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- cleanup
This commit is contained in:
gsell
2016-03-29 14:55:35 +02:00
parent 7490eed535
commit ae9e4cee01
18 changed files with 197 additions and 200 deletions
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src/C/Makefile.am
-4
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@@ -2,18 +2,14 @@
if ENABLE_C
# Header files that I wish to install in $(prefix)/include
include_HEADERS = \
$(top_srcdir)/src/include/H5.h \
$(top_srcdir)/src/include/H5Block.h \
$(top_srcdir)/src/include/H5Block_attribs.h \
$(top_srcdir)/src/include/H5Block_io.h \
$(top_srcdir)/src/include/H5Block_model.h \
$(top_srcdir)/src/include/H5Fed.h \
$(top_srcdir)/src/include/H5Fed_adjacency.h \
$(top_srcdir)/src/include/H5Fed_model.h \
$(top_srcdir)/src/include/H5Fed_retrieve.h \
$(top_srcdir)/src/include/H5Fed_store.h \
$(top_srcdir)/src/include/H5Fed_tags.h \
$(top_srcdir)/src/include/H5Part.h \
$(top_srcdir)/src/include/H5Part_io.h \
$(top_srcdir)/src/include/H5Part_model.h \
$(top_srcdir)/src/include/H5_debug.h \
src/include/H5.h
-29
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@@ -1,29 +0,0 @@
/*
Copyright (c) 2006-2016, The Regents of the University of California,
through Lawrence Berkeley National Laboratory (subject to receipt of any
required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
Institut (Switzerland). All rights reserved.
License: see file COPYING in top level of source distribution.
*/
#ifndef __H5_H
#define __H5_H
#ifdef __cplusplus
extern "C" {
#endif
#include "H5_file.h"
#include "H5_model.h"
#include "H5_file_attribs.h"
#include "H5_step_attribs.h"
#include "H5_log.h"
#include "H5_debug.h"
#include "H5_error.h"
#ifdef __cplusplus
}
#endif
#endif
src/include/H5Block_attribs.h
+9
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@@ -22,6 +22,10 @@
@{
*/
#ifdef __cplusplus
extern "C" {
#endif
/*
! __ _ _ _ _ _ _ _ _
! / _(_) ___| | __| | __ _| |_| |_ _ __(_) |__ _ _| |_ ___ ___
@@ -725,5 +729,10 @@ H5Block3dGetFieldZCoords (
f, 2, field_name, H5BLOCK_FIELD_ZCOORD_NAME,
coords, n_coords));
}
#ifdef __cplusplus
}
#endif
///< @}
#endif
src/include/H5Block_io.h
+8
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@@ -20,6 +20,10 @@
@{
*/
#ifdef __cplusplus
extern "C" {
#endif
/**
Write the 3-dimensional field \p name from the buffer pointed to by
\p buffer to the current step using the previously defined field
@@ -427,5 +431,9 @@ H5Block3dReadVector3dFieldInt32 (
x_buf, y_buf, z_buf, H5T_NATIVE_INT32));
}
#ifdef __cplusplus
}
#endif
///< @}
#endif
src/include/H5Block_model.h
+1 -2
View File
@@ -396,10 +396,9 @@ H5BlockGetFieldInfoByName (
type));
}
///< @}
#ifdef __cplusplus
}
#endif
///< @}
#endif
src/include/H5Fed.h
-128
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@@ -1,128 +0,0 @@
/*
Copyright (c) 2006-2016, The Regents of the University of California,
through Lawrence Berkeley National Laboratory (subject to receipt of any
required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
Institut (Switzerland). All rights reserved.
License: see file COPYING in top level of source distribution.
*/
#ifndef __H5FED_H
#define __H5FED_H
#include "H5Fed_adjacency.h"
#include "H5Fed_model.h"
#include "H5Fed_retrieve.h"
#include "H5Fed_store.h"
#include "H5Fed_tags.h"
#ifdef __cplusplus
extern "C" {
#endif
/****** General routines *****************************************************/
static inline h5_err_t
H5FedOpenTetrahedralMesh (
const h5_file_t f,
const char* name,
h5t_mesh_t** mesh
) {
H5_API_ENTER (h5_err_t,
"f=%p, name=%s, mesh=%p",
(h5_file_p)f, name, mesh);
H5_API_RETURN (h5t_open_tetrahedral_mesh (f, name, mesh));
}
static inline h5_err_t
H5FedOpenTetrahedralMeshByIndex (
const h5_file_t f,
const h5_id_t idx,
h5t_mesh_t** mesh
) {
H5_API_ENTER (h5_err_t,
"f=%p, idx=%lld, mesh=%p",
(h5_file_p)f, (long long)idx, mesh);
H5_API_RETURN (h5t_open_tetrahedral_mesh_by_idx (f, idx, mesh));
}
static inline h5_err_t
H5FedOpenTriangleMesh (
const h5_file_t f,
const char* name,
h5t_mesh_t** mesh
) {
H5_API_ENTER (h5_err_t,
"f=%p, name=%s, mesh=%p",
(h5_file_p)f, name, mesh);
H5_API_RETURN (h5t_open_triangle_mesh (f, name, mesh));
}
static inline h5_err_t
H5FedOpenTriangleMeshPart (
const h5_file_t f,
const char* name,
h5t_mesh_t** mesh,
h5_glb_idx_t* const elem_indices,
const h5_glb_idx_t num_elems
) {
H5_API_ENTER (h5_err_t,
"f=%p, name=%s, mesh=%p",
(h5_file_p)f, name, mesh);
H5_API_RETURN (h5t_open_triangle_mesh_part (f, name, mesh, elem_indices, num_elems));
}
static inline h5_err_t
H5FedOpenTriangleMeshByIndex (
const h5_file_t f,
const h5_id_t idx,
h5t_mesh_t** mesh
) {
H5_API_ENTER (h5_err_t,
"f=%p, idx=%lld, mesh=%p",
(h5_file_p)f, (long long)idx, mesh);
H5_API_RETURN (h5t_open_triangle_mesh_by_idx (f, idx, mesh));
}
static inline h5_err_t
H5FedCloseMesh (
h5t_mesh_t* const m
) {
H5_API_ENTER (h5_err_t, "m=%p", m);
H5_API_RETURN (h5t_close_mesh (m));
}
static inline h5_err_t
H5FedSetLevel (
h5t_mesh_t* const m,
const h5_lvl_idx_t level_id
) {
H5_API_ENTER (h5_err_t, "m=%p, level_id=%d", m, level_id);
H5_API_RETURN (h5t_set_level (m, level_id));
}
static inline h5_err_t
H5FedSetMeshChanged (
h5t_mesh_t* const m
) {
H5_API_ENTER (h5_err_t, "m=%p", m);
H5_API_RETURN (h5t_set_mesh_changed (m));
}
#ifdef __cplusplus
}
#endif
#endif
src/include/H5Fed_model.h
+87
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@@ -157,6 +157,93 @@ H5FedGetNumElementsTotal (
H5_API_RETURN (h5t_get_num_leaf_elems (m, -1));
}
static inline h5_err_t
H5FedOpenTetrahedralMesh (
const h5_file_t f,
const char* name,
h5t_mesh_t** mesh
) {
H5_API_ENTER (h5_err_t,
"f=%p, name=%s, mesh=%p",
(h5_file_p)f, name, mesh);
H5_API_RETURN (h5t_open_tetrahedral_mesh (f, name, mesh));
}
static inline h5_err_t
H5FedOpenTetrahedralMeshByIndex (
const h5_file_t f,
const h5_id_t idx,
h5t_mesh_t** mesh
) {
H5_API_ENTER (h5_err_t,
"f=%p, idx=%lld, mesh=%p",
(h5_file_p)f, (long long)idx, mesh);
H5_API_RETURN (h5t_open_tetrahedral_mesh_by_idx (f, idx, mesh));
}
static inline h5_err_t
H5FedOpenTriangleMesh (
const h5_file_t f,
const char* name,
h5t_mesh_t** mesh
) {
H5_API_ENTER (h5_err_t,
"f=%p, name=%s, mesh=%p",
(h5_file_p)f, name, mesh);
H5_API_RETURN (h5t_open_triangle_mesh (f, name, mesh));
}
static inline h5_err_t
H5FedOpenTriangleMeshPart (
const h5_file_t f,
const char* name,
h5t_mesh_t** mesh,
h5_glb_idx_t* const elem_indices,
const h5_glb_idx_t num_elems
) {
H5_API_ENTER (h5_err_t,
"f=%p, name=%s, mesh=%p",
(h5_file_p)f, name, mesh);
H5_API_RETURN (h5t_open_triangle_mesh_part (f, name, mesh, elem_indices, num_elems));
}
static inline h5_err_t
H5FedOpenTriangleMeshByIndex (
const h5_file_t f,
const h5_id_t idx,
h5t_mesh_t** mesh
) {
H5_API_ENTER (h5_err_t,
"f=%p, idx=%lld, mesh=%p",
(h5_file_p)f, (long long)idx, mesh);
H5_API_RETURN (h5t_open_triangle_mesh_by_idx (f, idx, mesh));
}
static inline h5_err_t
H5FedCloseMesh (
h5t_mesh_t* const m
) {
H5_API_ENTER (h5_err_t, "m=%p", m);
H5_API_RETURN (h5t_close_mesh (m));
}
static inline h5_err_t
H5FedSetLevel (
h5t_mesh_t* const m,
const h5_lvl_idx_t level_id
) {
H5_API_ENTER (h5_err_t, "m=%p, level_id=%d", m, level_id);
H5_API_RETURN (h5t_set_level (m, level_id));
}
static inline h5_err_t
H5FedSetMeshChanged (
h5t_mesh_t* const m
) {
H5_API_ENTER (h5_err_t, "m=%p", m);
H5_API_RETURN (h5t_set_mesh_changed (m));
}
#ifdef __cplusplus
}
#endif
src/include/H5Part.h
-16
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@@ -1,16 +0,0 @@
/*
Copyright (c) 2006-2016, The Regents of the University of California,
through Lawrence Berkeley National Laboratory (subject to receipt of any
required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
Institut (Switzerland). All rights reserved.
License: see file COPYING in top level of source distribution.
*/
#ifndef __H5PART_H
#define __H5PART_H
#include "H5Part_io.h"
#include "H5Part_model.h"
#endif
src/include/H5Part_io.h
-1
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@@ -206,5 +206,4 @@ H5PartReadDataInt32 (
#endif
///< @}
#endif
src/include/H5Part_model.h
-1
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@@ -410,5 +410,4 @@ H5PartSetCanonicalView (
#endif
///< @}
#endif
src/include/H5_debug.h
+9 -2
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@@ -17,6 +17,10 @@
@{
*/
#ifdef __cplusplus
extern "C" {
#endif
/**
Set debug mask. The debug mask is an or'ed value of
@@ -64,6 +68,9 @@ H5GetDebugMask (
return (h5_get_debuglevel () & ~0x03);
}
///< @}
#ifdef __cplusplus
}
#endif
///< @}
#endif
src/include/H5_error.h
+10 -3
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@@ -18,7 +18,11 @@
\addtogroup h5_error
@{
*/
#ifdef __cplusplus
extern "C" {
#endif
/**
Report error, do not abort program. The error must be handled in the programm.
@@ -144,6 +148,9 @@ H5GetErrno (
return h5_get_errno ();
}
///< @}
#ifdef __cplusplus
}
#endif
///< @}
#endif
src/include/H5_file.h
+9 -2
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@@ -19,6 +19,10 @@
@{
*/
#ifdef __cplusplus
extern "C" {
#endif
#if H5HUT_API_VERSION == 2
#define H5OpenFile2 H5OpenFile
#elif H5HUT_API_VERSION == 1
@@ -397,6 +401,9 @@ H5Finalize (
H5_API_RETURN (h5_close_hdf5 ());
}
///< @}
#ifdef __cplusplus
}
#endif
///< @}
#endif
src/include/H5_file_attribs.h
+9 -1
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@@ -22,6 +22,10 @@
@{
*/
#ifdef __cplusplus
extern "C" {
#endif
/*
__ _ _ _ _ _ _ _
/ _(_) | ___ __ _| |_| |_ _ __(_) |__ _ _| |_ ___ ___
@@ -371,6 +375,10 @@ H5ReadFileAttribInt32 (
H5_INT32_T,
(void*)buffer));
}
///< @}
#ifdef __cplusplus
}
#endif
///< @}
#endif
src/include/H5_log.h
+9 -2
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@@ -24,6 +24,10 @@
@{
*/
#ifdef __cplusplus
extern "C" {
#endif
/**
Set verbosity level to \c level.
@@ -87,7 +91,10 @@ H5GetVerbosityLevel (
return h5_get_debuglevel () & 0x03;
}
///< @}
#ifdef __cplusplus
}
#endif
///< @}
#endif
src/include/H5_model.h
+1 -2
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@@ -289,13 +289,12 @@ H5DeleteAttachment (
H5_API_ENTER (h5_err_t, "fname='%s'", fname);
H5_API_RETURN (h5_delete_attachment (f, fname));
}
#ifdef __cplusplus
}
#endif
///< @}
#endif
src/include/H5_step_attribs.h
+5 -3
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@@ -17,12 +17,15 @@
#include "h5core/h5_debug.h"
#include "h5core/h5_attribs.h"
/**
\addtogroup h5_step_attribs
@{
*/
#ifdef __cplusplus
extern "C" {
#endif
/*
_ _ _ _ _ _
___| |_ ___ _ __ __ _| |_| |_ _ __(_) |__ _ _| |_ ___ ___
@@ -376,10 +379,9 @@ H5ReadStepAttribInt32 (
(void*)buffer));
}
///< @}
#ifdef __cplusplus
}
#endif
///< @}
#endif
src/include/H5hut.h
+40 -4
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@@ -14,9 +14,45 @@
#define H5HUT_API_VERSION 2
#endif
#include "H5.h"
#include "H5Part.h"
#include "H5Block.h"
#include "H5Fed.h"
#include "H5_file.h"
#include "H5_model.h"
#include "H5_file_attribs.h"
#include "H5_step_attribs.h"
#include "H5_log.h"
#include "H5_debug.h"
#include "H5_error.h"
#include "H5Part_io.h"
#include "H5Part_model.h"
/**
\ingroup h5block_model
\note
Different field sizes are allowed in the same time-step.
\note
The same layout can be used, if the size of the field matches the
size of the layout. If the size of the layout doesn't match the
size of the field, an error will be indicated.
\note In write mode views might be reduced to make them
non-overlaping, i.e. ghost-zones are eliminated. This may shrink
views in an unexpected way.
\todo
check whether layout is reasonable
*/
#include "H5Block_attribs.h"
#include "H5Block_model.h"
#include "H5Block_io.h"
#include "H5Fed_adjacency.h"
#include "H5Fed_model.h"
#include "H5Fed_retrieve.h"
#include "H5Fed_store.h"
#include "H5Fed_tags.h"
#endif