
|
||||
@ -31,10 +38,15 @@ packages:
|
||||
require: '%gcc'
|
||||
coreutils:
|
||||
require: '%gcc@4.8.5'
|
||||
cp2k:
|
||||
require: 'build_system=makefile'
|
||||
cpio:
|
||||
require: '%gcc'
|
||||
ctffind:
|
||||
require: '%gcc'
|
||||
# Makes sure the binary works on any sytem (incl. Gwendolen)
|
||||
cuda:
|
||||
require: '@12.2:'
|
||||
curl:
|
||||
require: '%gcc@4.8.5'
|
||||
cvs:
|
||||
@ -42,7 +54,7 @@ packages:
|
||||
diffutils:
|
||||
require: '%gcc@4.8.5'
|
||||
doxygen:
|
||||
require: '%gcc@4.8.5'
|
||||
require: '%gcc'
|
||||
expat:
|
||||
require: '%gcc@4.8.5'
|
||||
file:
|
||||
@ -52,31 +64,40 @@ packages:
|
||||
flex:
|
||||
require: '%gcc@4.8.5'
|
||||
fltk:
|
||||
require: '%gcc@4.8.5'
|
||||
require: '%gcc'
|
||||
fontconfig:
|
||||
require: '%gcc@4.8.5'
|
||||
gams:
|
||||
require: '%gcc'
|
||||
freetype:
|
||||
require: '%gcc@4.8.5'
|
||||
gawk:
|
||||
require: '%gcc@4.8.5'
|
||||
gcc:
|
||||
require: '%gcc@4.8.5'
|
||||
gdbm:
|
||||
require: '%gcc@4.8.5'
|
||||
gettext:
|
||||
require: '%gcc@4.8.5'
|
||||
buildable: false
|
||||
externals:
|
||||
- prefix: /usr
|
||||
spec: gettext@0.19.8.1
|
||||
ghostscript:
|
||||
require: '%gcc@4.8.5'
|
||||
git:
|
||||
require: '%gcc@4.8.5'
|
||||
glew:
|
||||
require: '%gcc@4.8.5'
|
||||
require: '%gcc'
|
||||
gmake:
|
||||
require: '%gcc@4.8.5'
|
||||
groff:
|
||||
require: '%gcc@4.8.5'
|
||||
harfbuzz:
|
||||
require: '%gcc@4.8.5'
|
||||
require: '%gcc'
|
||||
hcoll:
|
||||
require: '%gcc@4.8.5'
|
||||
icu4c:
|
||||
require: '@67.1%gcc@12.3.0'
|
||||
intel-oneapi-compilers:
|
||||
require: '%gcc@4.8.5'
|
||||
libbsd:
|
||||
require: '%gcc@4.8.5'
|
||||
libcroco:
|
||||
@ -106,25 +127,27 @@ packages:
|
||||
libreadline:
|
||||
require: '%gcc@4.8.5'
|
||||
librsvg:
|
||||
require: '%gcc@4.8.5'
|
||||
require: '%gcc'
|
||||
libsigsegv:
|
||||
require: '%gcc@4.8.5'
|
||||
libtiff:
|
||||
require: '%gcc@4.8.5'
|
||||
require: '%gcc'
|
||||
libtool:
|
||||
require: '%gcc@4.8.5'
|
||||
libx11:
|
||||
require: '%gcc@4.8.5'
|
||||
libxcb:
|
||||
require: '%gcc@4.8.5'
|
||||
libxext:
|
||||
require: '%gcc@4.8.5'
|
||||
libxft:
|
||||
require: '%gcc@4.8.5'
|
||||
require: '%gcc'
|
||||
libxml2:
|
||||
require: '%gcc@4.8.5'
|
||||
libxpm:
|
||||
require: '%gcc@4.8.5'
|
||||
require: '%gcc'
|
||||
libxt:
|
||||
require: '%gcc@4.8.5'
|
||||
require: '%gcc'
|
||||
m4:
|
||||
require: '%gcc@4.8.5'
|
||||
ncurses:
|
||||
@ -135,11 +158,20 @@ packages:
|
||||
require: '%gcc@4.8.5'
|
||||
numactl:
|
||||
require: '%gcc@4.8.5'
|
||||
nvhpc:
|
||||
require: '%gcc@4.8.5 install_type=network'
|
||||
openblas:
|
||||
require: '%gcc'
|
||||
opengl:
|
||||
buildable: False
|
||||
externals:
|
||||
- spec: opengl@1.7.0
|
||||
prefix: /usr
|
||||
openmpi:
|
||||
require:
|
||||
- schedulers=slurm fabrics=auto +pmi +cxx +cxx_exceptions +cuda +legacylaunchers
|
||||
- spec: schedulers=slurm fabrics=auto +internal-pmix +cxx +cuda +legacylaunchers
|
||||
- spec: '+cxx_exceptions'
|
||||
when: '%gcc'
|
||||
openssh:
|
||||
require: '%gcc@4.8.5'
|
||||
openssl:
|
||||
@ -150,10 +182,10 @@ packages:
|
||||
require: '%gcc@4.8.5'
|
||||
pkg-config:
|
||||
require: '%gcc@4.8.5'
|
||||
py-fypp:
|
||||
require: '%gcc@4.8.5'
|
||||
py-numpy:
|
||||
require: '%gcc@12.3.0'
|
||||
python:
|
||||
require: '%gcc@4.8.5'
|
||||
require: '%gcc'
|
||||
readline:
|
||||
require: '%gcc@4.8.5'
|
||||
rsync:
|
||||
|
25
env/rhel7/x86_64/users/stable/spack.yaml
vendored
25
env/rhel7/x86_64/users/stable/spack.yaml
vendored
@ -1,17 +1,16 @@
|
||||
spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
config:
|
||||
allow_sgid: false
|
||||
build_stage:
|
||||
- $spack/user/$user/spack-stage
|
||||
install_tree:
|
||||
root: $spack/user/$user/spack-install
|
||||
upstreams:
|
||||
spack-instance-1:
|
||||
install_tree: $spack/opt/spack/stable
|
||||
include:
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/compilers.yaml
|
||||
specs:
|
||||
include:
|
||||
- $spack/../spack-psi/env/rhel7/x86_64/sysconfigs/packages.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel7/x86_64/admin/stable
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel8/x86_64/admin/stable
|
||||
specs: []
|
||||
upstreams:
|
||||
stable:
|
||||
install_tree: >-
|
||||
$spack/opt/spack/stable
|
||||
repos:
|
||||
- $spack/../user/$user/spack-repo
|
||||
view: false
|
||||
|
30
env/rhel7/x86_64/users/unstable/spack.yaml
vendored
30
env/rhel7/x86_64/users/unstable/spack.yaml
vendored
@ -1,19 +1,19 @@
|
||||
spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
config:
|
||||
allow_sgid: false
|
||||
build_stage:
|
||||
- $spack/user/$user/spack-stage
|
||||
install_tree:
|
||||
root: $spack/user/$user/spack-install
|
||||
upstreams:
|
||||
spack-instance-1:
|
||||
install_tree: $spack/opt/spack/stable
|
||||
spack-instance-2:
|
||||
install_tree: $spack/opt/spack/unstable
|
||||
include:
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/compilers.yaml
|
||||
specs:
|
||||
include:
|
||||
- $spack/../spack-psi/env/rhel7/x86_64/sysconfigs/packages.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel7/x86_64/admin/stable
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel8/x86_64/admin/stable
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel7/x86_64/admin/unstable
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel8/x86_64/admin/unstable
|
||||
specs: []
|
||||
upstreams:
|
||||
stable:
|
||||
install_tree: $spack/opt/spack/stable
|
||||
unstable:
|
||||
install_tree: $spack/opt/spack/unstable
|
||||
repos:
|
||||
- $spack/../user/$user/spack-repo
|
||||
view: false
|
||||
|
1
env/rhel8/x86_64/admin/stable/spack.lock
vendored
Normal file
1
env/rhel8/x86_64/admin/stable/spack.lock
vendored
Normal file
File diff suppressed because one or more lines are too long
36
env/rhel8/x86_64/admin/stable/spack.yaml
vendored
Normal file
36
env/rhel8/x86_64/admin/stable/spack.yaml
vendored
Normal file
@ -0,0 +1,36 @@
|
||||
spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
config:
|
||||
install_tree:
|
||||
root: $spack/opt/spack/stable
|
||||
definitions:
|
||||
- compilers:
|
||||
- gcc@=12.3.0
|
||||
- intel-oneapi-compilers@=2024.1.0
|
||||
- gcc_4.8.5:
|
||||
- fpart@1.6.0/lcygtky
|
||||
- gcc_12.3.0_openmpi:
|
||||
- opal@master/l4dkgyf
|
||||
include:
|
||||
- $spack/../spack-psi/env/rhel8/$target_family/sysconfigs/packages.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel7/x86_64/admin/stable
|
||||
mirrors:
|
||||
local_psi: file:///afs/psi.ch/software/spack/testing
|
||||
modules:
|
||||
default:
|
||||
roots:
|
||||
tcl: $spack/opt/spack/stable/modulefiles
|
||||
specs:
|
||||
- matrix:
|
||||
- [$compilers]
|
||||
- ['%gcc@4.8.5']
|
||||
- matrix:
|
||||
- [$gcc_4.8.5]
|
||||
- ['%gcc@4.8.5']
|
||||
- matrix:
|
||||
- [$gcc_12.3.0_openmpi]
|
||||
- [^openmpi%gcc]
|
||||
- ['%gcc@12.3.0']
|
||||
view: false
|
21
env/rhel8/x86_64/admin/testing/spack.yaml
vendored
Normal file
21
env/rhel8/x86_64/admin/testing/spack.yaml
vendored
Normal file
@ -0,0 +1,21 @@
|
||||
---
|
||||
spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
config:
|
||||
install_tree:
|
||||
root: $spack/opt/spack/testing
|
||||
# Strongly adviced to avoid problems with buildcaches
|
||||
padded_length: 256
|
||||
include:
|
||||
- $spack/../spack-psi/env/rhel8/$target_family/sysconfigs/packages.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel7/x86_64/admin/testing
|
||||
mirrors:
|
||||
local_psi: file:///afs/psi.ch/software/spack/testing
|
||||
modules:
|
||||
default:
|
||||
roots:
|
||||
tcl: $spack/opt/spack/testing/modulefiles
|
||||
specs: []
|
||||
view: false
|
1
env/rhel8/x86_64/admin/unstable/spack.lock
vendored
Normal file
1
env/rhel8/x86_64/admin/unstable/spack.lock
vendored
Normal file
File diff suppressed because one or more lines are too long
45
env/rhel8/x86_64/admin/unstable/spack.yaml
vendored
Normal file
45
env/rhel8/x86_64/admin/unstable/spack.yaml
vendored
Normal file
@ -0,0 +1,45 @@
|
||||
---
|
||||
spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
config:
|
||||
install_tree:
|
||||
root: $spack/opt/spack/unstable
|
||||
definitions:
|
||||
- gcc_12.3.0:
|
||||
- cellranger@8.0.1/6h63gx
|
||||
- fastqc@0.12.1/dkkcfu5
|
||||
- ffbidx@main/vyjua6z
|
||||
- sratoolkit@3.1.1/2szh2jy
|
||||
- star@2.7.11a/icumpki
|
||||
- gcc_12.3.0_openmpi:
|
||||
- cp2k@2024.1/2bayb45 # ~cuda
|
||||
- cp2k@2024.1/exkrpix # +cuda
|
||||
- quantum-espresso@7.3.1/yuxkoz2 # hdf5=parallel
|
||||
- py-alphafold@2.3.2/rrfdppp # ~cuda
|
||||
- py-alphafold@2.3.2/tqziprv # +cuda
|
||||
- oneapi_2024.1.0_openmpi:
|
||||
- gromacs@2024.1/pi5t2pp # ~cuda
|
||||
include:
|
||||
- $spack/../spack-psi/env/rhel8/$target_family/sysconfigs/packages.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel7/x86_64/admin/unstable
|
||||
mirrors:
|
||||
local_psi: file:///afs/psi.ch/software/spack/testing
|
||||
modules:
|
||||
default:
|
||||
roots:
|
||||
tcl: $spack/opt/spack/unstable/modulefiles
|
||||
specs:
|
||||
- matrix:
|
||||
- [$gcc_12.3.0]
|
||||
- ['%gcc@12.3.0']
|
||||
- matrix:
|
||||
- [$gcc_12.3.0_openmpi]
|
||||
- [^openmpi%gcc]
|
||||
- ['%gcc@12.3.0']
|
||||
- matrix:
|
||||
- [$oneapi_2024.1.0_openmpi]
|
||||
- [^openmpi%oneapi]
|
||||
- ['%oneapi@2024.1.0']
|
||||
view: false
|
14
env/rhel8/x86_64/sysconfigs/compilers.yaml
vendored
Normal file
14
env/rhel8/x86_64/sysconfigs/compilers.yaml
vendored
Normal file
@ -0,0 +1,14 @@
|
||||
compilers:
|
||||
- compiler:
|
||||
environment: {}
|
||||
extra_rpaths: []
|
||||
flags: {}
|
||||
modules: []
|
||||
operating_system: rhel8
|
||||
paths:
|
||||
cc: /usr/bin/gcc
|
||||
cxx: /usr/bin/g++
|
||||
f77: /usr/bin/gfortran
|
||||
fc: /usr/bin/gfortran
|
||||
spec: gcc@8.5.0
|
||||
target: x86_64
|
224
env/rhel8/x86_64/sysconfigs/packages.yaml
vendored
Normal file
224
env/rhel8/x86_64/sysconfigs/packages.yaml
vendored
Normal file
@ -0,0 +1,224 @@
|
||||
---
|
||||
packages:
|
||||
all:
|
||||
compiler: [gcc@8.5.0, oneapi, nvhpc]
|
||||
prefer:
|
||||
- spec: '^openmpi'
|
||||
providers:
|
||||
blas: [openblas, intel-oneapi-mkl, nvhpc]
|
||||
lapack: [openblas, intel-oneapi-mkl, nvhpc]
|
||||
mpi: [openmpi, mpich, intel-oneapi-mpi]
|
||||
pkgconfig: [pkg-config]
|
||||
require:
|
||||
- spec: 'target=skylake_avx512'
|
||||
when: "%nvhpc"
|
||||
message: "nvhpc compilers cannot target generic x86_64 microarchitecture."
|
||||
- spec: "os=rhel8"
|
||||
target: [x86_64]
|
||||
# Default GPU arch
|
||||
variants:
|
||||
- cuda_arch=60
|
||||
autoconf:
|
||||
require: '%gcc@8.5.0'
|
||||
automake:
|
||||
require: '%gcc@8.5.0'
|
||||
berkeley-db:
|
||||
require: '%gcc@8.5.0'
|
||||
binutils:
|
||||
require: '%gcc@8.5.0'
|
||||
boost:
|
||||
require: '%gcc'
|
||||
bzip2:
|
||||
require: '%gcc@8.5.0'
|
||||
ca-certificates-mozilla:
|
||||
require: '%gcc@8.5.0'
|
||||
cairo:
|
||||
require: '%gcc@8.5.0'
|
||||
cmake:
|
||||
require: '%gcc'
|
||||
coreutils:
|
||||
require: '%gcc@8.5.0'
|
||||
cp2k:
|
||||
require: 'build_system=makefile'
|
||||
cpio:
|
||||
require: '%gcc'
|
||||
ctffind:
|
||||
require: '%gcc'
|
||||
# Makes sure the binary works on any sytem (incl. Gwendolen)
|
||||
cuda:
|
||||
require: '@12.2:'
|
||||
curl:
|
||||
require: '%gcc@8.5.0'
|
||||
cvs:
|
||||
require: '%gcc@8.5.0'
|
||||
diffutils:
|
||||
require: '%gcc@8.5.0'
|
||||
doxygen:
|
||||
require: '%gcc'
|
||||
expat:
|
||||
require: '%gcc@8.5.0'
|
||||
file:
|
||||
require: '%gcc@8.5.0'
|
||||
findutils:
|
||||
require: '%gcc@8.5.0'
|
||||
flex:
|
||||
require: '%gcc@8.5.0'
|
||||
fltk:
|
||||
require: '%gcc'
|
||||
fontconfig:
|
||||
require: '%gcc'
|
||||
freetype:
|
||||
require: '%gcc@8.5.0'
|
||||
gams:
|
||||
require: '%gcc@8.5.0'
|
||||
gawk:
|
||||
require: '%gcc@8.5.0'
|
||||
gcc:
|
||||
require: '%gcc@8.5.0'
|
||||
gdbm:
|
||||
require: '%gcc@8.5.0'
|
||||
gettext:
|
||||
buildable: false
|
||||
externals:
|
||||
- prefix: /usr
|
||||
spec: gettext@0.19.8.1
|
||||
ghostscript:
|
||||
require: '%gcc@8.5.0'
|
||||
git:
|
||||
require: '%gcc@8.5.0'
|
||||
glew:
|
||||
require: '%gcc'
|
||||
gmake:
|
||||
require: '%gcc@8.5.0'
|
||||
groff:
|
||||
require: '%gcc@8.5.0'
|
||||
harfbuzz:
|
||||
require: '%gcc'
|
||||
hcoll:
|
||||
require: '%gcc@8.5.0'
|
||||
icu4c:
|
||||
require: '@67.1%gcc@12.3.0'
|
||||
intel-oneapi-compilers:
|
||||
require: '%gcc@8.5.0'
|
||||
libbsd:
|
||||
require: '%gcc@8.5.0'
|
||||
libcroco:
|
||||
require: '%gcc@8.5.0'
|
||||
libepoxy:
|
||||
require: '%gcc@8.5.0'
|
||||
libevent:
|
||||
require: '%gcc@8.5.0'
|
||||
libfuse:
|
||||
require: '%gcc@8.5.0'
|
||||
libice:
|
||||
require: '%gcc@8.5.0'
|
||||
libiconv:
|
||||
require: '%gcc@8.5.0'
|
||||
libidn2:
|
||||
require: '%gcc@8.5.0'
|
||||
libjpeg-turbo:
|
||||
require: '%gcc@8.5.0'
|
||||
libmd:
|
||||
require: '%gcc@8.5.0'
|
||||
libpciaccess:
|
||||
require: '%gcc@8.5.0'
|
||||
libpthread:
|
||||
require: '%gcc@8.5.0'
|
||||
libpthread-stubs:
|
||||
require: '%gcc@8.5.0'
|
||||
libreadline:
|
||||
require: '%gcc@8.5.0'
|
||||
librsvg:
|
||||
require: '%gcc'
|
||||
libsigsegv:
|
||||
require: '%gcc@8.5.0'
|
||||
libtiff:
|
||||
require: '%gcc'
|
||||
libtool:
|
||||
require: '%gcc@8.5.0'
|
||||
libx11:
|
||||
require: '%gcc@8.5.0'
|
||||
libxcb:
|
||||
require: '%gcc@8.5.0'
|
||||
libxext:
|
||||
require: '%gcc@8.5.0'
|
||||
libxft:
|
||||
require: '%gcc'
|
||||
libxml2:
|
||||
require: '%gcc@8.5.0'
|
||||
libxpm:
|
||||
require: '%gcc@8.5.0'
|
||||
libxt:
|
||||
require: '%gcc'
|
||||
m4:
|
||||
require: '%gcc@8.5.0'
|
||||
ncurses:
|
||||
require: '%gcc@8.5.0'
|
||||
ninja:
|
||||
require: '%gcc@8.5.0'
|
||||
nlohmann-json:
|
||||
require: '%gcc@8.5.0'
|
||||
numactl:
|
||||
require: '%gcc@8.5.0'
|
||||
nvhpc:
|
||||
require: '%gcc@8.5.0 install_type=network'
|
||||
openblas:
|
||||
require: '%gcc'
|
||||
openmpi:
|
||||
require:
|
||||
- spec: schedulers=slurm fabrics=auto pmi-interface=pmi2 +cxx +cuda +legacylaunchers
|
||||
- spec: '+cxx_exceptions'
|
||||
when: '%gcc'
|
||||
openssh:
|
||||
require: '%gcc@8.5.0'
|
||||
openssl:
|
||||
require: '%gcc@8.5.0'
|
||||
pcre2:
|
||||
require: '%gcc@8.5.0'
|
||||
perl:
|
||||
require: '%gcc@8.5.0'
|
||||
pkg-config:
|
||||
require: '%gcc@8.5.0'
|
||||
py-numpy:
|
||||
require: '%gcc@12.3.0'
|
||||
python:
|
||||
require: '%gcc'
|
||||
readline:
|
||||
require: '%gcc@8.5.0'
|
||||
rsync:
|
||||
require: '%gcc@8.5.0'
|
||||
ruby:
|
||||
require: '%gcc@8.5.0'
|
||||
sed:
|
||||
require: '%gcc@8.5.0'
|
||||
slurm:
|
||||
buildable: false
|
||||
externals:
|
||||
- prefix: /usr
|
||||
spec: slurm@24-05-2-1 +pmix +hwloc +hdf5 +mariadb +pam
|
||||
sqlite:
|
||||
require: '%gcc@8.5.0'
|
||||
subversion:
|
||||
require: '%gcc@8.5.0'
|
||||
tar:
|
||||
require: '%gcc@8.5.0'
|
||||
texinfo:
|
||||
require: '%gcc@8.5.0'
|
||||
unuran:
|
||||
require: '%gcc@8.5.0'
|
||||
util-linux-uuid:
|
||||
require: '%gcc@8.5.0'
|
||||
util-macros:
|
||||
require: '%gcc@8.5.0'
|
||||
valgrind:
|
||||
require: '%gcc@8.5.0'
|
||||
xerces-c:
|
||||
require: '%gcc@8.5.0'
|
||||
xxhash:
|
||||
require: '%gcc@8.5.0'
|
||||
xz:
|
||||
require: '%gcc@8.5.0'
|
||||
zlib:
|
||||
require: '%gcc@8.5.0'
|
||||
zstd:
|
||||
require: '%gcc@8.5.0'
|
16
env/rhel8/x86_64/users/stable/spack.yaml
vendored
Normal file
16
env/rhel8/x86_64/users/stable/spack.yaml
vendored
Normal file
@ -0,0 +1,16 @@
|
||||
spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
include:
|
||||
- $spack/../spack-psi/env/rhel8/x86_64/sysconfigs/packages.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel8/x86_64/admin/stable
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel7/x86_64/admin/stable
|
||||
specs: []
|
||||
upstreams:
|
||||
stable:
|
||||
install_tree: >-
|
||||
$spack/opt/spack/stable
|
||||
repos:
|
||||
- $spack/../user/$user/spack-repo
|
||||
view: false
|
19
env/rhel8/x86_64/users/unstable/spack.yaml
vendored
Normal file
19
env/rhel8/x86_64/users/unstable/spack.yaml
vendored
Normal file
@ -0,0 +1,19 @@
|
||||
spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
include:
|
||||
- $spack/../spack-psi/env/rhel8/x86_64/sysconfigs/packages.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel8/x86_64/admin/stable
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel8/x86_64/admin/unstable
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel7/x86_64/admin/stable
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/rhel7/x86_64/admin/unstable
|
||||
specs: []
|
||||
upstreams:
|
||||
stable:
|
||||
install_tree: $spack/opt/spack/stable
|
||||
unstable:
|
||||
install_tree: $spack/opt/spack/unstable
|
||||
repos:
|
||||
- $spack/../user/$user/spack-repo
|
||||
view: false
|
1
env/sles15/aarch64/admin/stable/spack.lock
vendored
Normal file
1
env/sles15/aarch64/admin/stable/spack.lock
vendored
Normal file
File diff suppressed because one or more lines are too long
45
env/sles15/aarch64/admin/stable/spack.yaml
vendored
Normal file
45
env/sles15/aarch64/admin/stable/spack.yaml
vendored
Normal file
@ -0,0 +1,45 @@
|
||||
---
|
||||
spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
config:
|
||||
install_tree:
|
||||
root: $spack/opt/spack/stable
|
||||
definitions:
|
||||
- compilers:
|
||||
- gcc@13.2.0
|
||||
- gcc@7.5.0
|
||||
- gcc@=12.3
|
||||
- nvhpc@24.3
|
||||
- cce@17.0.0
|
||||
include:
|
||||
- $spack/../spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
mirrors:
|
||||
local_psi: file:///afs/psi.ch/software/spack/testing
|
||||
modules:
|
||||
default:
|
||||
roots:
|
||||
lmod: $spack/opt/spack/stable/modulefiles
|
||||
lmod:
|
||||
cray-mpich:
|
||||
environment:
|
||||
set:
|
||||
SLURM_MPI_TYPE: pmix
|
||||
openmpi:
|
||||
environment:
|
||||
set:
|
||||
SLURM_MPI_TYPE: pmix
|
||||
OMPI_MCA_mtl_ofi_disable_hmem: 'true'
|
||||
openmpi@main:
|
||||
environment:
|
||||
set:
|
||||
SLURM_MPI_TYPE: pmix
|
||||
FI_HMEM_CUDA_USE_DMABUF: '1'
|
||||
OMPI_MCA_coll: '^han'
|
||||
core_compilers:
|
||||
- gcc@=7.5.0
|
||||
specs:
|
||||
- matrix:
|
||||
- [$compilers]
|
||||
- ['%gcc@7.5.0']
|
||||
view: false
|
62
env/sles15/aarch64/admin/testing/spack.yaml
vendored
Normal file
62
env/sles15/aarch64/admin/testing/spack.yaml
vendored
Normal file
@ -0,0 +1,62 @@
|
||||
spack:
|
||||
concretizer:
|
||||
unify: when_possible
|
||||
targets:
|
||||
granularity: microarchitectures
|
||||
reuse:
|
||||
from:
|
||||
- type: local
|
||||
- type: external
|
||||
config:
|
||||
install_tree:
|
||||
root: $spack/opt/spack/testing
|
||||
# Strongly adviced to avoid problems with buildcaches
|
||||
padded_length: 256
|
||||
include:
|
||||
- $spack/../spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
mirrors:
|
||||
local_psi: file:///afs/psi.ch/software/spack/testing
|
||||
modules:
|
||||
default:
|
||||
roots:
|
||||
lmod: $spack/opt/spack/testing/modulefiles
|
||||
lmod:
|
||||
cray-mpich:
|
||||
environment:
|
||||
set:
|
||||
SLURM_MPI_TYPE: pmix
|
||||
openmpi:
|
||||
environment:
|
||||
set:
|
||||
SLURM_MPI_TYPE: pmix
|
||||
OMPI_MCA_mtl_ofi_disable_hmem: 'true'
|
||||
openmpi@main:
|
||||
environment:
|
||||
set:
|
||||
SLURM_MPI_TYPE: pmix
|
||||
FI_HMEM_CUDA_USE_DMABUF: '1'
|
||||
OMPI_MCA_coll: '^han'
|
||||
packages:
|
||||
# overwrite any existing compiler
|
||||
'cce:':
|
||||
buildable: true
|
||||
'gcc:':
|
||||
buildable: true
|
||||
'nvhpc:':
|
||||
buildable: true
|
||||
specs: []
|
||||
view: false
|
||||
compilers:
|
||||
- compiler:
|
||||
spec: gcc@=7.5.0
|
||||
paths:
|
||||
cc: /usr/bin/gcc
|
||||
cxx: /usr/bin/g++
|
||||
f77: /usr/bin/gfortran
|
||||
fc: /usr/bin/gfortran
|
||||
flags: {}
|
||||
operating_system: sles15
|
||||
target: aarch64
|
||||
modules: []
|
||||
environment: {}
|
||||
extra_rpaths: []
|
1
env/sles15/aarch64/admin/unstable/spack.lock
vendored
Normal file
1
env/sles15/aarch64/admin/unstable/spack.lock
vendored
Normal file
File diff suppressed because one or more lines are too long
141
env/sles15/aarch64/admin/unstable/spack.yaml
vendored
Normal file
141
env/sles15/aarch64/admin/unstable/spack.yaml
vendored
Normal file
@ -0,0 +1,141 @@
|
||||
spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
config:
|
||||
install_tree:
|
||||
root: $spack/opt/spack/unstable
|
||||
definitions:
|
||||
- compilers_gcc_7.5.0:
|
||||
- gcc@13.2.0
|
||||
- gcc@7.5.0
|
||||
- gcc@=12.3
|
||||
- gcc@14.2.0/tln2ck4
|
||||
- nvhpc@24.3
|
||||
- cce@17.0.0
|
||||
- compilers_gcc_13.2.0:
|
||||
- nvhpc@24.11/6wi4jhx
|
||||
- gcc_7.5.0:
|
||||
- ffbidx@main/3xig2i
|
||||
- gcc_13.2.0:
|
||||
- dssp@2.3.0/xfc2pth
|
||||
- gcc_14.2.0:
|
||||
- osu-micro-benchmarks@7.5/mit3iil
|
||||
- osu-micro-benchmarks@7.5/6ycu464
|
||||
- aws-ofi-nccl@1.13.0/nz3b3yk
|
||||
- gcc_12.3_openmpi:
|
||||
- gromacs@2024.1/x33hfjx
|
||||
- cp2k@2024.3/m3eow6e #+cuda
|
||||
- relion@4.0.1/rudfcxt
|
||||
- relion@5.0.0/oyf4n7i
|
||||
- gcc_12.3_cray_mpich:
|
||||
- relion@5.0.0/wk4d62r
|
||||
- gcc_13.2_openmpi:
|
||||
- opal-x@fixSolverUnits/ttg7vdz
|
||||
- gcc_14.2_openmpi:
|
||||
- py-torchvision@0.20.1/ysfcgu5
|
||||
- py-torchaudio@2.5.1/trrglyu
|
||||
- nvhpc_24.11_openmpi:
|
||||
- quantum-espresso@7.4/oed4w6w #+cuda +mpigpu hdf5=parallel
|
||||
- quantum-espresso@7.3.1/d5wpqzw
|
||||
include:
|
||||
- $spack/../spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
mirrors:
|
||||
local_psi: file:///afs/psi.ch/software/spack/testing
|
||||
modules:
|
||||
default:
|
||||
roots:
|
||||
lmod: $spack/opt/spack/unstable/modulefiles
|
||||
lmod:
|
||||
cray-mpich:
|
||||
environment:
|
||||
set:
|
||||
SLURM_MPI_TYPE: pmix
|
||||
openmpi:
|
||||
environment:
|
||||
set:
|
||||
SLURM_MPI_TYPE: pmix
|
||||
openmpi@main:
|
||||
environment:
|
||||
set:
|
||||
SLURM_MPI_TYPE: pmix
|
||||
FI_HMEM_CUDA_USE_DMABUF: '1'
|
||||
OMPI_MCA_coll: '^han'
|
||||
core_compilers:
|
||||
- gcc@=7.5.0
|
||||
specs:
|
||||
- matrix:
|
||||
- [$compilers_gcc_7.5.0]
|
||||
- ['%gcc@7.5.0']
|
||||
- matrix:
|
||||
- [$compilers_gcc_13.2.0]
|
||||
- ['%gcc@13.2.0']
|
||||
- matrix:
|
||||
- [$gcc_7.5.0]
|
||||
- ['%gcc@7.5.0']
|
||||
- matrix:
|
||||
- [$gcc_13.2.0]
|
||||
- ['%gcc@13.2.0']
|
||||
- matrix:
|
||||
- [$gcc_14.2.0]
|
||||
- ['%gcc@14.2.0']
|
||||
- matrix:
|
||||
- [$gcc_12.3_cray_mpich]
|
||||
- ['%gcc@12.3']
|
||||
- [^cray-mpich]
|
||||
- matrix:
|
||||
- [$gcc_12.3_openmpi]
|
||||
- ['%gcc@12.3']
|
||||
- [^openmpi]
|
||||
- matrix:
|
||||
- [$gcc_13.2_openmpi]
|
||||
- ['%gcc@13.2']
|
||||
- [^openmpi]
|
||||
- matrix:
|
||||
- [$gcc_14.2_openmpi]
|
||||
- ['%gcc@14.2']
|
||||
- [^openmpi]
|
||||
- matrix:
|
||||
- [$nvhpc_24.11_openmpi]
|
||||
- ['%nvhpc@24.11']
|
||||
- [^openmpi]
|
||||
view: false
|
||||
compilers:
|
||||
- compiler:
|
||||
spec: gcc@=14.2.0
|
||||
paths:
|
||||
cc: /afs/psi.ch/sys/spack/develop/opt/spack/unstable/linux-sles15-aarch64/gcc-7.5.0/gcc-14.2.0-tln2ck4lolcipi2fj2klu5dei3oac4sv/bin/gcc
|
||||
cxx: /afs/psi.ch/sys/spack/develop/opt/spack/unstable/linux-sles15-aarch64/gcc-7.5.0/gcc-14.2.0-tln2ck4lolcipi2fj2klu5dei3oac4sv/bin/g++
|
||||
f77: /afs/psi.ch/sys/spack/develop/opt/spack/unstable/linux-sles15-aarch64/gcc-7.5.0/gcc-14.2.0-tln2ck4lolcipi2fj2klu5dei3oac4sv/bin/gfortran
|
||||
fc: /afs/psi.ch/sys/spack/develop/opt/spack/unstable/linux-sles15-aarch64/gcc-7.5.0/gcc-14.2.0-tln2ck4lolcipi2fj2klu5dei3oac4sv/bin/gfortran
|
||||
flags: {}
|
||||
operating_system: sles15
|
||||
target: aarch64
|
||||
modules: []
|
||||
environment: {}
|
||||
extra_rpaths: []
|
||||
- compiler:
|
||||
spec: gcc@=7.5.0
|
||||
paths:
|
||||
cc: /usr/bin/gcc
|
||||
cxx: /usr/bin/g++
|
||||
f77: /usr/bin/gfortran
|
||||
fc: /usr/bin/gfortran
|
||||
flags: {}
|
||||
operating_system: sles15
|
||||
target: aarch64
|
||||
modules: []
|
||||
environment: {}
|
||||
extra_rpaths: []
|
||||
- compiler:
|
||||
spec: gcc@=12.3.0
|
||||
paths:
|
||||
cc: /usr/bin/gcc-12
|
||||
cxx: /usr/bin/g++-12
|
||||
f77: /usr/bin/gfortran-12
|
||||
fc: /usr/bin/gfortran-12
|
||||
flags: {}
|
||||
operating_system: sles15
|
||||
target: aarch64
|
||||
modules: []
|
||||
environment: {}
|
||||
extra_rpaths: []
|
31
env/sles15/aarch64/sysconfigs/compilers.yaml
vendored
Normal file
31
env/sles15/aarch64/sysconfigs/compilers.yaml
vendored
Normal file
@ -0,0 +1,31 @@
|
||||
compilers:
|
||||
- compiler:
|
||||
spec: gcc@=13.2.0
|
||||
paths:
|
||||
cc: /afs/psi.ch/sys/spack/system/opt/spack/stable/linux-sles15-aarch64/gcc-7.5.0/gcc-13.2.0-a3pki4ocu2ipqupkaf6ghg6hry4pkxg3/bin/gcc
|
||||
cxx: /afs/psi.ch/sys/spack/system/opt/spack/stable/linux-sles15-aarch64/gcc-7.5.0/gcc-13.2.0-a3pki4ocu2ipqupkaf6ghg6hry4pkxg3/bin/g++
|
||||
f77: /afs/psi.ch/sys/spack/system/opt/spack/stable/linux-sles15-aarch64/gcc-7.5.0/gcc-13.2.0-a3pki4ocu2ipqupkaf6ghg6hry4pkxg3/bin/gfortran
|
||||
fc: /afs/psi.ch/sys/spack/system/opt/spack/stable/linux-sles15-aarch64/gcc-7.5.0/gcc-13.2.0-a3pki4ocu2ipqupkaf6ghg6hry4pkxg3/bin/gfortran
|
||||
flags: {}
|
||||
operating_system: sles15
|
||||
target: aarch64
|
||||
modules:
|
||||
- libfabric/1.22.0
|
||||
environment: {}
|
||||
extra_rpaths: []
|
||||
- compiler:
|
||||
spec: nvhpc@=24.11
|
||||
paths:
|
||||
cc: /afs/psi.ch/sys/spack/develop/opt/spack/unstable/linux-sles15-aarch64/gcc-13.2.0/nvhpc-24.11-6wi4jhxcgbkzgrw6fgrutvten74l5ovl/Linux_aarch64/24.11/compilers/bin/nvc
|
||||
cxx: /afs/psi.ch/sys/spack/develop/opt/spack/unstable/linux-sles15-aarch64/gcc-13.2.0/nvhpc-24.11-6wi4jhxcgbkzgrw6fgrutvten74l5ovl/Linux_aarch64/24.11/compilers/bin/nvc++
|
||||
f77: /afs/psi.ch/sys/spack/develop/opt/spack/unstable/linux-sles15-aarch64/gcc-13.2.0/nvhpc-24.11-6wi4jhxcgbkzgrw6fgrutvten74l5ovl/Linux_aarch64/24.11/compilers/bin/nvfortran
|
||||
fc: /afs/psi.ch/sys/spack/develop/opt/spack/unstable/linux-sles15-aarch64/gcc-13.2.0/nvhpc-24.11-6wi4jhxcgbkzgrw6fgrutvten74l5ovl/Linux_aarch64/24.11/compilers/bin/nvfortran
|
||||
flags: {}
|
||||
operating_system: sles15
|
||||
target: aarch64
|
||||
modules:
|
||||
- libfabric/1.22.0
|
||||
- /afs/psi.ch/sys/spack/develop/opt/spack/unstable/linux-sles15-aarch64/gcc-13.2.0/nvhpc-24.11-6wi4jhxcgbkzgrw6fgrutvten74l5ovl/modulefiles/nvhpc-nompi/24.11
|
||||
environment: {}
|
||||
extra_rpaths:
|
||||
- /afs/psi.ch/sys/spack/develop/opt/spack/unstable/linux-sles15-aarch64/gcc-13.2.0/nvhpc-24.11-6wi4jhxcgbkzgrw6fgrutvten74l5ovl/Linux_aarch64/24.11/math_libs/lib64/stubs
|
346
env/sles15/aarch64/sysconfigs/packages.yaml
vendored
Normal file
346
env/sles15/aarch64/sysconfigs/packages.yaml
vendored
Normal file
@ -0,0 +1,346 @@
|
||||
packages:
|
||||
all:
|
||||
compiler: [gcc, nvhpc, cce]
|
||||
prefer:
|
||||
- spec: '^openmpi'
|
||||
when: '^mpi'
|
||||
- spec: '^openblas'
|
||||
when: '%gcc ^blas'
|
||||
- spec: '^netlib-scalapack'
|
||||
when: '+scalapack'
|
||||
providers:
|
||||
blas: [openblas, nvhpc, nvpl-blas]
|
||||
lapack: [openblas, nvhpc, nvpl-lapack]
|
||||
mpi: [openmpi, cray-mpich]
|
||||
pkgconfig: [pkg-config]
|
||||
scalapack: [netlib-scalapack]
|
||||
require:
|
||||
- spec: "os=sles15"
|
||||
- spec: "target=aarch64"
|
||||
when: "%gcc"
|
||||
- spec: "target=neoverse_v2"
|
||||
when: "%nvhpc"
|
||||
# Grace Hopper arch
|
||||
variants:
|
||||
- cuda_arch=90
|
||||
berkeley-db:
|
||||
require: '%gcc@7.5.0'
|
||||
boost:
|
||||
require: '%gcc'
|
||||
cassini-headers:
|
||||
require: '@main'
|
||||
ca-certificates-mozilla:
|
||||
require: '%gcc@7.5.0'
|
||||
cce:
|
||||
externals:
|
||||
- modules:
|
||||
- libfabric/1.22.0
|
||||
- PrgEnv-cray/8.5.0
|
||||
- cce/17.0.0
|
||||
spec: cce@=17.0.0
|
||||
extra_attributes:
|
||||
compilers:
|
||||
c: cc
|
||||
cxx: CC
|
||||
fortran: ftn
|
||||
operating_system: sles15
|
||||
target: aarch64
|
||||
cmake:
|
||||
require: '%gcc@7.5.0'
|
||||
coreutils:
|
||||
require: '%gcc@7.5.0'
|
||||
cray-libsci:
|
||||
buildable: false
|
||||
externals:
|
||||
- modules:
|
||||
- cray-libsci
|
||||
prefix: /opt/cray/pe/libsci/23.12.5/cray/17.0/aarch64
|
||||
spec: cray-libsci@23.12.5%cce@17.0.0 +mpi +openmp
|
||||
- modules:
|
||||
- cray-libsci
|
||||
prefix: /opt/cray/pe/libsci/23.12.5/GNU/12.3/aarch64/
|
||||
spec: cray-libsci@23.12.5%gcc@12.3 +mpi +openmp
|
||||
cray-mpich:
|
||||
buildable: false
|
||||
externals:
|
||||
- modules:
|
||||
- PrgEnv-cce
|
||||
- cray-mpich
|
||||
prefix: /opt/cray/pe/mpich/8.1.28/ofi/cray/17.0
|
||||
spec: cray-mpich@8.1.28%cce@17.0.0
|
||||
- modules:
|
||||
- PrgEnv-gnu
|
||||
- cray-mpich
|
||||
prefix: /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3
|
||||
spec: cray-mpich@8.1.28%gcc@12.3
|
||||
cray-pmi:
|
||||
buildable: false
|
||||
externals:
|
||||
- modules:
|
||||
- cray-pmi
|
||||
prefix: /opt/cray/pe/pmi/6.1.13
|
||||
spec: cray-pmi@6.1.13%gcc
|
||||
cuda:
|
||||
prefer:
|
||||
- spec: '@12.8.0'
|
||||
require: '@12.2.0:'
|
||||
externals:
|
||||
- modules:
|
||||
- nvhpc-nompi/24.3
|
||||
prefix: /opt/nvidia/hpc_sdk/Linux_aarch64/24.3/cuda
|
||||
spec: cuda@12.2.0%nvhpc@24.3
|
||||
extra_attributes:
|
||||
environment:
|
||||
prepend_path:
|
||||
LD_LIBRARY_PATH: /opt/nvidia/hpc_sdk/Linux_aarch64/24.3/math_libs/lib64/stubs
|
||||
curl:
|
||||
require: '%gcc@7.5.0'
|
||||
cxi-driver:
|
||||
require: '@main'
|
||||
egl:
|
||||
buildable: False
|
||||
externals:
|
||||
- spec: egl@1.5.0
|
||||
prefix: /usr/
|
||||
expat:
|
||||
require: '%gcc@7.5.0'
|
||||
fftw:
|
||||
externals:
|
||||
- modules:
|
||||
- cray-fftw/3.3.10.6
|
||||
prefix: /opt/cray/pe/fftw/3.3.10.6/aarch64
|
||||
spec: fftw@3.3.10.6+mpi+openmp~pfft_patches precision=double,float%gcc@12.3
|
||||
findutils:
|
||||
require: '%gcc@7.5.0'
|
||||
flex:
|
||||
require: '%gcc@7.5.0'
|
||||
fltk:
|
||||
require: '%gcc@7.5.0'
|
||||
fontconfig:
|
||||
require: '%gcc@7.5.0'
|
||||
gawk:
|
||||
require: '%gcc@7.5.0'
|
||||
gcc:
|
||||
externals:
|
||||
- prefix: /usr
|
||||
spec: gcc@7.5.0
|
||||
extra_attributes:
|
||||
compilers:
|
||||
c: /usr/bin/gcc
|
||||
cxx: /usr/bin/g++
|
||||
fortran: /usr/bin/gfortran
|
||||
operating_system: sles15
|
||||
target: aarch64
|
||||
modules:
|
||||
- libfabric/1.22.0
|
||||
- prefix: /usr
|
||||
spec: gcc@=12.3
|
||||
extra_attributes:
|
||||
compilers:
|
||||
c: /usr/bin/gcc-12
|
||||
cxx: /usr/bin/g++-12
|
||||
fortran: /usr/bin/gfortran-12
|
||||
operating_system: sles15
|
||||
target: aarch64
|
||||
modules:
|
||||
- libfabric/1.22.0
|
||||
- PrgEnv-gnu/8.5.0
|
||||
- gcc-native/12.3
|
||||
gdbm:
|
||||
require: '%gcc@7.5.0'
|
||||
gettext:
|
||||
require: '%gcc@7.5.0'
|
||||
git:
|
||||
require: '%gcc@7.5.0'
|
||||
gmake:
|
||||
require: '%gcc@7.5.0'
|
||||
groff:
|
||||
require: '%gcc@7.5.0'
|
||||
libbsd:
|
||||
require: '%gcc@7.5.0'
|
||||
libcxi:
|
||||
require: '@main'
|
||||
libevent:
|
||||
require: '%gcc@7.5.0'
|
||||
# Crayism
|
||||
libfabric:
|
||||
buildable: true
|
||||
require: '@main+cuda+uring fabrics=cxi,sockets,tcp,udp,xpmem'
|
||||
externals:
|
||||
- modules:
|
||||
- libfabric/1.22.0
|
||||
prefix: /opt/cray/libfabric/1.22.0
|
||||
spec: libfabric@1.22.0
|
||||
libfuse:
|
||||
buildable: false
|
||||
externals:
|
||||
- prefix: /usr
|
||||
spec: libfuse@2.9.7
|
||||
libiconv:
|
||||
require: '%gcc@7.5.0'
|
||||
libidn2:
|
||||
require: '%gcc@7.5.0'
|
||||
libmd:
|
||||
require: '%gcc@7.5.0'
|
||||
libpciaccess:
|
||||
require: '%gcc@7.5.0'
|
||||
libsigsegv:
|
||||
require: '%gcc@7.5.0'
|
||||
librsvg:
|
||||
buildable: false
|
||||
externals:
|
||||
- prefix: /usr
|
||||
spec: librsvg@2.48.0
|
||||
libtool:
|
||||
require: '%gcc@7.5.0'
|
||||
libxml2:
|
||||
require: '%gcc@7.5.0'
|
||||
llvm:
|
||||
require: '%gcc@7.5.0'
|
||||
m4:
|
||||
require: '%gcc@7.5.0'
|
||||
munge:
|
||||
buildable: false
|
||||
externals:
|
||||
- prefix: /usr
|
||||
spec: munge@0.5.15
|
||||
ncurses:
|
||||
require: '%gcc@7.5.0'
|
||||
netcdf-c:
|
||||
externals:
|
||||
- modules:
|
||||
- cray-netcdf/4.9.0.9
|
||||
prefix: /opt/cray/pe/netcdf/4.9.0.9/crayclang/17.0
|
||||
spec: netcdf-c@4.9.0.9~dap~hdf4~jna~mpi~parallel-netcdf+shared%cce@17.0.0
|
||||
- modules:
|
||||
- cray-netcdf-hdf5parallel/4.9.0.9
|
||||
prefix: /opt/cray/pe/netcdf-hdf5parallel/4.9.0.9/crayclang/17.0
|
||||
spec: netcdf-c@4.9.0.9~dap~hdf4~jna+mpi~parallel-netcdf+shared%cce@17.0.0
|
||||
- modules:
|
||||
- cray-netcdf/4.9.0.9
|
||||
prefix: /opt/cray/pe/netcdf/4.9.0.9/gnu/12.3
|
||||
spec: netcdf-c@4.9.0.9~dap~hdf4~jna~mpi~parallel-netcdf+shared%gcc@12.3
|
||||
- modules:
|
||||
- cray-netcdf-hdf5parallel/4.9.0.9
|
||||
prefix: /opt/cray/pe/netcdf-hdf5parallel/4.9.0.9/gnu/12.3
|
||||
spec: netcdf-c@4.9.0.9~dap~hdf4~jna+mpi~parallel-netcdf+shared%gcc@12.3
|
||||
netcdf-fortran:
|
||||
externals:
|
||||
- modules:
|
||||
- cray-netcdf/4.9.0.9
|
||||
prefix: /opt/cray/pe/netcdf/4.9.0.9/crayclang/17.0
|
||||
spec: netcdf-fortran@4.9.0.9~doc+shared%cce@17.0.0
|
||||
- modules:
|
||||
- cray-netcdf/4.9.0.9
|
||||
prefix: /opt/cray/pe/netcdf/4.9.0.9/gnu/12.3
|
||||
spec: netcdf-fortran@4.9.0.9~doc+shared%gcc@12.3
|
||||
ninja:
|
||||
require: '%gcc@7.5.0'
|
||||
numactl:
|
||||
require: '%gcc@7.5.0'
|
||||
nvhpc:
|
||||
externals:
|
||||
- prefix: /opt/nvidia/hpc_sdk
|
||||
spec: nvhpc@24.3
|
||||
extra_attributes:
|
||||
compilers:
|
||||
c: /opt/nvidia/hpc_sdk/Linux_aarch64/24.3/compilers/bin/nvc
|
||||
cxx: /opt/nvidia/hpc_sdk/Linux_aarch64/24.3/compilers/bin/nvc++
|
||||
fortran: /opt/nvidia/hpc_sdk/Linux_aarch64/24.3/compilers/bin/nvfortran
|
||||
operating_system: sles15
|
||||
modules: nvhpc-nompi/24.3
|
||||
extra_rpaths:
|
||||
- /opt/nvidia/hpc_sdk/Linux_aarch64/24.3/math_libs/lib64/stubs
|
||||
opal:
|
||||
require:
|
||||
- spec: '%gcc'
|
||||
- message: Opal 2022.1.0 only builds with gcc@10.4.0
|
||||
spec: '%gcc@10.4.0 ^openmpi'
|
||||
when: '@2022.1.0'
|
||||
opengl:
|
||||
require: '%gcc@7.5.0'
|
||||
openldap:
|
||||
buildable: false
|
||||
externals:
|
||||
- prefix: /usr
|
||||
spec: openldap@2.4.46
|
||||
openmpi:
|
||||
require:
|
||||
- spec: "schedulers=slurm fabrics=ofi,xpmem +cuda +internal-pmix"
|
||||
when: "@5.0.0:"
|
||||
- spec: "schedulers=slurm fabrics=ofi,xpmem +cxx +cuda +legacylaunchers"
|
||||
when: "@:5.0.0"
|
||||
openssh:
|
||||
require: '%gcc@7.5.0'
|
||||
openssl:
|
||||
require: '%gcc@7.5.0'
|
||||
parallel-netcdf:
|
||||
externals:
|
||||
- modules:
|
||||
- cray-parallel-netcdf/1.12.3.9
|
||||
prefix: /opt/cray/pe/parallel-netcdf/1.12.3.9/crayclang/17.0
|
||||
spec: parallel-netcdf@1.12.3.9+cxx+fortran%cce@17.0.0
|
||||
- modules:
|
||||
- cray-parallel-netcdf/1.12.3.9
|
||||
prefix: /opt/cray/pe/parallel-netcdf/1.12.3.9/gnu/12.3
|
||||
spec: parallel-netcdf@1.12.3.9+cxx+fortran%gcc@12.3
|
||||
perl:
|
||||
buildable: false
|
||||
externals:
|
||||
- prefix: /usr
|
||||
spec: perl@5.26.1
|
||||
pkg-config:
|
||||
require: '%gcc@7.5.0'
|
||||
pkgconf:
|
||||
require: '%gcc@7.5.0'
|
||||
pmix:
|
||||
require: '+munge'
|
||||
py-fypp:
|
||||
require: '%gcc@7.5.0'
|
||||
python:
|
||||
require: '%gcc@7.5.0'
|
||||
quantum-espresso:
|
||||
require:
|
||||
- spec: "^nvpl-blas ^nvpl-lapack"
|
||||
when: "%nvhpc"
|
||||
conflict:
|
||||
- spec: '^acfl'
|
||||
when: '%nvhpc'
|
||||
rdma-core:
|
||||
require: '%gcc@7.5.0'
|
||||
readline:
|
||||
require: '%gcc@7.5.0'
|
||||
slurm:
|
||||
buildable: false
|
||||
externals:
|
||||
- prefix: /usr
|
||||
spec: slurm@24.05.3%gcc@7.5.0 +cgroup+gtk+hwloc+mariadb+nvml+pam+pmix+restd
|
||||
sqlite:
|
||||
require: '%gcc@7.5.0'
|
||||
tar:
|
||||
require: '%gcc@7.5.0'
|
||||
texinfo:
|
||||
require: '%gcc@7.5.0'
|
||||
unuran:
|
||||
require: '%gcc@7.5.0'
|
||||
util-linux-uuid:
|
||||
require: '%gcc@7.5.0'
|
||||
util-macros:
|
||||
require: '%gcc@7.5.0'
|
||||
xpmem:
|
||||
buildable: false
|
||||
externals:
|
||||
- spec: xpmem@2.9.6-1.1
|
||||
prefix: /usr
|
||||
modules:
|
||||
- xpmem/2.9.6-1.1_20240511212657__g087dc11fc19d
|
||||
xxhash:
|
||||
require: '%gcc@7.5.0'
|
||||
xz:
|
||||
externals:
|
||||
- prefix: /usr
|
||||
spec: xz@5.2.3
|
||||
zlib:
|
||||
require: '%gcc@7.5.0'
|
||||
zstd:
|
||||
require: '%gcc@7.5.0'
|
14
env/sles15/aarch64/users/stable/spack.yaml
vendored
Normal file
14
env/sles15/aarch64/users/stable/spack.yaml
vendored
Normal file
@ -0,0 +1,14 @@
|
||||
spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
include:
|
||||
- $spack/../spack-psi/env/sles15/aarch64/sysconfigs/packages.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/sles15/aarch64/admin/stable
|
||||
specs: []
|
||||
upstreams:
|
||||
stable:
|
||||
install_tree: $spack/opt/spack/stable
|
||||
repos:
|
||||
- $spack/../user/$user/spack-repo
|
||||
view: false
|
17
env/sles15/aarch64/users/unstable/spack.yaml
vendored
Normal file
17
env/sles15/aarch64/users/unstable/spack.yaml
vendored
Normal file
@ -0,0 +1,17 @@
|
||||
spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
include:
|
||||
- $spack/../spack-psi/env/sles15/aarch64/sysconfigs/packages.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/sles15/aarch64/admin/stable
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/sles15/aarch64/admin/unstable
|
||||
specs: []
|
||||
upstreams:
|
||||
stable:
|
||||
install_tree: $spack/opt/spack/stable
|
||||
unstable:
|
||||
install_tree: $spack/opt/spack/unstable
|
||||
repos:
|
||||
- $spack/../user/$user/spack-repo
|
||||
view: false
|
1
env/sles15/x86_64/admin/stable/spack.lock
vendored
Normal file
1
env/sles15/x86_64/admin/stable/spack.lock
vendored
Normal file
File diff suppressed because one or more lines are too long
60
env/sles15/x86_64/admin/stable/spack.yaml
vendored
60
env/sles15/x86_64/admin/stable/spack.yaml
vendored
@ -3,18 +3,58 @@ spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
config:
|
||||
allow_sgid: false
|
||||
build_stage:
|
||||
- $spack/user/$user/spack-stage
|
||||
install_tree:
|
||||
root: $spack/opt/spack/stable
|
||||
include_concrete:
|
||||
- $spack/spack-psi/env/$os/$target_family/admin/unstable
|
||||
definitions:
|
||||
- compilers:
|
||||
- gcc@7.5.0
|
||||
- gcc@=12.3.0
|
||||
- intel-oneapi-compilers@=2024.1.0
|
||||
- intel-oneapi-compilers@=2022.1.0
|
||||
- gcc@=13.2.0
|
||||
- nvhpc@23.9
|
||||
- cce@17.0.0
|
||||
- gcc_7.5.0:
|
||||
- fpart@1.6.0/di4akxx
|
||||
- gcc_12.3_mpich:
|
||||
- relion@4.0.1/ve5sish #+cuda
|
||||
- gcc_13.2_openmpi:
|
||||
- opal-x@fixSolverUnits/q4ulqv3 #+cuda cuda_arch=80
|
||||
include:
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/compilers.yaml
|
||||
- $spack/../spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
- $spack/../spack-psi/env/$os/$target_family/sysconfigs/compilers.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/sles15/aarch64/admin/stable
|
||||
mirrors:
|
||||
local_stable: file:///afs/psi.ch/software/spack/stable
|
||||
local_unstable: file:///afs/psi.ch/software/spack/unstable
|
||||
specs: []
|
||||
local_psi: file:///afs/psi.ch/software/spack/testing
|
||||
modules:
|
||||
default:
|
||||
roots:
|
||||
lmod: $spack/opt/spack/stable/modulefiles
|
||||
lmod:
|
||||
cray-mpich:
|
||||
environment:
|
||||
set:
|
||||
SLURM_MPI_TYPE: 'pmix'
|
||||
LD_LIBRARY_PATH: '/opt/cray/libfabric/1.22.0/lib64'
|
||||
openmpi:
|
||||
environment:
|
||||
set:
|
||||
SLURM_MPI_TYPE: 'pmix'
|
||||
OMPI_MCA_mtl_ofi_disable_hmem: 'true'
|
||||
specs:
|
||||
- matrix:
|
||||
- [$compilers]
|
||||
- ['%gcc@7.5.0']
|
||||
- matrix:
|
||||
- [$gcc_7.5.0]
|
||||
- ['%gcc@7.5.0']
|
||||
- matrix:
|
||||
- [$gcc_12.3_mpich]
|
||||
- ['%gcc@12.3']
|
||||
- [^cray-mpich]
|
||||
- matrix:
|
||||
- [$gcc_13.2_openmpi]
|
||||
- ['%gcc@13.2']
|
||||
- [^openmpi]
|
||||
view: false
|
||||
|
37
env/sles15/x86_64/admin/testing/spack.yaml
vendored
37
env/sles15/x86_64/admin/testing/spack.yaml
vendored
@ -2,24 +2,31 @@ spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
config:
|
||||
allow_sgid: false
|
||||
build_stage:
|
||||
- $spack/user/$user/spack-stage
|
||||
install_tree:
|
||||
root: $spack/opt/spack/testing
|
||||
upstreams:
|
||||
spack-instance-1:
|
||||
install_tree: $spack/opt/spack/stable
|
||||
spack-instance-2:
|
||||
install_tree: $spack/opt/spack/unstable
|
||||
# Strongly adviced to avoid problems with buildcaches
|
||||
padded_length: 256
|
||||
include:
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/compilers.yaml
|
||||
- $spack/../spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/sles15/aarch64/admin/testing
|
||||
mirrors:
|
||||
local_unstable: file:///afs/psi.ch/software/spack/unstable
|
||||
local_testing: file:///afs/psi.ch/software/spack/testing
|
||||
local_psi: file:///afs/psi.ch/software/spack/testing
|
||||
modules:
|
||||
default:
|
||||
roots:
|
||||
lmod: $spack/opt/spack/testing/modulefiles
|
||||
lmod:
|
||||
cray-mpich:
|
||||
environment:
|
||||
set:
|
||||
SLURM_MPI_TYPE: pmix
|
||||
LD_LIBRARY_PATH: /opt/cray/libfabric/1.22.0/lib64
|
||||
openmpi:
|
||||
environment:
|
||||
set:
|
||||
SLURM_MPI_TYPE: pmix
|
||||
OMPI_MCA_mtl_ofi_disable_hmem: 'true'
|
||||
specs:
|
||||
- cp2k@2024.1%gcc~cuda
|
||||
- opal@master%gcc
|
||||
- opal@master%gcc ^openmpi
|
||||
-
|
||||
view: false
|
||||
|
1
env/sles15/x86_64/admin/unstable/spack.lock
vendored
Normal file
1
env/sles15/x86_64/admin/unstable/spack.lock
vendored
Normal file
File diff suppressed because one or more lines are too long
109
env/sles15/x86_64/admin/unstable/spack.yaml
vendored
109
env/sles15/x86_64/admin/unstable/spack.yaml
vendored
@ -2,22 +2,103 @@ spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
config:
|
||||
allow_sgid: false
|
||||
build_stage:
|
||||
- $spack/user/$user/spack-stage
|
||||
install_tree:
|
||||
root: $spack/opt/spack/unstable
|
||||
upstreams:
|
||||
spack-instance-1:
|
||||
install_tree: $spack/opt/spack/stable
|
||||
include_concrete:
|
||||
- $spack/spack-psi/env/$os/$target_family/admin/testing
|
||||
definitions:
|
||||
- compilers:
|
||||
- gcc@7.5.0
|
||||
- gcc@9.5.0/ow3yhui
|
||||
- gcc@=12.3
|
||||
- intel-oneapi-compilers@=2024.1.0
|
||||
- intel-oneapi-compilers@=2022.1.0
|
||||
- gcc@=13.2.0 arch=linux-sles15-x86_64
|
||||
- nvhpc@23.9
|
||||
- cce@17.0.0
|
||||
- gcc_7.5.0:
|
||||
- fpart@1.6.0/di4akxx
|
||||
- visit@3.3.3/fo37wwb
|
||||
- gcc_12.3:
|
||||
- fastqc@0.12.1/eyuqqvf
|
||||
- ffbidx@main/lfacuhw
|
||||
- star@2.7.11a/gdgr2ea
|
||||
- sratoolkit@3.1.1/7oqp6a3
|
||||
- gcc_13.2:
|
||||
- dmtcp@3.0.0/e76t6c5
|
||||
- gams@49.1/vztjqs4
|
||||
- gcc_13.2_openmpi:
|
||||
- opal-x@fixSolverUnits/q4ulqv3 #+cuda cuda_arch=80
|
||||
- gcc_12.3_mpich:
|
||||
- cp2k@2024.1/2jesise #~cuda
|
||||
- cp2k@2024.1/zqm5fme #+cuda
|
||||
- relion@4.0.1/ve5sish
|
||||
- quantum-espresso@7.3.1/n6mulig #~cuda
|
||||
- opal@2024.1.0/mhg3mdx
|
||||
- py-alphafold@2.3.2/xkw7tfm #+cuda
|
||||
- sundials@7.0.0/xxysszi #sundials@7.0.0+ARKODE+CVODE+CVODES+IDA+IDAS+KINSOL+cuda+examples+examples-install~f2003~fcmix~ginkgo~hypre~int64~ipo~klu~kokkos~kokkos-kernels~lapack~magma~monitoring+mpi+openmp~petsc~profiling~pthread~raja~rocm+shared+static~superlu-dist~superlu-mt~sycl~trilinos build_system=cmake build_type=Release cstd=99 cuda_arch=80 cxxstd=14 generator=make logging-level=2 precision=double
|
||||
- gcc_9.5.0_openmpi:
|
||||
- q-e-sirius@develop-ristretto/bb4v7wz
|
||||
- gcc_12.3_openmpi:
|
||||
- gromacs@2024.1/3n7qspb #+cuda
|
||||
- hdf5@1.14.3/wqcdnm7 #+mpi ^openmpi@5.0.3%gcc@12.3
|
||||
- intel_2021.6.0:
|
||||
- hdf5@1.14.3/yrxkczx
|
||||
- nvhpc_23.9_openmpi:
|
||||
- quantum-espresso@7.3.1/le35al7 #+cuda
|
||||
include:
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/compilers.yaml
|
||||
- $spack/../spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/sles15/aarch64/admin/unstable
|
||||
mirrors:
|
||||
local_stable: file:///afs/psi.ch/software/spack/stable
|
||||
local_unstable: file:///afs/psi.ch/software/spack/unstable
|
||||
local_testing: file:///afs/psi.ch/software/spack/testing
|
||||
specs: []
|
||||
local_psi: file:///afs/psi.ch/software/spack/testing
|
||||
modules:
|
||||
default:
|
||||
roots:
|
||||
lmod: $spack/opt/spack/unstable/modulefiles
|
||||
lmod:
|
||||
cray-mpich:
|
||||
environment:
|
||||
set:
|
||||
SLURM_MPI_TYPE: 'pmix'
|
||||
LD_LIBRARY_PATH: /opt/cray/libfabric/1.22.0/lib64
|
||||
openmpi:
|
||||
environment:
|
||||
set:
|
||||
SLURM_MPI_TYPE: 'pmix'
|
||||
OMPI_MCA_mtl_ofi_disable_hmem: 'true'
|
||||
specs:
|
||||
- matrix:
|
||||
- [$compilers]
|
||||
- ['%gcc@7.5.0']
|
||||
- matrix:
|
||||
- [$gcc_7.5.0]
|
||||
- ['%gcc@7.5.0']
|
||||
- matrix:
|
||||
- [$gcc_12.3]
|
||||
- ['%gcc@12.3']
|
||||
- matrix:
|
||||
- [$gcc_13.2]
|
||||
- ['%gcc@13.2']
|
||||
- matrix:
|
||||
- [$gcc_13.2_openmpi]
|
||||
- ['%gcc@13.2']
|
||||
- [^openmpi]
|
||||
- matrix:
|
||||
- [$gcc_12.3_mpich]
|
||||
- ['%gcc@12.3']
|
||||
- [^cray-mpich]
|
||||
- matrix:
|
||||
- [$gcc_9.5.0_openmpi]
|
||||
- ['%gcc@9.5.0']
|
||||
- [^openmpi]
|
||||
- matrix:
|
||||
- [$gcc_12.3_openmpi]
|
||||
- ['%gcc@12.3']
|
||||
- [^openmpi]
|
||||
- matrix:
|
||||
- [$intel_2021.6.0]
|
||||
- ['%intel@2021.6.0']
|
||||
- matrix:
|
||||
- [$nvhpc_23.9_openmpi]
|
||||
- ['%nvhpc@23.9']
|
||||
- [^openmpi]
|
||||
view: false
|
||||
|
109
env/sles15/x86_64/sysconfigs/compilers.yaml
vendored
109
env/sles15/x86_64/sysconfigs/compilers.yaml
vendored
@ -1,62 +1,57 @@
|
||||
compilers:
|
||||
- compiler:
|
||||
spec: cce@=17.0.0
|
||||
paths:
|
||||
cc: cc
|
||||
cxx: CC
|
||||
f77: ftn
|
||||
fc: ftn
|
||||
flags: {}
|
||||
operating_system: sles15
|
||||
target: x86_64
|
||||
modules:
|
||||
- libfabric/1.15.2.0
|
||||
- PrgEnv-cray/8.5.0
|
||||
- cce/17.0.0
|
||||
environment: {}
|
||||
extra_rpaths: []
|
||||
spec: intel@=2021.6.0
|
||||
paths:
|
||||
cc: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-sles15-x86_64/gcc-7.5.0/intel-oneapi-compilers-2022.1.0-bf6lcbnmvgeb57jaihsfu22xlbgmmqe7/compiler/2022.1.0/linux/bin/intel64/icc
|
||||
cxx: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-sles15-x86_64/gcc-7.5.0/intel-oneapi-compilers-2022.1.0-bf6lcbnmvgeb57jaihsfu22xlbgmmqe7/compiler/2022.1.0/linux/bin/intel64/icpc
|
||||
f77: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-sles15-x86_64/gcc-7.5.0/intel-oneapi-compilers-2022.1.0-bf6lcbnmvgeb57jaihsfu22xlbgmmqe7/compiler/2022.1.0/linux/bin/intel64/ifort
|
||||
fc: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-sles15-x86_64/gcc-7.5.0/intel-oneapi-compilers-2022.1.0-bf6lcbnmvgeb57jaihsfu22xlbgmmqe7/compiler/2022.1.0/linux/bin/intel64/ifort
|
||||
flags: {}
|
||||
operating_system: sles15
|
||||
target: x86_64
|
||||
modules:
|
||||
- libfabric/1.22.0
|
||||
environment: {}
|
||||
extra_rpaths: []
|
||||
- compiler:
|
||||
spec: gcc@=12.3
|
||||
paths:
|
||||
cc: /usr/bin/gcc-12
|
||||
cxx: /usr/bin/g++-12
|
||||
f77: /usr/bin/gfortran-12
|
||||
fc: /usr/bin/gfortran-12
|
||||
flags: {}
|
||||
operating_system: sles15
|
||||
target: x86_64
|
||||
modules:
|
||||
- libfabric/1.15.2.0
|
||||
- PrgEnv-gnu/8.5.0
|
||||
- gcc-native/12.3
|
||||
environment: {}
|
||||
extra_rpaths: []
|
||||
spec: oneapi@=2022.1.0
|
||||
paths:
|
||||
cc: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-sles15-x86_64/gcc-7.5.0/intel-oneapi-compilers-2022.1.0-bf6lcbnmvgeb57jaihsfu22xlbgmmqe7/compiler/2022.1.0/linux/bin/icx
|
||||
cxx: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-sles15-x86_64/gcc-7.5.0/intel-oneapi-compilers-2022.1.0-bf6lcbnmvgeb57jaihsfu22xlbgmmqe7/compiler/2022.1.0/linux/bin/icpx
|
||||
f77: null
|
||||
fc: null
|
||||
flags: {}
|
||||
operating_system: sles15
|
||||
target: x86_64
|
||||
modules:
|
||||
- libfabric/1.22.0
|
||||
environment: {}
|
||||
extra_rpaths: []
|
||||
- compiler:
|
||||
spec: gcc@=7.5.0
|
||||
paths:
|
||||
cc: /usr/bin/gcc
|
||||
cxx: /usr/bin/g++
|
||||
f77: /usr/bin/gfortran
|
||||
fc: /usr/bin/gfortran
|
||||
flags: {}
|
||||
operating_system: sles15
|
||||
target: x86_64
|
||||
modules:
|
||||
- libfabric/1.15.2.0
|
||||
environment: {}
|
||||
extra_rpaths: []
|
||||
spec: gcc@=13.2.0
|
||||
paths:
|
||||
cc: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-sles15-x86_64/gcc-7.5.0/gcc-13.2.0-2k3w3v2u5u6bfnoxl5rgnnna4on3lku7/bin/gcc
|
||||
cxx: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-sles15-x86_64/gcc-7.5.0/gcc-13.2.0-2k3w3v2u5u6bfnoxl5rgnnna4on3lku7/bin/g++
|
||||
f77: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-sles15-x86_64/gcc-7.5.0/gcc-13.2.0-2k3w3v2u5u6bfnoxl5rgnnna4on3lku7/bin/gfortran
|
||||
fc: /afs/psi.ch/sys/spack/0.22.0/opt/spack/stable/linux-sles15-x86_64/gcc-7.5.0/gcc-13.2.0-2k3w3v2u5u6bfnoxl5rgnnna4on3lku7/bin/gfortran
|
||||
flags: {}
|
||||
operating_system: sles15
|
||||
target: x86_64
|
||||
modules:
|
||||
- libfabric/1.22.0
|
||||
environment: {}
|
||||
extra_rpaths: []
|
||||
- compiler:
|
||||
spec: nvhpc@=22.3
|
||||
paths:
|
||||
cc: /opt/nvidia/hpc_sdk/Linux_x86_64/22.3/compilers/bin/nvc
|
||||
cxx: /opt/nvidia/hpc_sdk/Linux_x86_64/22.3/compilers/bin/nvc++
|
||||
f77: /opt/nvidia/hpc_sdk/Linux_x86_64/22.3/compilers/bin/nvfortran
|
||||
fc: /opt/nvidia/hpc_sdk/Linux_x86_64/22.3/compilers/bin/nvfortran
|
||||
flags: {}
|
||||
operating_system: sles15
|
||||
target: x86_64
|
||||
modules:
|
||||
- libfabric/1.15.2.0
|
||||
- nvhpc-nompi/22.3
|
||||
environment: {}
|
||||
extra_rpaths: []
|
||||
spec: gcc@=9.5.0
|
||||
paths:
|
||||
cc: /afs/psi.ch/sys/spack/0.23.0/opt/spack/unstable/linux-sles15-x86_64/gcc-7.5.0/gcc-9.5.0-ow3yhuibzp7u753hyh5xngfgegxgijxp/bin/gcc
|
||||
cxx: /afs/psi.ch/sys/spack/0.23.0/opt/spack/unstable/linux-sles15-x86_64/gcc-7.5.0/gcc-9.5.0-ow3yhuibzp7u753hyh5xngfgegxgijxp/bin/g++
|
||||
f77: /afs/psi.ch/sys/spack/0.23.0/opt/spack/unstable/linux-sles15-x86_64/gcc-7.5.0/gcc-9.5.0-ow3yhuibzp7u753hyh5xngfgegxgijxp/bin/gfortran
|
||||
fc: /afs/psi.ch/sys/spack/0.23.0/opt/spack/unstable/linux-sles15-x86_64/gcc-7.5.0/gcc-9.5.0-ow3yhuibzp7u753hyh5xngfgegxgijxp/bin/gfortran
|
||||
flags: {}
|
||||
operating_system: sles15
|
||||
target: x86_64
|
||||
modules:
|
||||
- libfabric/1.22.0
|
||||
environment: {}
|
||||
extra_rpaths: []
|
||||
|
183
env/sles15/x86_64/sysconfigs/packages.yaml
vendored
183
env/sles15/x86_64/sysconfigs/packages.yaml
vendored
@ -1,17 +1,26 @@
|
||||
packages:
|
||||
all:
|
||||
compiler: [gcc@12.3, cce, nvhpc]
|
||||
compiler: [gcc, nvhpc, cce]
|
||||
prefer:
|
||||
- spec: '^openmpi'
|
||||
when: '^mpi'
|
||||
providers:
|
||||
blas: [cray-libsci, openblas, nvhpc]
|
||||
lapack: [cray-libsci, openblas, nvhpc]
|
||||
mpi: [cray-mpich, openmpi]
|
||||
blas: [openblas, nvhpc, cray-libsci]
|
||||
lapack: [openblas, nvhpc, cray-libsci]
|
||||
mpi: [openmpi, cray-mpich]
|
||||
pkgconfig: [pkg-config]
|
||||
scalapack: [cray-libsci]
|
||||
target: [x86_64]
|
||||
# Grace Hopper arch
|
||||
require:
|
||||
- spec: "os=sles15"
|
||||
- spec: "target=x86_64"
|
||||
when: "%gcc"
|
||||
- spec: "target=zen3"
|
||||
when: "%nvhpc"
|
||||
variants:
|
||||
- cuda_arch=90
|
||||
amrex:
|
||||
- cuda_arch=80
|
||||
autoconf:
|
||||
require: '%gcc@7.5.0'
|
||||
automake:
|
||||
require: '%gcc@7.5.0'
|
||||
berkeley-db:
|
||||
require: '%gcc@7.5.0'
|
||||
@ -19,45 +28,77 @@ packages:
|
||||
require: '%gcc@7.5.0'
|
||||
ca-certificates-mozilla:
|
||||
require: '%gcc@7.5.0'
|
||||
cce:
|
||||
externals:
|
||||
- modules:
|
||||
- libfabric/1.22.0
|
||||
- PrgEnv-cray/8.5.0
|
||||
- cce/17.0.0
|
||||
spec: cce@=17.0.0
|
||||
extra_attributes:
|
||||
compilers:
|
||||
c: cc
|
||||
cxx: CC
|
||||
fortran: ftn
|
||||
operating_system: sles15
|
||||
target: x86_64
|
||||
cairo:
|
||||
require: '%gcc@7.5.0'
|
||||
cassini-headers:
|
||||
require: '@main'
|
||||
cmake:
|
||||
require: '%gcc@7.5.0'
|
||||
require: '%gcc'
|
||||
coreutils:
|
||||
require: '%gcc@7.5.0'
|
||||
cray-libsci:
|
||||
buildable: false
|
||||
externals:
|
||||
- prefix: /opt/cray/pe/libsci/23.12.5/GNU/12.3/x86_64/
|
||||
- modules:
|
||||
- cray-libsci
|
||||
prefix: /opt/cray/pe/libsci/23.12.5/cray/17.0/x86_64
|
||||
spec: cray-libsci@23.12.5%cce@17.0.0 +mpi +openmp
|
||||
- prefix: /opt/cray/pe/libsci/23.12.5/GNU/12.3/x86_64/
|
||||
- modules:
|
||||
- cray-libsci
|
||||
prefix: /opt/cray/pe/libsci/23.12.5/GNU/12.3/x86_64/
|
||||
spec: cray-libsci@23.12.5%gcc@12.3 +mpi +openmp
|
||||
cray-mpich:
|
||||
buildable: false
|
||||
externals:
|
||||
- modules:
|
||||
- PrgEnv-cce/17.0.0
|
||||
- cray-mpich
|
||||
prefix: /opt/cray/pe/mpich/8.1.28/ofi/cray/17.0
|
||||
spec: cray-mpich@8.1.28%cce@17.0.0
|
||||
- modules:
|
||||
- PrgEnv-gnu/8.5.0
|
||||
- cray-mpich
|
||||
prefix: /opt/cray/pe/mpich/8.1.28/ofi/gnu/12.3
|
||||
spec: cray-mpich@8.1.28%gcc@12.3
|
||||
cray-pmi:
|
||||
buildable: false
|
||||
externals:
|
||||
- modules:
|
||||
- cray-pmi
|
||||
prefix: /opt/cray/pe/pmi/6.1.13
|
||||
spec: cray-pmi@6.1.13%gcc
|
||||
ctffind:
|
||||
require: '%gcc@7.5.0'
|
||||
cuda:
|
||||
prefer:
|
||||
- spec: '@12.8.0'
|
||||
require: '@12.2.0:'
|
||||
externals:
|
||||
- modules:
|
||||
- nvhpc-nompi/23.9
|
||||
prefix: /opt/nvidia/hpc_sdk/Linux_x86_64/23.9/cuda
|
||||
spec: cuda@12.2.0%nvhpc@23.9
|
||||
curl:
|
||||
require: '%gcc@7.5.0'
|
||||
cxi-driver:
|
||||
require: '@main'
|
||||
expat:
|
||||
require: '%gcc@7.5.0'
|
||||
fftw:
|
||||
externals:
|
||||
- prefix: /opt/cray/pe/fftw/3.3.10.6/x86_64
|
||||
- modules:
|
||||
- cray-fftw/3.3.10.6
|
||||
prefix: /opt/cray/pe/fftw/3.3.10.6/x86_64
|
||||
spec: fftw@3.3.10.6+mpi+openmp~pfft_patches precision=double,float%gcc@12.3
|
||||
findutils:
|
||||
require: '%gcc@7.5.0'
|
||||
@ -70,38 +111,60 @@ packages:
|
||||
gawk:
|
||||
require: '%gcc@7.5.0'
|
||||
gcc:
|
||||
require: '%gcc@7.5.0'
|
||||
externals:
|
||||
- prefix: /usr
|
||||
spec: gcc@7.5.0
|
||||
extra_attributes:
|
||||
compilers:
|
||||
c: /usr/bin/gcc
|
||||
cxx: /usr/bin/g++
|
||||
fortran: /usr/bin/gfortran
|
||||
operating_system: sles15
|
||||
target: x86_64
|
||||
modules:
|
||||
- libfabric/1.22.0
|
||||
- prefix: /usr
|
||||
spec: gcc@=12.3
|
||||
extra_attributes:
|
||||
compilers:
|
||||
c: /usr/bin/gcc-12
|
||||
cxx: /usr/bin/g++-12
|
||||
fortran: /usr/bin/gfortran-12
|
||||
operating_system: sles15
|
||||
target: x86_64
|
||||
modules:
|
||||
- libfabric/1.22.0
|
||||
- PrgEnv-gnu/8.5.0
|
||||
- gcc-native/12.3
|
||||
gdbm:
|
||||
require: '%gcc@7.5.0'
|
||||
gettext:
|
||||
require: '%gcc@7.5.0'
|
||||
externals:
|
||||
- prefix: /usr
|
||||
spec: 'gettext@0.20.2'
|
||||
git:
|
||||
require: '%gcc@7.5.0'
|
||||
gmake:
|
||||
require: '%gcc@7.5.0'
|
||||
groff:
|
||||
require: '%gcc@7.5.0'
|
||||
hdf5:
|
||||
externals:
|
||||
- prefix: /opt/cray/pe/hdf5/1.12.2.9/crayclang/17.0
|
||||
spec: hdf5@1.12.2+cxx+fortran+hl~mpi+shared~szip~threadsafe%cce@17.0.0
|
||||
- prefix: /opt/cray/pe/hdf5-parallel/1.12.2.9/crayclang/17.0
|
||||
spec: hdf5@1.12.2+cxx+fortran+hl+mpi+shared~szip~threadsafe%cce@17.0.0
|
||||
- prefix: /opt/cray/pe/hdf5/1.12.2.9/gnu/12.3
|
||||
spec: hdf5@1.12.2+cxx+fortran+hl~mpi+shared~szip~threadsafe%gcc@12.3
|
||||
- prefix: /opt/cray/pe/hdf5-parallel/1.12.2.9/gnu/12.3
|
||||
spec: hdf5@1.12.2+cxx+fortran+hl+mpi+shared~szip~threadsafe%gcc@12.3
|
||||
gtkplus:
|
||||
require: 'default_library=shared,static'
|
||||
libbsd:
|
||||
require: '%gcc@7.5.0'
|
||||
libcxi:
|
||||
require: '@main'
|
||||
libevent:
|
||||
require: '%gcc@7.5.0'
|
||||
# Crayism
|
||||
libfabric:
|
||||
buildable: false
|
||||
buildable: true
|
||||
require: '@main+cuda+uring fabrics=cxi,sockets,tcp,udp,xpmem'
|
||||
externals:
|
||||
- modules:
|
||||
- libfabric/1.15.2.0
|
||||
spec: libfabric@1.15.2.0
|
||||
- libfabric/1.22.0
|
||||
prefix: /opt/cray/libfabric/1.22.0
|
||||
spec: libfabric@1.22.0
|
||||
libiconv:
|
||||
require: '%gcc@7.5.0'
|
||||
libidn2:
|
||||
@ -129,32 +192,56 @@ packages:
|
||||
require: '%gcc@7.5.0'
|
||||
netcdf-c:
|
||||
externals:
|
||||
- prefix: /opt/cray/pe/netcdf/4.9.0.9/crayclang/17.0
|
||||
- modules:
|
||||
- cray-netcdf/4.9.0.9
|
||||
prefix: /opt/cray/pe/netcdf/4.9.0.9/crayclang/17.0
|
||||
spec: netcdf-c@4.9.0.9~dap~hdf4~jna~mpi~parallel-netcdf+shared%cce@17.0.0
|
||||
- prefix: /opt/cray/pe/netcdf-hdf5parallel/4.9.0.9/crayclang/17.0
|
||||
- modules:
|
||||
- cray-netcdf-hdf5parallel/4.9.0.9
|
||||
prefix: /opt/cray/pe/netcdf-hdf5parallel/4.9.0.9/crayclang/17.0
|
||||
spec: netcdf-c@4.9.0.9~dap~hdf4~jna+mpi~parallel-netcdf+shared%cce@17.0.0
|
||||
- prefix: /opt/cray/pe/netcdf/4.9.0.9/gnu/12.3
|
||||
- modules:
|
||||
- cray-netcdf/4.9.0.9
|
||||
prefix: /opt/cray/pe/netcdf/4.9.0.9/gnu/12.3
|
||||
spec: netcdf-c@4.9.0.9~dap~hdf4~jna~mpi~parallel-netcdf+shared%gcc@12.3
|
||||
- prefix: /opt/cray/pe/netcdf-hdf5parallel/4.9.0.9/gnu/12.3
|
||||
- modules:
|
||||
- cray-netcdf-hdf5parallel/4.9.0.9
|
||||
prefix: /opt/cray/pe/netcdf-hdf5parallel/4.9.0.9/gnu/12.3
|
||||
spec: netcdf-c@4.9.0.9~dap~hdf4~jna+mpi~parallel-netcdf+shared%gcc@12.3
|
||||
netcdf-fortran:
|
||||
externals:
|
||||
- prefix: /opt/cray/pe/netcdf/4.9.0.9/crayclang/17.0
|
||||
- modules:
|
||||
- cray-netcdf/4.9.0.9
|
||||
prefix: /opt/cray/pe/netcdf/4.9.0.9/crayclang/17.0
|
||||
spec: netcdf-fortran@4.9.0.9~doc+shared%cce@17.0.0
|
||||
- prefix: /opt/cray/pe/netcdf/4.9.0.9/gnu/12.3
|
||||
- modules:
|
||||
- cray-netcdf/4.9.0.9
|
||||
prefix: /opt/cray/pe/netcdf/4.9.0.9/gnu/12.3
|
||||
spec: netcdf-fortran@4.9.0.9~doc+shared%gcc@12.3
|
||||
ninja:
|
||||
require: '%gcc@7.5.0'
|
||||
numactl:
|
||||
require: '%gcc@7.5.0'
|
||||
nvhpc:
|
||||
externals:
|
||||
- spec: nvhpc@23.9
|
||||
prefix: /opt/nvidia/hpc_sdk
|
||||
extra_attributes:
|
||||
compilers:
|
||||
c: /opt/nvidia/hpc_sdk/Linux_x86_64/23.9/compilers/bin/nvc
|
||||
cxx: /opt/nvidia/hpc_sdk/Linux_x86_64/23.9/compilers/bin/nvc++
|
||||
fortran: /opt/nvidia/hpc_sdk/Linux_x86_64/23.9/compilers/bin/nvfortran
|
||||
operating_system: sles15
|
||||
modules: nvhpc-nompi/23.9
|
||||
environment:
|
||||
prepend_path:
|
||||
LD_LIBRARY_PATH: '/opt/nvidia/hpc_sdk/Linux_x86_64/23.9/compilers/lib:/opt/nvidia/hpc_sdk/Linux_x86_64/23.9/math_libs/lib64/stubs'
|
||||
opal:
|
||||
require:
|
||||
- spec: '%gcc'
|
||||
- message: Opal 2022.1.0 only builds with gcc@10.4.0
|
||||
spec: '%gcc@10.4.0 ^openmpi'
|
||||
when: '@2022.1.0'
|
||||
openblas:
|
||||
require: '%gcc@7.5.0'
|
||||
opengl:
|
||||
require: '%gcc@7.5.0'
|
||||
openldap:
|
||||
@ -164,16 +251,23 @@ packages:
|
||||
spec: openldap@2.4.46
|
||||
openmpi:
|
||||
require:
|
||||
- schedulers=slurm fabrics=ofi +pmi pmi-interface=cray +cxx +cxx_exceptions +cuda +legacylaunchers
|
||||
- spec: "schedulers=slurm fabrics=ofi,xpmem +cuda +internal-pmix"
|
||||
when: "@5.0.0:"
|
||||
- spec: "schedulers=slurm fabrics=ofi,xpmem +pmi +cxx +cxx_exceptions +cuda +legacylaunchers"
|
||||
when: "@:5.0.0"
|
||||
openssh:
|
||||
require: '%gcc@7.5.0'
|
||||
openssl:
|
||||
require: '%gcc@7.5.0'
|
||||
parallel-netcdf:
|
||||
externals:
|
||||
- prefix: /opt/cray/pe/parallel-netcdf/1.12.3.9/crayclang/17.0
|
||||
- modules:
|
||||
- cray-parallel-netcdf/1.12.3.9
|
||||
prefix: /opt/cray/pe/parallel-netcdf/1.12.3.9/crayclang/17.0
|
||||
spec: parallel-netcdf@1.12.3.9+cxx+fortran%cce@17.0.0
|
||||
- prefix: /opt/cray/pe/parallel-netcdf/1.12.3.9/gnu/12.3
|
||||
- modules:
|
||||
- cray-parallel-netcdf/1.12.3.9
|
||||
prefix: /opt/cray/pe/parallel-netcdf/1.12.3.9/gnu/12.3
|
||||
spec: parallel-netcdf@1.12.3.9+cxx+fortran%gcc@12.3
|
||||
perl:
|
||||
buildable: false
|
||||
@ -184,6 +278,8 @@ packages:
|
||||
require: '%gcc@7.5.0'
|
||||
pkgconf:
|
||||
require: '%gcc@7.5.0'
|
||||
pmix:
|
||||
require: '+munge'
|
||||
py-fypp:
|
||||
require: '%gcc@7.5.0'
|
||||
python:
|
||||
@ -199,7 +295,7 @@ packages:
|
||||
buildable: false
|
||||
externals:
|
||||
- prefix: /usr
|
||||
spec: slurm@23-11-0-1 +pmix +hwloc +hdf5 +mariadb +pam
|
||||
spec: slurm@23.11.8%gcc@7.5.0 +cgroup+gtk+hwloc+mariadb+nvml+pam+pmix+restd
|
||||
sqlite:
|
||||
require: '%gcc@7.5.0'
|
||||
tar:
|
||||
@ -217,6 +313,7 @@ packages:
|
||||
externals:
|
||||
- modules:
|
||||
- xpmem/2.8.2-1.0_3.9__g84a27a5.shasta
|
||||
prefix: /usr
|
||||
spec: xpmem@2.8.2-1
|
||||
xxhash:
|
||||
require: '%gcc@7.5.0'
|
||||
|
24
env/sles15/x86_64/users/stable/spack.yaml
vendored
24
env/sles15/x86_64/users/stable/spack.yaml
vendored
@ -1,17 +1,15 @@
|
||||
spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
config:
|
||||
allow_sgid: false
|
||||
build_stage:
|
||||
- $spack/user/$user/spack-stage
|
||||
install_tree:
|
||||
root: $spack/user/$user/spack-install
|
||||
upstreams:
|
||||
spack-instance-1:
|
||||
install_tree: $spack/opt/spack/stable
|
||||
include:
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/compilers.yaml
|
||||
specs:
|
||||
include:
|
||||
- $spack/../spack-psi/env/sles15/x86_64/sysconfigs/packages.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/sles15/x86_64/admin/stable
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/sles15/aarch64/admin/stable
|
||||
specs: []
|
||||
upstreams:
|
||||
stable:
|
||||
install_tree: $spack/opt/spack/stable
|
||||
repos:
|
||||
- $spack/../user/$user/spack-repo
|
||||
view: false
|
||||
|
30
env/sles15/x86_64/users/unstable/spack.yaml
vendored
30
env/sles15/x86_64/users/unstable/spack.yaml
vendored
@ -1,19 +1,19 @@
|
||||
spack:
|
||||
concretizer:
|
||||
unify: false
|
||||
config:
|
||||
allow_sgid: false
|
||||
build_stage:
|
||||
- $spack/user/$user/spack-stage
|
||||
install_tree:
|
||||
root: $spack/user/$user/spack-install
|
||||
upstreams:
|
||||
spack-instance-1:
|
||||
install_tree: $spack/opt/spack/stable
|
||||
spack-instance-2:
|
||||
install_tree: $spack/opt/spack/unstable
|
||||
include:
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/packages.yaml
|
||||
- $spack/spack-psi/env/$os/$target_family/sysconfigs/compilers.yaml
|
||||
specs:
|
||||
include:
|
||||
- $spack/../spack-psi/env/sles15/x86_64/sysconfigs/packages.yaml
|
||||
include_concrete:
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/sles15/x86_64/admin/stable
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/sles15/x86_64/admin/unstable
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/sles15/aarch64/admin/stable
|
||||
- /afs/psi.ch/sys/spack/spack-psi/env/sles15/aarch64/admin/unstable
|
||||
specs: []
|
||||
upstreams:
|
||||
stable:
|
||||
install_tree: $spack/opt/spack/stable
|
||||
unstable:
|
||||
install_tree: $spack/opt/spack/unstable
|
||||
repos:
|
||||
- $spack/../user/$user/spack-repo
|
||||
view: false
|
||||
|
18
packages/cuda/package.py
Normal file
18
packages/cuda/package.py
Normal file
@ -0,0 +1,18 @@
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
|
||||
from spack.package import *
|
||||
from spack.pkg.builtin.cuda import Cuda as SpackCuda
|
||||
|
||||
|
||||
class Cuda(SpackCuda):
|
||||
|
||||
def setup_run_environment(self, env):
|
||||
super().setup_run_environment(env)
|
||||
|
||||
if '%nvhpc' in self.spec:
|
||||
env.prepend_path("LD_LIBRARY_PATH", self.prefix.lib64)
|
||||
env.prepend_path("LD_LIBRARY_PATH", join_path(self.prefix, '../math_libs/lib64'))
|
14
packages/gams/package.py
Normal file
14
packages/gams/package.py
Normal file
@ -0,0 +1,14 @@
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
import os
|
||||
|
||||
from spack.package import *
|
||||
from spack.pkg.builtin.gams import Gams as SpackGams
|
||||
|
||||
|
||||
class Gams(SpackGams):
|
||||
version("48.1", md5="5a59a973edfc4e3170b9535760593d62", expand=False)
|
||||
version("49.1", md5="bc9b82d015c9672f8c153003c7a5dd2a", expand=False)
|
@ -5,9 +5,71 @@
|
||||
|
||||
|
||||
from spack.package import *
|
||||
from spack.pkg.builtin.h5hut import H5hut as SpackH5hut
|
||||
|
||||
|
||||
class H5hut(SpackH5hut):
|
||||
class H5hut(AutotoolsPackage):
|
||||
"""H5hut (HDF5 Utility Toolkit).
|
||||
High-Performance I/O Library for Particle-based Simulations."""
|
||||
|
||||
homepage = "https://amas.psi.ch/H5hut/"
|
||||
url = "https://amas.web.psi.ch/Downloads/H5hut/H5hut-2.0.0rc3.tar.gz"
|
||||
git = "https://gitlab.psi.ch/H5hut/src.git"
|
||||
|
||||
version("2.0.0rc7", sha256="bc058c4817c356b7b7acfe386c586923103b90bdfa83575db3a91754767e6fab")
|
||||
version("2.0.0rc6", sha256="980a5c634877265bd3a862fbd439d973d44be9c1d2f840c3635e8c6375d62d7e")
|
||||
version("2.0.0rc3", sha256="1ca9a9478a99e1811ecbca3c02cc49258050d339ffb1a170006eab4ab2a01790")
|
||||
|
||||
version("master", branch="master")
|
||||
|
||||
variant("fortran", default=True, description="Enable Fortran support")
|
||||
variant("mpi", default=True, description="Enable MPI support")
|
||||
|
||||
depends_on("autoconf", type="build", when="build_system=autotools")
|
||||
depends_on("automake", type="build", when="build_system=autotools")
|
||||
depends_on("libtool", type="build", when="build_system=autotools")
|
||||
|
||||
depends_on("mpi", when="+mpi")
|
||||
# h5hut +mpi uses the obsolete function H5Pset_fapl_mpiposix:
|
||||
depends_on("hdf5@1.8:+mpi", when="+mpi")
|
||||
depends_on("hdf5@1.8:", when="~mpi")
|
||||
|
||||
# If built in parallel, the following error message occurs:
|
||||
# install: .libs/libH5hut.a: No such file or directory
|
||||
parallel = False
|
||||
|
||||
@run_before("configure")
|
||||
def validate(self):
|
||||
"""Checks if Fortran compiler is available."""
|
||||
|
||||
if "+fortran" in self.spec and not self.compiler.fc:
|
||||
raise RuntimeError("Cannot build Fortran variant without a Fortran compiler.")
|
||||
|
||||
def flag_handler(self, name, flags):
|
||||
build_system_flags = []
|
||||
if name == "cflags" and self.spec.version < Version("2.0.0rc7"):
|
||||
build_system_flags = ["-DH5_USE_110_API"]
|
||||
return flags, None, build_system_flags
|
||||
|
||||
def autoreconf(self, spec, prefix):
|
||||
which("bash")("autogen.sh")
|
||||
|
||||
def configure_args(self):
|
||||
spec = self.spec
|
||||
config_args = ["--enable-shared"]
|
||||
|
||||
if "+fortran" in spec:
|
||||
config_args.append("--enable-fortran")
|
||||
|
||||
if "+mpi" in spec:
|
||||
config_args.extend(
|
||||
[
|
||||
"--enable-parallel",
|
||||
"CC={0}".format(spec["mpi"].mpicc),
|
||||
"CXX={0}".format(spec["mpi"].mpicxx),
|
||||
]
|
||||
)
|
||||
|
||||
if "+fortran" in spec:
|
||||
config_args.append("FC={0}".format(spec["mpi"].mpifc))
|
||||
|
||||
return config_args
|
||||
|
99
packages/ippl/package.py
Normal file
99
packages/ippl/package.py
Normal file
@ -0,0 +1,99 @@
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
# ----------------------------------------------------------------------------
|
||||
# If you submit this package back to Spack as a pull request,
|
||||
# please first remove this boilerplate and all FIXME comments.
|
||||
#
|
||||
# This is a template package file for Spack. We've put "FIXME"
|
||||
# next to all the things you'll want to change. Once you've handled
|
||||
# them, you can save this file and test your package like this:
|
||||
#
|
||||
# spack install ippl
|
||||
#
|
||||
# You can edit this file again by typing:
|
||||
#
|
||||
# spack edit ippl
|
||||
#
|
||||
# See the Spack documentation for more information on packaging.
|
||||
# ----------------------------------------------------------------------------
|
||||
|
||||
from spack.package import *
|
||||
|
||||
|
||||
class Ippl(CMakePackage, CudaPackage):
|
||||
"""Independent Parallel Particle Layer (IPPL) is a performance portable C++ library for Particle-Mesh methods. IPPL makes use of Kokkos (https://github.com/kokkos/kokkos), HeFFTe (https://github.com/icl-utk-edu/heffte), and MPI (Message Passing Interface) to deliver a portable, massively parallel toolkit for particle-mesh methods. IPPL supports simulations in one to six dimensions, mixed precision, and asynchronous execution in different execution spaces (e.g. CPUs and GPUs)."""
|
||||
|
||||
homepage = "https://github.com/IPPL-framework/ippl"
|
||||
url = "https://github.com/IPPL-framework/ippl/archive/refs/tags/IPPL-3.2.0.tar.gz"
|
||||
|
||||
git="https://github.com/IPPL-framework/ippl.git"
|
||||
|
||||
maintainers("germanne", "gsell")
|
||||
|
||||
license("GPLv3")
|
||||
|
||||
version("3.2.0", sha256="041a4efbddaba5b477dae01ab166354da7dee01cf625706e19f5b60c0c3f6b88")
|
||||
|
||||
version('opalx-fielddump', branch="opalx-fielddump")
|
||||
|
||||
variant(
|
||||
"build_type",
|
||||
default="Release",
|
||||
description="CMake build type",
|
||||
values=("Debug", "Release", "RelWithDebInfo", "MinSizeRel"),
|
||||
)
|
||||
variant("mpi", default=True, description="Enable MPI support")
|
||||
variant(
|
||||
"platforms",
|
||||
default=True,
|
||||
description="Set IPPL platforms",
|
||||
values=("serial", "openmp", "cuda", "openmp/cuda")
|
||||
)
|
||||
variant("solvers", default=True, description="Enable solvers")
|
||||
variant("fft", default=True, description="Enable full-wave solver")
|
||||
variant("tests", default=False, description="Enable tests")
|
||||
variant("unit_tests", default=False, description="Enable unit tests")
|
||||
variant("alternative_variant", default=False, description="Use alternative variant")
|
||||
variant("alpine", default=False, description="Enable Alpine")
|
||||
|
||||
depends_on("cmake@3.25.2:", type="build")
|
||||
depends_on("fftw@3.3.10", when="+fft")
|
||||
depends_on("mpi", when="+mpi")
|
||||
|
||||
conflicts("~mpi", msg="IPPL can not run without mpi!")
|
||||
conflicts("cuda_arch=none", when="+cuda",
|
||||
msg="CUDA architecture is required")
|
||||
conflicts("~cuda", when="platform=cuda",
|
||||
msg="CUDA is required for platform cuda.")
|
||||
|
||||
def cmake_args(self):
|
||||
args = [
|
||||
"-DCMAKE_CXX_STANDARD=20",
|
||||
self.define_from_variant("ENABLE_FFT", "fft"),
|
||||
self.define_from_variant("ENABLE_SOLVERS", "solvers"),
|
||||
self.define_from_variant("ENABLE_TESTS", "tests"),
|
||||
self.define_from_variant("ENABLE_UNIT_TESTS", "unit_tests"),
|
||||
self.define_from_variant("USE_ALTERNATIVE_VARIANT", "alternative_variant"),
|
||||
self.define_from_variant("ENABLE_ALPINE", "alpine"),
|
||||
]
|
||||
|
||||
if 'platforms=cuda' in self.spec:
|
||||
args.append("-DIPPL_PLATFORMS=CUDA")
|
||||
elif 'platforms=openmp' in self.spec:
|
||||
args.append("-DIPPL_PLATFORMS=OPENMP")
|
||||
elif 'platforms=openmp/cuda' in self.spec:
|
||||
args.append("-DIPPL_PLATFORMS=OPENMP;CUDA")
|
||||
else:
|
||||
args.append("-DIPPL_PLATFORMS=SERIAL")
|
||||
|
||||
if 'cuda_arch=90' in self.spec:
|
||||
args.append("-DKokkos_ARCH_HOPPER90=ON")
|
||||
elif 'cuda_arch=80' in self.spec:
|
||||
args.append("-DKokkos_ARCH_AMPERE80=ON")
|
||||
elif 'cuda_arch=60' in self.spec:
|
||||
args.append("-DKokkos_ARCH_PASCAL61=ON")
|
||||
|
||||
return args
|
37
packages/mfem/mfem_conduit_spack.patch
Normal file
37
packages/mfem/mfem_conduit_spack.patch
Normal file
@ -0,0 +1,37 @@
|
||||
diff --git a/config/defaults.mk b/config/defaults.mk
|
||||
index d6b8d59a1..d1ba6fb9a 100644
|
||||
--- a/config/defaults.mk
|
||||
+++ b/config/defaults.mk
|
||||
@@ -452,7 +452,7 @@ FMS_LIB = -Wl,-rpath,$(FMS_DIR)/lib -L$(FMS_DIR)/lib -lfms
|
||||
|
||||
# Conduit and required libraries configuration
|
||||
CONDUIT_DIR = @MFEM_DIR@/../conduit
|
||||
-CONDUIT_OPT = -I$(CONDUIT_DIR)/include/conduit
|
||||
+CONDUIT_OPT = -I$(CONDUIT_DIR)/include
|
||||
CONDUIT_LIB = \
|
||||
$(XLINKER)-rpath,$(CONDUIT_DIR)/lib -L$(CONDUIT_DIR)/lib \
|
||||
-lconduit -lconduit_relay -lconduit_blueprint -ldl
|
||||
@@ -469,8 +469,8 @@ endif
|
||||
# Sidre and required libraries configuration
|
||||
# Be sure to check the HDF5_DIR (set above) is correct
|
||||
SIDRE_DIR = @MFEM_DIR@/../axom
|
||||
-SIDRE_OPT = -I$(SIDRE_DIR)/include -I$(CONDUIT_DIR)/include/conduit\
|
||||
- -I$(HDF5_DIR)/include
|
||||
+SIDRE_OPT = -I$(SIDRE_DIR)/include -I$(CONDUIT_DIR)/include/conduit \
|
||||
+ -I$(CONDUIT_DIR)/include -I$(HDF5_DIR)/include
|
||||
SIDRE_LIB = \
|
||||
$(XLINKER)-rpath,$(SIDRE_DIR)/lib -L$(SIDRE_DIR)/lib \
|
||||
$(XLINKER)-rpath,$(CONDUIT_DIR)/lib -L$(CONDUIT_DIR)/lib \
|
||||
diff --git a/fem/conduitdatacollection.hpp b/fem/conduitdatacollection.hpp
|
||||
index 6ff1804e0..ad0a272a4 100644
|
||||
--- a/fem/conduitdatacollection.hpp
|
||||
+++ b/fem/conduitdatacollection.hpp
|
||||
@@ -17,7 +17,7 @@
|
||||
#ifdef MFEM_USE_CONDUIT
|
||||
|
||||
#include "datacollection.hpp"
|
||||
-#include <conduit.hpp>
|
||||
+#include <conduit/conduit.hpp>
|
||||
|
||||
namespace mfem
|
||||
{
|
@ -6,7 +6,7 @@ diff -u mithra-2.0.orig/makefile mithra-2.0/makefile
|
||||
SHELL = /bin/sh
|
||||
COMP = mpic++
|
||||
|
||||
+CFLAGS+=-fPIC
|
||||
+CFLAGS+=-fPIC -fPIE
|
||||
CFLAGS+=-std=c++11
|
||||
CFLAGS+=-O3
|
||||
|
||||
|
@ -18,6 +18,8 @@ class Mithra(MakefilePackage):
|
||||
|
||||
version("2.0", sha256="66f27ba6ca2c1ab05abb76338d00e661a6fe96b95283b85409c37625b4758deb")
|
||||
|
||||
patch("mithra-fPIC.patch")
|
||||
|
||||
variant("mpi", default=True, description="Enable MPI support")
|
||||
|
||||
depends_on("mpi", when="+mpi")
|
||||
|
112
packages/opal-x/package.py
Normal file
112
packages/opal-x/package.py
Normal file
@ -0,0 +1,112 @@
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
# ----------------------------------------------------------------------------
|
||||
# If you submit this package back to Spack as a pull request,
|
||||
# please first remove this boilerplate and all FIXME comments.
|
||||
#
|
||||
# This is a template package file for Spack. We've put "FIXME"
|
||||
# next to all the things you'll want to change. Once you've handled
|
||||
# them, you can save this file and test your package like this:
|
||||
#
|
||||
# spack install opal-x
|
||||
#
|
||||
# You can edit this file again by typing:
|
||||
#
|
||||
# spack edit opal-x
|
||||
#
|
||||
# See the Spack documentation for more information on packaging.
|
||||
# ----------------------------------------------------------------------------
|
||||
|
||||
from spack.package import *
|
||||
|
||||
|
||||
class OpalX(CMakePackage, CudaPackage):
|
||||
"""OPAL (Object Oriented Parallel Accelerator Library) is a parallel open source tool for charged-particle optics in linear accelerators and rings,
|
||||
including 3D space charge. Using the MAD language with extensions, OPAL can run on a laptop as well as on the largest high performance computing systems.
|
||||
OPAL is built from the ground up as a parallel application exemplifying the fact that high performance computing is the third leg of science,
|
||||
complementing theory and experiment."""
|
||||
|
||||
homepage = "https://amas.web.psi.ch/opal/Documentation/master/OPAL_Manual.html"
|
||||
git = "https://gitlab.psi.ch/OPAL/opal-x/src.git"
|
||||
|
||||
maintainers("germanne", "gsell")
|
||||
|
||||
license("GPLv3")
|
||||
|
||||
version('master', branch="master")
|
||||
version('fixSolverUnits', branch="fixSolverUnits")
|
||||
|
||||
variant(
|
||||
"build_type",
|
||||
default="Release",
|
||||
description="CMake build type",
|
||||
values=("Debug", "Release", "RelWithDebInfo", "MinSizeRel"),
|
||||
)
|
||||
variant("mpi", default=True, description="Enable MPI support")
|
||||
variant("solvers", default=True, description="Enable solvers")
|
||||
variant("fft", default=True, description="Enable full-wave solver")
|
||||
variant("tests", default=False, description="Enable tests")
|
||||
variant("alternative_variant", default=False, description="Use alternative variant")
|
||||
variant("alpine", default=False, description="Enable Alpine")
|
||||
variant("unit_tests", default=False, description="Build unit tests")
|
||||
variant("ippl_git_tag", default="master", description="IPPL git tag")
|
||||
|
||||
depends_on("blas")
|
||||
depends_on("boost@1.82.0+mpi+chrono+filesystem+iostreams+regex+serialization+system+timer+python+shared")
|
||||
depends_on("cmake@3.25.2:", type="build")
|
||||
depends_on("fftw@3.3.10 +mpi")
|
||||
depends_on("gsl@2.7+shared")
|
||||
depends_on("gnutls@3.5.19:")
|
||||
depends_on("cuda@12.4.0:")
|
||||
|
||||
depends_on("h5hut+mpi", when="+mpi")
|
||||
|
||||
depends_on("googletest@1.13.0: +shared", when="+tests")
|
||||
# @master
|
||||
depends_on("h5hut@2.0.0rc6:", when="@master")
|
||||
|
||||
# @2022.1%gcc@10.4.0
|
||||
depends_on("h5hut@2.0.0rc6", when="@2022.1")
|
||||
|
||||
conflicts("~mpi", msg="OPAL can not run without mpi!")
|
||||
conflicts("cuda_arch=none", when="+cuda",
|
||||
msg="CUDA architecture is required")
|
||||
conflicts("%gcc@:8.5.0", msg="gcc bigger than 8.5.0 is required")
|
||||
|
||||
@run_before("cmake")
|
||||
def cmake_configure(self):
|
||||
spec = self.spec
|
||||
cmake_configure = Executable("./gen_OPALrevision")
|
||||
cmake_configure()
|
||||
|
||||
def cmake_args(self):
|
||||
args = [
|
||||
"-DCMAKE_CXX_STANDARD=20",
|
||||
self.define_from_variant("ENABLE_FFT", "fft"),
|
||||
self.define_from_variant("ENABLE_SOLVERS", "solvers"),
|
||||
self.define_from_variant("ENABLE_TESTS", "tests"),
|
||||
self.define_from_variant("USE_ALTERNATIVE_VARIANT", "alternative_variant"),
|
||||
self.define_from_variant("ENABLE_ALPINE", "alpine"),
|
||||
self.define_from_variant("ENABLE_UNIT_TESTS", "unit_tests"),
|
||||
"-DIPPL_GIT_TAG=opalx-fielddump",
|
||||
"-DKokkos_ENABLE_IMPL_CUDA_MALLOC_ASYNC=OFF",
|
||||
]
|
||||
|
||||
if '+cuda' in self.spec:
|
||||
args.append("-DIPPL_PLATFORMS=CUDA")
|
||||
else:
|
||||
args.append("-DIPPL_PLATFORMS=openmp")
|
||||
|
||||
if 'cuda_arch=90' in self.spec:
|
||||
args.append("-DKokkos_ARCH_HOPPER90=ON")
|
||||
elif 'cuda_arch=80' in self.spec:
|
||||
args.append("-DKokkos_ARCH_AMPERE80=ON")
|
||||
elif 'cuda_arch=60' in self.spec:
|
||||
args.append("-DKokkos_ARCH_PASCAL61=ON")
|
||||
|
||||
|
||||
return args
|
||||
|
@ -22,6 +22,7 @@ class Opal(CMakePackage):
|
||||
|
||||
version('master', branch="master")
|
||||
version("2022.1.0", sha256="31f6811032e9d5400169d28a8ae6c7dee2e4a803ee82e90584d31ff7a0a18d80")
|
||||
version("2024.1.0", sha256="65c4c263d6394b4b234323a74fc55eb963fb75cb80ea904d6c82054cfc64033c")
|
||||
|
||||
variant(
|
||||
"build_type",
|
||||
@ -45,12 +46,12 @@ class Opal(CMakePackage):
|
||||
depends_on("blas")
|
||||
depends_on("boost+chrono+filesystem+iostreams+regex+serialization+system+timer")
|
||||
depends_on("boost+mpi", when="+mpi")
|
||||
depends_on("boost+python", when="+python")
|
||||
depends_on("python@3.0", when="+python")
|
||||
depends_on("boost+python+shared", when="+python")
|
||||
depends_on("python@3.0:", when="+python")
|
||||
depends_on(
|
||||
"boost+mpi+chrono+filesystem+iostreams+regex+serialization+system+timer", when="+mpi"
|
||||
)
|
||||
depends_on("gsl~shared")
|
||||
depends_on("gsl+shared")
|
||||
|
||||
depends_on("h5hut+mpi", when="+mpi")
|
||||
depends_on("h5hut~mpi", when="~mpi")
|
||||
@ -59,14 +60,14 @@ class Opal(CMakePackage):
|
||||
"amrex@18.07 precision=double dimensions=3 +mpi~openmp+particles+pic~eb",
|
||||
when="+amr+amr_mg_solver+mpi",
|
||||
)
|
||||
depends_on("googletest@1.10.0:", when="+tests")
|
||||
depends_on("googletest@1.10.0: +shared", when="+tests")
|
||||
depends_on("mithra@2.0", when="+opal_fel")
|
||||
depends_on(
|
||||
"trilinos@12.0.1: cxxstd=17 +mpi+muelu+nox+zoltan+zoltan2+isorropia gotype=long",
|
||||
"trilinos@12.0.1: cxxstd=17 +mpi+muelu+nox+zoltan+zoltan2+isorropia+shared gotype=long",
|
||||
when="+saamg_solver",
|
||||
)
|
||||
depends_on(
|
||||
"trilinos@12.0.1: cxxstd=17 +mpi+muelu+nox+zoltan+zoltan2+isorropia gotype=long",
|
||||
"trilinos@12.0.1: cxxstd=17 +mpi+muelu+nox+zoltan+zoltan2+isorropia+shared gotype=long",
|
||||
when="+amr_mg_solver",
|
||||
)
|
||||
depends_on("parmetis@4.0.3:", when="+saamg_solver")
|
||||
@ -74,8 +75,8 @@ class Opal(CMakePackage):
|
||||
|
||||
# @master
|
||||
depends_on("h5hut@2.0.0rc6", when="@master")
|
||||
depends_on("trilinos@13.4.0:", when="@master+saamg_solver")
|
||||
depends_on("trilinos@13.4.0:", when="@master+amr_mg_solver")
|
||||
depends_on("trilinos@13.4.0: +shared", when="@master+saamg_solver")
|
||||
depends_on("trilinos@13.4.0: +shared", when="@master+amr_mg_solver")
|
||||
|
||||
# @2022.1%gcc@10.4.0
|
||||
depends_on("h5hut@2.0.0rc6", when="@2022.1")
|
||||
@ -83,6 +84,7 @@ class Opal(CMakePackage):
|
||||
depends_on("trilinos@13.4.0", when="@2022.1+amr_mg_solver")
|
||||
|
||||
conflicts("~amr", "+amr_mg_solver")
|
||||
conflicts("~mpi", msg="OPAL can not run without mpi!")
|
||||
|
||||
# AMRex version is too old for any newer Trilinos version
|
||||
requires(
|
||||
@ -105,11 +107,12 @@ class Opal(CMakePackage):
|
||||
self.define_from_variant("ENABLE_AMR", "amr"),
|
||||
self.define_from_variant("ENABLE_AMR_MG_SOLVER", "amr_mg_solver"),
|
||||
self.define_from_variant("ENABLE_BANDRF", "bandrf"),
|
||||
self.define_from_variant("USE_STATIC_LIBRARIES", "static"),
|
||||
self.define_from_variant("ENABLE_OPAL_FEL", "opal_fel"),
|
||||
self.define_from_variant("ENABLE_SAAMG_SOLVER", "saamg_solver"),
|
||||
self.define_from_variant("BUILD_OPAL_PYTHON", "python"),
|
||||
self.define_from_variant("WILL_BUILD_SHARED_LIBRARY", "python"),
|
||||
self.define_from_variant("ENABLE_IPPLTESTS", "ippltests"),
|
||||
self.define_from_variant("ENABLE_MSLANG", "mslang"),
|
||||
]
|
||||
|
||||
return args
|
||||
|
24
packages/relion/package.py
Normal file
24
packages/relion/package.py
Normal file
@ -0,0 +1,24 @@
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
|
||||
from spack.package import *
|
||||
from spack.pkg.builtin.relion import Relion as SpackRelion
|
||||
|
||||
|
||||
class Relion(SpackRelion):
|
||||
version("5.0.0", sha256="800ad0c0aa778cbf584fcf8986976645f2b25d677a80f168e5397975b9db6e47")
|
||||
|
||||
variant("python-exe-path", default="/data/project/bio/hpce/relion-5.0/miniconda3/envs/relion-5.0/bin/python", description="Path to conda env python binary")
|
||||
variant("torch-home-path", default="/data/project/bio/hpce/relion-5.0/torch", description="Path to pretrained model weights")
|
||||
|
||||
def cmake_args(self):
|
||||
args = super().cmake_args()
|
||||
|
||||
if "@5.0.0" in self.spec:
|
||||
args += ["-DPYTHON_EXE_PATH={0}".format(self.spec.variants["python-exe-path"].value)]
|
||||
args += ["-DTORCH_HOME_PATH={0}".format(self.spec.variants["torch-home-path"].value)]
|
||||
|
||||
return args
|
27
packages/slurm/package.py
Normal file
27
packages/slurm/package.py
Normal file
@ -0,0 +1,27 @@
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
import os
|
||||
|
||||
from spack.package import *
|
||||
from spack.pkg.builtin.slurm import Slurm as SpackSlurm
|
||||
|
||||
|
||||
class Slurm(SpackSlurm):
|
||||
|
||||
version("24-05-1-1", sha256="8859d90b29e6c81fdc80a16c9063c1ca58fda4245c3835016124cc044a44daec")
|
||||
version("23-11-8-1", sha256="0e5aba8eb2b6a5b567a3918190a27d8ae3b60ce03acec225ec7ed2584fa450a1")
|
||||
|
||||
variant("cray_shasta", default=False, description="Enable Cray Shasta support")
|
||||
|
||||
def configure_args(self):
|
||||
spec = self.spec
|
||||
|
||||
args=super().configure_args()
|
||||
|
||||
if "+cray_shasta" in spec:
|
||||
args.append("--with-cray_shasta")
|
||||
|
||||
return args
|
14
packages/sratoolkit/package.py
Normal file
14
packages/sratoolkit/package.py
Normal file
@ -0,0 +1,14 @@
|
||||
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
|
||||
# Spack Project Developers. See the top-level COPYRIGHT file for details.
|
||||
#
|
||||
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
|
||||
|
||||
import os
|
||||
|
||||
from spack.package import *
|
||||
from spack.pkg.builtin.sratoolkit import Sratoolkit as SpackSratoolkit
|
||||
|
||||
|
||||
class Sratoolkit(SpackSratoolkit):
|
||||
|
||||
version("3.1.1", sha256="600ff38589c15033c6d0fb4d1d055519e56175ea031b949a2d3f5a74151c6c12")
|
20
templates/user_hierachical_paths.lua
Normal file
20
templates/user_hierachical_paths.lua
Normal file
@ -0,0 +1,20 @@
|
||||
{% extends "modules/modulefile.lua" %}
|
||||
{% block footer %}
|
||||
|
||||
local user_module_root= pathJoin("/afs/psi.ch/sys/spack/user", os.getenv("USER"), "spack-install/modulefiles")
|
||||
|
||||
{% if 'mpi' in provides %}
|
||||
local user_projection= "{{ spec.architecture }}/{{ spec.name }}/{{ version_part }}/{{ spec.compiler.name }}/{{ spec.compiler.version }}"
|
||||
{% elif 'compiler' in provides %}
|
||||
local user_projection= "{{ spec.architecture }}/{{ spec.name }}/{{ spec.version }}"
|
||||
{% endif %}
|
||||
|
||||
|
||||
if user_projection then
|
||||
local user_path= pathJoin(user_module_root, user_projection)
|
||||
if isDir(user_path) then
|
||||
prepend_path("MODULEPATH", user_path, ":")
|
||||
end
|
||||
end
|
||||
|
||||
{% endblock %}
|
Reference in New Issue
Block a user