Corrected version number

New tag with updates on H5Block.
Prepare new tag with updates on H5Block.
2007-08-29 02:31:57 +00:00 · 2007-08-29 01:35:49 +00:00 · 2007-08-29 01:26:50 +00:00 · 2007-07-12 09:50:42 +00:00 · 2007-07-12 09:15:21 +00:00 · 2007-07-11 15:34:15 +00:00
769 changed files with 72560 additions and 241859 deletions
@@ -1,583 +1,177 @@
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-src/include/h5core/h5t_model.h -text
-src/include/h5core/h5t_octree.h -text
-src/include/h5core/h5t_retrieve.h -text
-src/include/h5core/h5t_store.h -text
-src/include/h5core/h5t_tags.h -text
-src/include/h5core/h5u_io.h -text
-src/include/h5core/h5u_model.h -text
+src/TestUnderscore.f -text
+src/TestUnderscoreC.c -text
+test/Bench.c -text
+test/BlockTestSpecs.txt -text
+test/H5BlockDissolveGhosts.c -text
+test/H5BlockParTestScalarField.c -text
+test/H5BlockParTestScalarField.pbs -text
+test/H5BlockParTestScalarFieldF.f90 -text
+test/H5BlockTestAttributes.c -text
+test/H5BlockTestAttributesF.f90 -text
+test/H5ParallelTest.cc -text
+test/H5PartAndreasTest.cc -text
+test/H5PartTest.cc -text
+test/H5PartTestParallel.cc -text
+test/H5test.cc -text
+test/H5testF.f -text
+test/H5testFpar.f90 -text
 test/Makefile.am -text
-test/h5b_read.c -text
-test/h5b_test.c -text
-test/h5b_write.c -text
-test/h5u_read.c -text
-test/h5u_test.c -text
-test/h5u_write.c -text
-test/params.h -text
-test/testframe.c -text
-test/testframe.h -text
-tools/H5PartMerge/AUTHORS -text
-tools/H5PartMerge/COPYING -text
-tools/H5PartMerge/ChangeLog -text
-tools/H5PartMerge/INSTALL -text
-tools/H5PartMerge/NEWS -text
-tools/H5PartMerge/README -text
-tools/H5PartMerge/autogen.sh -text
-tools/H5PartMerge/configure.ac -text
-tools/H5PartMerge/makefile.am -text
-tools/H5PartMerge/src/H5merge.cpp -text
-tools/H5PartMerge/src/optparse.cpp -text
-tools/H5PartMerge/src/optparse.hh -text
 tools/Makefile.am -text
 tools/README -text
-tools/h5PartDcToVtk.cc -text
-tools/h5PartSurfaceToVtk.cc -text
-tools/h5hutcc.in -text
 tools/h5pAttrib.cc -text
 tools/h5pToGNUplot.cc -text
-tools/vtk2h5grid/Makefile.am -text
-tools/vtk2h5grid/vtk2h5grid.cc -text
+tools/homdynToH5p.cc -text
+trunk/AUTHORS -text
+trunk/COPYRIGHT -text
+trunk/ChangeLog -text
+trunk/GNUmakefile.orig -text
+trunk/Makefile.am -text
+trunk/Makefile.orig -text
+trunk/NEWS -text
+trunk/README -text
+trunk/autogen.sh -text
+trunk/config.guess -text
+trunk/config.h.in -text
+trunk/config.sub -text
+trunk/configure.ac -text
+trunk/depcomp -text
+trunk/doc/Doxyfile -text
+trunk/doc/H5X_File_Format.txt -text
+trunk/doc/Makefile.am -text
+trunk/doc/doxyfooter -text
+trunk/install-sh -text
+trunk/license.txt -text
+trunk/missing -text
+trunk/rules.make -text
+trunk/src/H5Block.c -text
+trunk/src/H5Block.h -text
+trunk/src/H5BlockErrors.h -text
+trunk/src/H5BlockF.c -text
+trunk/src/H5BlockF90.inc -text
+trunk/src/H5BlockPrivate.h -text
+trunk/src/H5BlockTypes.h -text
+trunk/src/H5Part.c -text
+trunk/src/H5Part.h -text
+trunk/src/H5PartErrors.h -text
+trunk/src/H5PartF.c -text
+trunk/src/H5PartF90.inc -text
+trunk/src/H5PartPrivate.h -text
+trunk/src/H5PartTypes.h -text
+trunk/src/Makefile.am -text
+trunk/src/TestUnderscore.f -text
+trunk/src/TestUnderscoreC.c -text
+trunk/test/Bench.c -text
+trunk/test/BlockTestSpecs.txt -text
+trunk/test/H5BlockDissolveGhosts.c -text
+trunk/test/H5BlockParTestScalarField.c -text
+trunk/test/H5BlockParTestScalarField.pbs -text
+trunk/test/H5BlockParTestScalarFieldF.f90 -text
+trunk/test/H5BlockTestAttributes.c -text
+trunk/test/H5BlockTestAttributesF.f90 -text
+trunk/test/H5ParallelTest.cc -text
+trunk/test/H5PartAndreasTest.cc -text
+trunk/test/H5PartTest.cc -text
+trunk/test/H5PartTestParallel.cc -text
+trunk/test/H5test.cc -text
+trunk/test/H5testF.f -text
+trunk/test/H5testFpar.f90 -text
+trunk/test/Makefile.am -text
+trunk/tools/Makefile.am -text
+trunk/tools/README -text
+trunk/tools/h5pAttrib.cc -text
+trunk/tools/h5pToGNUplot.cc -text
+trunk/tools/homdynToH5p.cc -text
+trunk/visit_plugins/databases/H5Part/.depend -text
+trunk/visit_plugins/databases/H5Part/Makefile -text
+trunk/visit_plugins/databases/H5Part/README.txt -text
+trunk/visit_plugins/databases/H5Part/avth5partFileFormat.C -text
+trunk/visit_plugins/databases/H5Part/avth5partFileFormat.h -text
+trunk/visit_plugins/databases/H5Part/h5part.xml -text
+trunk/visit_plugins/databases/H5Part/h5partCommonPluginInfo.C -text
+trunk/visit_plugins/databases/H5Part/h5partEnginePluginInfo.C -text
+trunk/visit_plugins/databases/H5Part/h5partMDServerPluginInfo.C -text
+trunk/visit_plugins/databases/H5Part/h5partPluginInfo.C -text
+trunk/visit_plugins/databases/H5Part/h5partPluginInfo.h -text
+trunk/visit_plugins/operators/BinnerFilter/.depend -text
+trunk/visit_plugins/operators/BinnerFilter/Binner.xml -text
+trunk/visit_plugins/operators/BinnerFilter/BinnerCommonPluginInfo.C -text
+trunk/visit_plugins/operators/BinnerFilter/BinnerEnginePluginInfo.C -text
+trunk/visit_plugins/operators/BinnerFilter/BinnerFilter.C -text
+trunk/visit_plugins/operators/BinnerFilter/BinnerFilter.h -text
+trunk/visit_plugins/operators/BinnerFilter/BinnerFilter.java -text
+trunk/visit_plugins/operators/BinnerFilter/BinnerGUIPluginInfo.C -text
+trunk/visit_plugins/operators/BinnerFilter/BinnerMakefile -text
+trunk/visit_plugins/operators/BinnerFilter/BinnerPluginInfo.C -text
+trunk/visit_plugins/operators/BinnerFilter/BinnerPluginInfo.h -text
+trunk/visit_plugins/operators/BinnerFilter/BinnerScriptingPluginInfo.C -text
+trunk/visit_plugins/operators/BinnerFilter/BinnerViewerPluginInfo.C -text
+trunk/visit_plugins/operators/BinnerFilter/Binnerreplace.txt -text
+trunk/visit_plugins/operators/BinnerFilter/Makefile -text
+trunk/visit_plugins/operators/BinnerFilter/PyBinner.C -text
+trunk/visit_plugins/operators/BinnerFilter/PyBinner.h -text
+trunk/visit_plugins/operators/BinnerFilter/QvisBinnerWindow.C -text
+trunk/visit_plugins/operators/BinnerFilter/QvisBinnerWindow.h -text
+trunk/visit_plugins/operators/BinnerFilter/avtBinnerFilter.C -text
+trunk/visit_plugins/operators/BinnerFilter/avtBinnerFilter.h -text
+trunk/visit_plugins/operators/BinnerFilter/icon.xpm -text
+trunk/visit_plugins/operators/RandomSample/.depend -text
+trunk/visit_plugins/operators/RandomSample/H5PartRandomSampleAttributes.C -text
+trunk/visit_plugins/operators/RandomSample/H5PartRandomSampleAttributes.h -text
+trunk/visit_plugins/operators/RandomSample/H5PartRandomSampleAttributes.java -text
+trunk/visit_plugins/operators/RandomSample/H5PartRandomSampleCommonPluginInfo.C -text
+trunk/visit_plugins/operators/RandomSample/H5PartRandomSampleEnginePluginInfo.C -text
+trunk/visit_plugins/operators/RandomSample/H5PartRandomSampleGUIPluginInfo.C -text
+trunk/visit_plugins/operators/RandomSample/H5PartRandomSamplePluginInfo.C -text
+trunk/visit_plugins/operators/RandomSample/H5PartRandomSamplePluginInfo.h -text
+trunk/visit_plugins/operators/RandomSample/H5PartRandomSampleScriptingPluginInfo.C -text
+trunk/visit_plugins/operators/RandomSample/H5PartRandomSampleViewerPluginInfo.C -text
+trunk/visit_plugins/operators/RandomSample/Makefile -text
+trunk/visit_plugins/operators/RandomSample/PyH5PartRandomSampleAttributes.C -text
+trunk/visit_plugins/operators/RandomSample/PyH5PartRandomSampleAttributes.h -text
+trunk/visit_plugins/operators/RandomSample/QvisH5PartRandomSampleWindow.C -text
+trunk/visit_plugins/operators/RandomSample/QvisH5PartRandomSampleWindow.h -text
+trunk/visit_plugins/operators/RandomSample/RandomSample.xml -text
+trunk/visit_plugins/operators/RandomSample/avtH5PartRandomSampleFilter.C -text
+trunk/visit_plugins/operators/RandomSample/avtH5PartRandomSampleFilter.h -text
+trunk/visit_plugins/operators/RandomSample/icon.xpm -text
 visit_plugins/databases/H5Part/.depend -text
 visit_plugins/databases/H5Part/Makefile -text
 visit_plugins/databases/H5Part/README.txt -text
@@ -1,99 +0,0 @@
-*.tar.gz
-*.[oa]
-*.la
-*.lo
-*.so
-*.dSYM
-*~
-.deps
-.dirstamp
-.libs
-Makefile
-Makefile.in
-aclocal.m4
-attach_field_attributes
-dump_field_attributes
-autom4te.cache/
-compile
-config.guess
-config.h
-config.h.in
-config.log
-config.status
-config.sub
-configure
-depcomp
-examples/H5/attach_file
-examples/H5/example_file_attribs.h5
-examples/H5/example_step_attribs.h5
-examples/H5/examples.h
-examples/H5/h5hut.mod
-examples/H5/openclose
-examples/H5/openclosef
-examples/H5/query
-examples/H5/queryf
-examples/H5/read_file_attribs
-examples/H5/read_file_attribsf
-examples/H5/read_step_attribs
-examples/H5/read_step_attribsf
-examples/H5/write_file_attribs
-examples/H5/write_file_attribsf
-examples/H5/write_step_attribs
-examples/H5/write_step_attribsf
-examples/H5Block/H5BlockExampleF
-examples/H5Block/*.h5
-examples/H5Block/fields
-examples/H5Block/read_write
-examples/H5Part/Bench
-examples/H5Part/H5test
-examples/H5Part/H5testF
-examples/H5Part/core_vfd
-examples/H5Part/*.h5
-examples/H5Part/examples.h
-examples/H5Part/h5hut.mod
-examples/H5Part/particles
-examples/H5Part/read_canonicalview
-examples/H5Part/read_setnparticles
-examples/H5Part/read_setview
-examples/H5Part/read_strided
-examples/H5Part/write_core_vfd
-examples/H5Part/write_setnparticles
-examples/H5Part/write_setnumparticles
-examples/H5Part/write_setview
-examples/H5Part/write_setviewf
-examples/H5Part/write_strided
-has_field
-install-sh
-libtool
-ltmain.sh
-m4/
-missing
-src/Fortran/TestUnderscore
-src/Fortran/Underscore.h
-src/include/H5hut.f
-src/include/H5hutF.h
-stamp-h1
-test/h5b_test
-test/h5u_test
-test/h5_attach_test
-test/test.h5
-tools/h5hutcc
-large_tet.h5
-simple_tet.h5
-simple_triangle.h5
-tetmesh_adjacencies
-tetmesh_read
-tetmesh_read_tags
-tetmesh_write
-tetmesh_write1
-examples/H5Fed/tetmesh_write2
-examples/H5Fed/trimesh_2gnuplot
-examples/H5Fed/trimesh_adjacencies
-examples/H5Fed/trimesh_read
-examples/H5Fed/trimesh_write
-examples/H5Fed/trimesh_write_dunetest
-tetmesh_write_tags
-write_field
-*.gch
-ReferencePages
-vtk2h5grid
@@ -7,4 +7,4 @@ Wes Bethel (NERSC/LBNL)
 John Shalf (NERSC/LBNL)
 Cristina Siegerist (NERSC/LBNL)

-Please use h5part@lists.psi.ch for communication.
+Please use h5part@lists.psi.ch for communicaion.
@@ -1,71 +0,0 @@
-*** Copyright Notice ***
-
-H5hut  Copyright (c) 2006-2016, The Regents of the University of California,
-through Lawrence Berkeley National Laboratory (subject to receipt of any
-required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
-Institut (Switzerland).  All rights reserved.
-
-If you have questions about your rights to use or distribute this
-software, please contact Berkeley Lab's Technology Transfer Department
-at  TTD@lbl.gov referring to "H5Part (LBNL Ref CR-2255)"
-
-NOTICE.  This software was developed under partial funding from the U.S.
-Department of Energy.  As such, the U.S. Government has been granted for
-itself and others acting on its behalf a paid-up, nonexclusive,
-irrevocable, worldwide license in the Software to reproduce, prepare
-derivative works, and perform publicly and display publicly.  Beginning
-five (5) years after the date permission to assert copyright is obtained
-from the U.S. Department of Energy, and subject to any subsequent five
-(5) year renewals, the U.S. Government is granted for itself and others
-acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide
-license in the Software to reproduce, prepare derivative works,
-distribute copies to the public, perform publicly and display publicly,
-and to permit others to do so.
-
-
-*** License agreement ***
-
-H5hut  Copyright (c) 2006-2016, The Regents of the University of California,
-through Lawrence Berkeley National Laboratory (subject to receipt of any
-required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
-Institut (Switzerland).  All rights reserved.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-(1) Redistributions of source code must retain the above copyright
-notice, this list of conditions and the following disclaimer.
-
-(2) Redistributions in binary form must reproduce the above copyright
-notice, this list of conditions and the following disclaimer in the
-documentation and/or other materials provided with the distribution.
-
-(3) Neither the name of the University of California, Lawrence Berkeley
-National Laboratory, U.S. Dept. of Energy, Paul Scherrer Institut
-(Switzerland) nor the names of its contributors may be used to endorse
-or promote products derived from this software without specific prior
-written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
-IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
-TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
-PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER
-OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
-EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
-PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
-LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
-NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-You are under no obligation whatsoever to provide any bug fixes,
-patches, or upgrades to the features, functionality or performance of
-the source code ("Enhancements") to anyone; however, if you choose to
-make your Enhancements available either publicly, or directly to
-Lawrence Berkeley National Laboratory, without imposing a separate
-written license agreement for such Enhancements, then you hereby grant
-the following license: a  non-exclusive, royalty-free perpetual license
-to install, use, modify, prepare derivative works, incorporate into
-other computer software, distribute, and sublicense such enhancements or
-derivative works thereof, in binary and source code form.
-
@@ -0,0 +1,7 @@
+*** Copyright Notice ***
+
+H5Part  Copyright (c) 2006, The Regents of the University of California, through Lawrence Berkeley National Laboratory (subject to receipt of any required approvals from the U.S. Dept. of Energy) and the Paul Scherrer Institut (Switzerland).  All rights reserved.
+
+If you have questions about your rights to use or distribute this software, please contact Berkeley Lab's Technology Transfer Department at  TTD@lbl.gov referring to "H5Part (LBNL Ref CR-2255)"
+
+NOTICE.  This software was developed under partial funding from the U.S. Department of Energy.  As such, the U.S. Government has been granted for itself and others acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide license in the Software to reproduce, prepare derivative works, and perform publicly and display publicly.  Beginning five (5) years after the date permission to assert copyright is obtained from the U.S. Department of Energy, and subject to any subsequent five (5) year renewals, the U.S. Government is granted for itself and others acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide license in the Software to reproduce, prepare derivative works, distribute copies to the public, perform publicly and display publicly, and to permit others to do so.
@@ -0,0 +1,133 @@
+UNAME := $(shell uname | perl -pe 's/(sn\d\d\d\d|jsimpson)/UNICOS\/mk/')
+# for host specific options
+HOST := $(shell hostname)
+
+# for processor-specific options
+ifeq ($(UNAME), Linux)
+PROC := $(shell uname -p)
+endif
+
+CXX = c++
+CC = cc
+H5HOME = /usr/local/hdf5
+CFLAGS = -g -I$(H5HOME)/include
+LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
+
+# MacOS-X Serial
+ifeq ($(UNAME), Darwin)
+ifeq ($(PARALLEL), yes)
+CXX = g++
+CC = mpicc
+H5HOME = /usr/local
+CFLAGS = -O -g -I$(H5HOME)/include -DPARALLEL_IO
+LDFLAGS = -L$(H5HOME)/lib -lmpich -lpmpich -lhdf5 -lz -lm
+else
+CXX = c++
+CC = cc
+F90 = xlf
+H5HOME = /usr/local
+CFLAGS = -O -g -I$(H5HOME)/include
+LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
+endif
+endif
+
+# SGI MIPS/Irix
+ifeq ($(UNAME), IRIX64)
+CXX = CC
+CC = cc
+F90 = f90
+ifeq ($(PARALLEL), yes)
+H5HOME = $(HDF5_DIR)
+CFLAGS = -64 -O3 -I$(H5HOME)/include -DPARALLEL_IO
+LDFLAGS = -64 -O3 -L$(H5HOME)/lib -lhdf5 -lz -lmpi -lm
+else
+H5HOME = /usr/local
+CFLAGS = -O3 -I$(H5HOME)/include
+LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
+endif
+endif
+
+# AIX/SP-2 Parallel/serial : Seaborg
+ifeq ($(UNAME), AIX)
+ifeq ($(PARALLEL), yes) # parallel
+CXX = mpCC_r
+CC = mpxlc_r
+# H5HOME = /usr/common/usg/hdf5_64/1.4.5-post2/parallel
+H5HOME = /usr/common/usg/hdf5_64/1.6.1/parallel
+# /usr/common/usg/hdf5/1.4.4/parallel
+H4HOME = /usr/common/usg/hdf/default
+OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
+CFLAGS = -q64 -I$(H5HOME)/include
+LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lsz -lm
+else # serial
+CXX = xlC
+CC = xlc
+H5HOME = /usr/common/usg/hdf5/1.4.4/serial
+H4HOME = /usr/common/usg/hdf/default
+OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
+CFLAGS = -g -bmaxdata:800000000  -bmaxstack:256000000 -I$(H5HOME)/include
+LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lm
+endif
+endif
+
+# Linux
+ifeq ($(UNAME), Linux)
+# if this machine is NERSC/Davinci Altix system
+ifeq ($(PROC), ia64)
+CC = icc 
+CXX = icc
+
+ifeq ($(PARALLEL), yes)
+# IA64 Linux Parallel
+ifeq ($(HOST), davinci)
+H5HOME = $(HDF5_PAR)
+MPILIB = -lmpi
+else
+H5HOME = /usr/local
+HDF5_PAR_LIB = -L$(H5HOME)/lib -lhdf5 -lz -lm
+HDF5_PAR_INCLUDE = -I$(H5HOME)/include
+MPIHOME = /usr/local
+MPILIB = -lmpich
+endif # HOST
+CFLAGS = -O3 -DPARALLEL_IO -DH5_HAVE_PARALLEL $(HDF5_PAR_INCLUDE) 
+LDFLAGS = $(HDF5_PAR_LIB) $(MPILIB)
+else # IA64 Linux Serial
+CFLAGS = -O3 $(HDF5_INCLUDE)
+LDFLAGS = $(HDF5_LIB) -lm
+endif # PARALLEL
+
+# else this is standard IA32 linux
+else
+ifeq ($(PARALLEL), yes)
+# Linux Parallel
+CC = gcc
+CXX = g++
+H5HOME = /usr/local
+MPIHOME = /usr/local
+CFLAGS = -O -g -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include 
+LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lmpich -lrt -lz -lm
+else # Linux Serial
+CXX = g++
+CC = gcc
+CFLAGS = -O -g -I$(H5HOME)/include
+LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
+endif # !PARALLEL
+endif # PROC!ia64
+
+endif # !Linux
+
+ifeq ($(PARALLEL), yes) #parallel
+ifdef F90
+all: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest H5PartF.o
+else
+all: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest
+endif
+else
+ifdef F90
+all: H5PartTest H5PartTest.o H5Part.o H5PartF.o
+else
+all: H5PartTest H5PartTest.o H5Part.o
+endif
+endif
+
+include rules.make
@@ -1,19 +1,15 @@
-ACLOCAL_AMFLAGS = -I m4
-EXTRA_DIST = autogen.sh
+# Trial by Antino Kim
+# Top level Makefile.am

-SUBDIRS =			\
-	src			\
-	test			\
-	tools			\
-	doc			\
-	examples/H5		\
-	examples/H5Part	 	\
-	examples/H5Block	\
-	examples/H5Fed
+SUBDIRS = \
+	doc \
+	src \
+	test \
+	tools

-MAINTAINERCLEANFILES = 		\
-	config.h 		\
-	config.log 		\
-	config.status 		\
-	stamp-h.in 		\
+MAINTAINERCLEANFILES = \
+	config.h \
+	config.log \
+	config.status \
+	stamp-h.in \
 	stamp-h1
@@ -0,0 +1,59 @@
+
+# This is a very rudimentary multiarchitecture makefile
+# You need to uncomment the default block of make variables you need
+# Some key things to watch for are the following defines
+#	-DREGRESSIONTEST : enables a main(){} inside of
+#		the H5Part.cc file that does simple regression testing.
+#	-DPARALLEL_IO : If you want to use parallel HDF5, you have to 
+#		enable this.  Otherwise, you get only the serial 
+#		implementation of the library.  
+
+# MacOS-X Serial
+#CXX = c++
+#CC = cc
+#F90 = xlf
+#H5HOME = /usr/local
+#CFLAGS = -O -g -I$(H5HOME)/include
+#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
+
+# AIX/SP-2 Parallel : Seaborg
+#CXX = mpCC_r
+#CC = mpcc_r
+#F90 = mpxlf
+#H5HOME = /usr/common/usg/hdf5/1.4.4/parallel
+#H4HOME = /usr/common/usg/hdf/default
+#OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
+#CFLAGS = -g -bmaxdata:800000000  -bmaxstack:256000000 -I$(H5HOME)/include
+#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lm
+
+# Linux Serial
+#CXX = g++
+#CC = gcc
+#F90 = g77  # or could be pgif90
+#CFLAGS = -O -g -I$(H5HOME)/include
+#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
+
+# Linux Jacquard
+CC = mpicc
+CXX = mpicxx
+F90 = mpif90
+H5HOME = /usr/common/usg/hdf5/1.6.3/parallel
+CFLAGS = -O2 -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
+LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
+
+# Linux Parallel
+#CC = gcc
+#CXX = g++
+#F90 = g77
+#H5HOME = /usr/local
+# /usr/common/usg/hdf5/1.6.3/parallel
+#MPIHOME = /usr/local
+#CFLAGS = -O -g -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include 
+#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lmpich -lrt -lz -lm
+
+all: H5PartTest H5PartTest.o H5Part.o
+parallel: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest # parallel regression tests
+fortran: H5PartF.o # fortran bindings
+
+include rules.make
+
@@ -1,257 +1,3 @@
-#### H5PART trunk ############################################################
-
-* h5_file_t is now uintptr_t
-* experimental version of parallel H5Fed
-* new API function for file open using properties (similiar to hdf5 properties)
-
-#### H5PART 1.99.10 ############################################################
-
-* C99 compiler required
-* C API with inline functions
-
-
-#### H5PART 1.99.0 ############################################################
-
-rudimental implementation of a grid manager
-
-Important changes from version 1.6 to 1.99.0
-
-Renamed type:
-    H5PartFile -> h5_file_t
-    h5part_int64_t -> h5_int64_t
-    h5part_float64_t -> h5_float_t
-
-Renamed functions:
-    All function not related to a specific data model have been renamed from
-    H5PartFunction() to H5Function().
-
-    Example:
-       H5PartOpenFile() -> H5OpenFile()
-
-Removed functions:
-    To simplify the API, there is just one function to open a file. It's the
-    same function for serial and parallel code.
-
-#### H5PART 1.6.6 ############################################################
-
-Fixed typo (Write instead of Read) in the h5bl_3d_read_scalar_field* Fortran
-interface.
-
-Added missing type normalization for int32 type.
-
-Rewrite of h5pAttrib tool.
-
-#### H5PART 1.6.5 ############################################################
-
-Fixed several build errors reported by Iuri Prilepov on Ubuntu 11.04.
-
-#### H5PART 1.6.4 ############################################################
-
-Fixed bug where H5PartSetViewIndices was not setting an empty view when the
-number of elements is 0.
-
-Set a threshold on the HDF5 alignment parameter so that small metadata writes
-are not aligned, which causes large gaps in the file.
-
-#### H5PART 1.6.3 ############################################################
-
-New build system uses libtool and can build shared libraries.
-
-Fixed a bug that incorrectly identifies the number of selected points in a view
-when using H5PartSetViewIndices.
-
-Fixed bug in Fortran test reported by several people, as well as several
-incorrect views set in the C test that were causing segfaults.
-
-Fixed name mismatches in the Fortran interface, and an off-by-one indexing
-problem.
-
-#### H5PART 1.6.2 ############################################################
-
-Removed H5PartSetViewEmpty
--------------------------
-
-An empty view can now be selected with:
-H5PartSetNumParticles(file, 0);
-
-Bug Fixes to Attribute Calls in Fortran API
-------------------------------------------
-
-Fixed a problem where attribute values were reverting to zero.
-
-#### H5PART 1.6.1 ############################################################
-
-Chunking in the H5Part API
--------------------------
-
-There is now an H5Part equivalent H5PartSetChunkSize to the existing
-H5BlockDefine3DChunkDims call. Both of these calls enable the chunking
-mechanism in the underlying HDF5 layer. Chunking is used in combination
-with the aligned open calls to pad datasets to alignment multiples
-on disk.
-
-All Steps Available on Write
----------------------------
-
-Previously, existing steps in a file were only accessible in read-only mode.
-Now, all steps are available in all modes, including write-truncate and
-write-append. Thus, it is now possible to overwrite existing data in write
-mode. To help alert the user to this possibility, a warning is issued every
-time an existing dataset is written to. Warnings can be printed by setting
-the verbosity to H5PART_VERB_WARN or higher.
-
-New Throttling Routine
----------------------
-
-Previously, a throttle factor of N meant that for P processors, the total
-number of P writes were divided into N batches of P/N writes.
-
-To better accommodate round-robin lustre striping, the new policy is to
-execute P/N batches of N writes. Thus, matching N to the number of stripes
-results in the desirable 1-1 matching of writers to stripes.
-
-Other Fixes
-----------
-
-* The configure script should correctly detect PGI compilers now.
-* There was a small memory leak in the Fortran file open calls.
-* There was a compile error with HDF5 1.6.x due to a missing assignment.
-
-#### H5PART 1.6 ##############################################################
-
-Updated Documentation
---------------------
-
-The Fortran API has been added to the doxygen documentation. Most entries have
-a reference to their respective C API call.
-
-Regression Test Suite
---------------------
-
-The test subdirectory has been reorganized to include a systematic series
-of regression tests of common use cases for the API. The goal is to have both
-complete coverage of the API (every call is exercised) and testing of some
-unlikely or unsuspected values and cases.
-
-Currently, the C test covers the entire H5Part API and the Fortran test is
-still in development.
-
-Benchmark Utilities
-------------------
-
-Two benchmarking utilities, H5PartBench and H5BlockBench, have been added to
-the tools collection. Both require the parallel library and have functionality
-and syntax similar to the IOR benchmark:
-
-  http://sourceforge.net/projects/ior-sio/
-
-File Mode Flags
---------------
-
-Previously, the only flags used were H5PART_READ, H5PART_WRITE, and
-H5PART_APPEND, and these were mutually exclusive. Additional flags have been
-added to select the underlying virtual file driver (VFD) that HDF5 uses in
-parallel mode and to accommodate the lustre filesystem:
-
-H5PART_VFD_MPIPOSIX (use the MPI-POSIX driver, which bypasses MPI-IO)
-H5PART_VFD_MPIIO_IND (use MPI-IO in independent mode)
-H5PART_FS_LUSTRE (activate H5P tunings for the lustre stripe size)
-
-These flags can be specified using the typical bitwise OR method, e.g.
-
-  char flag = H5PART_WRITE | H5PART_VFD_MPIPOSIX | H5PART_FS_LUSTRE;
-
-will select write mode with these two additional options.
-
-The parallel library now defaults to using the MPI-IO collective mode driver
-(previously it used independent mode). The collective buffering algorithm in
-the Cray XT4/5 environment has been substantially improved in the last year,
-and defaulting to collective mode allows us to take advantage of these
-improvements automatically.
-
-There are also new open calls H5PartOpenAlign and H5PartOpenParallelAlign that
-take an additional 'alignment' value. This value is passed to HDF5 and used to
-pad out objects so that they align to filesystem boundaries. For instance, it
-would make sense to use the stripe size as the alignment value when writing to
-a lustre filesystem.
-
-Unified 'View' Model
--------------------
-
-Views are now supported in both read and write mode (previously only supported
-in read mode). It is possible to specify non-sensical views: you could for
-instance specify a read view that is larger than the dataset on disk. Or you
-could create a write view that is larger than the data in memory. In those
-cases, you will encounter an error when you try to perform a read or write
-operation on a dataset.
-
-There are two new methods for selecting views. H5PartSetNumParticlesStrided
-selects a view with $n$ particles per processor, but such that the data in
-memory is expected to have a 'stride' factor. For instance, if you have
-particle data with fields $x$ and $y$ and a single array with entries
-$x1,y1,x2,y2...$, then the stride factor is 2. Striding works for both reads
-and writes and only affects the view of memory: individual fields are still
-stored as individual arrays on disk.
-
-The second new method is H5PartSetViewIndices, which allows for point
-selections of datasets. You can pass a list of indices for the points you
-want to select. This is useful, for instance, when interfacing with FastBit
-to perform queries that select a small subset of non-contiguous particles.
-
-Because views are now supported on write, it is possible to write a dataset
-using multiple 'passes' or to leave some values unwritten.
-
-Also, all views are now *inclusive*, so that a view of (0,9) corresponds
-to the 10 items 0, 1, 2, ... 9.
-
-Internal Handling of Dataspaces
-------------------------------
-
-H5PartSetNumParticles and H5PartSetNumParticlesStrided now share the same
-HDF5 dataspace state in the H5PartFile struct with the calls that modify
-the view (H5PartSetView etc.). Previously, the memory and disk dataspaces
-were regenerated from the view on every read access, which was unnecessary.
-
-Autogeneration of API Calls
---------------------------
-
-Python scripts have been added to automatically generate read/write call
-variants for different data types.
-
-Renamed Fortran Include
-----------------------
-
-The automake system no longer greps the *F90.inc files to generate an include
-called 'H5Part.inc'. Instead, the *F90.inc files have been renamed to *.f90,
-and awk is used to generate an 'H5PartF.h' file (the same naming convention
-as in MPI's 'mpif.h').
-
-The change to *.f90 was necessary to facilitate integration of the Fortran
-API into doxygen. Note that the *.f90 files will not compile, nor can they
-be included directly. Simply use
-
-  include 'H5PartF.h'
-
-in your Fortran code to include all the definitions for Fortran H5Part/H5Block
-calls.
-
-64 Char Limit on Dataset Names
------------------------------
-
-Previously, a user could overrun internal buffers for dataset names. Now, a
-fixed limit of 64 chars is imposed. Dataset names that are longer than this are
-truncated and a warning is printed. We expect that most users are using
-short canonical names like x, px, id, etc.
-
-Changes to Existing API
-----------------------
-
-The H5BlockGetFieldInfo and H5BlockGetFieldInfoByName calls now both include
-a parameter for the 'type' of the field.
-
-
-#### H5PART 1.4 ##############################################################
-
 Error Handling
 --------------
 Now all functions, in which an error could occure, are returning a
@@ -0,0 +1,418 @@
+==============================================================================
+README file for H5Part configure
+==============================================================================
+
+ 0. HDF5 library
+-----------------
+
+Make sure you have a working version of the HDF5 library in your computer. If you plan
+to use parallel I/O you need to use a parallel HDF5 version. If you don't have the
+library download the sources from http://hdf.ncsa.uiuc.edu/HDF5/
+
+ 1. Quick start (If you feel lucky...)
+----------------------------------------
+
+For many platforms, where compilers are installed in the "default" location
+and all the environment variables are set correctly, it should be sufficient 
+to type: 
+
+./configure [OPTIONS] && make [install]
+
+to have the libraries and test program compiled.
+
+
+==============================================================================
+
+
+ 2. configure line options
+----------------------------
+
+(1) Enable options
+--enable-fortran
+--enable-parallel
+--enable-tools
+--enable-python
+--enable-64 (only for AIX and Irix)
+
+(2) Setting compilers related variables manually
+To assign environment variables (e.g., CC, CFLAGS...), specify them as
+VAR=VALUE.  See below for descriptions of some of the useful variables.
+
+Compiler environment variables:
+  CC          C compiler command
+  CXX         C++ compiler command
+  FC          Fortran compiler command
+
+(3) Setting prefix for installation manually
+--prefix=PREFIX         install files in PREFIX
+
+
+For more information, type:
+
+./configure --help
+
+
+==============================================================================
+
+
+ 3. Platform specific settings for compiling libraries & test programs
+------------------------------------------------------------------------
+
+Building
+        make  : builds the libraries and test programs
+	make install: builds and installs
+        make clean : removes extraneous object files
+        make distclean : returns configuration to unconfigured state
+
+As tested on hosts:
+
+(1) Davinci <davinci.nersc.gov> (Linux"SUSE"-ia64)
+---------------------------------------------------
+FIRST THING FIRST!! Type:
+
+module load intel
+to have the proper compilers set up for use.
+
+module load hdf5_par
+
+[NOTE: module load hdf5 does not work at this moment. 
+Possible installation error of HDF5 on Davinci.]
+
+
+Brief profile:
+CC = icc
+CXX = icc
+FC = ifort
+MPICC = icc
+MPICXX = icc
+MPIFC = ifort
+
+If default doesn't work, try:
+
+For C shell: 
+env CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure && make install
+
+For Korn or Bourne shell:
+CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure && make install
+
+And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
+
+
+On this host, executing:
+
+For C shell: 
+env CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure --enable-fortran --enable-parallel && make install
+
+For Korn or Bourne shell:
+CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure --enable-fortran --enable-parallel && make install
+
+has functioned correctly.
+
+
+To run test program, go to test directory:
+
+(i) Serial test
+run:
+./H5testF
+./H5PartTest
+
+(ii) Parallel test
+run:
+mpirun 2 H5testFpar
+mpirun 2 H5PartTestP
+
+NOTE: Number 2 above is a arbitrary number that indicates the number of processes.
+
+
+
+
+
+(2) Jacquard <jacquard.nersc.gov> (Linux"SUSE"-x86_64)
+-------------------------------------------------------
+Brief profile:
+CC = pathcc
+CXX = pathCC
+FC = pathf90
+MPICC = mpicc
+MPICXX = mpicxx
+MPIFC = mpif90
+
+
+
+If default doesn't work, try:
+
+For C shell: 
+env CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure && make install
+
+For Korn or Bourne shell:
+CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure && make install
+
+And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
+
+
+
+On this host, executing:
+
+For C shell: 
+env CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure --enable-fortran --enable-parallel && make install
+
+For Korn or Bourne shell:
+CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure --enable-fortran --enable-parallel && make install
+
+has functioned correctly.
+
+
+
+To run test program, go to test directory:
+
+(i) Serial test
+run:
+./H5testF
+./H5PartTest
+
+(ii) Parallel test
+In Jacquard, we need a script to run parallel programs, since Jacquard does not support interactive parallel processing. Instead, we need to submit the task to a queue. A sample script (run_H5testFpar.scr) may look like below:
+
+++++++++++++++++++++++++++++++++++++++
+#!/bin/csh
+#PBS -l nodes=1:ppn=2,walltime=00:05:00
+#PBS -N  H5testFpar
+#PBS -o H5testFpar.out
+#PBS -e H5testFpar.err
+#PBS -q debug
+#PBS -A mpccc
+#PBS -V
+
+setenv PBS_OWORKDIR /home/H5Part/test
+
+cd $PBS_O_WORKDIR
+mpirun -np 2 ./H5testFpar
+++++++++++++++++++++++++++++++++++++++
+
+Then, we need to submit the task to a queue by running:
+
+qsub run_H5testFpar.scr
+
+After processed, the result will appear in H5testFpar.out, and error messages will appear in H5testFpar.err.
+
+
+
+
+
+(3) Bassi <bassi.nersc.ogv> (AIX5.3.0.0-Power 3)
+-------------------------------------------------
+FIRST THING FIRST!! Type:
+
+module load gcc
+
+to have the proper compilers set up for use.
+
+Brief profile:
+CC = cc_r
+CXX = cc_r
+FC = xlf_r
+MPICC = mpcc_r
+MPICXX = mpcc_r
+MPIFC = mpxlf_r
+
+
+
+If default doesn't work, try:
+
+For C shell: 
+env CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure && make install
+
+For Korn or Bourne shell:
+CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure && make install
+
+And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
+
+
+
+On this host, executing:
+
+For C shell: 
+env CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure --enable-fortran --enable-parallel && make install
+
+For Korn or Bourne shell:
+CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure --enable-fortran --enable-parallel && make install
+
+has functioned correctly.
+
+
+
+To run test program, go to test directory:
+
+(i) Serial test
+run:
+./H5testF
+./H5PartTest
+
+(ii) Parallel test
+run:
+unsetenv MP_SINGLE_THREAD
+poe ./H5PartTestP -procs 2 -nodes 1
+poe ./H5testFpar -procs 2 -nodes 1
+
+For more details on how to run parallel programs on Bassi, go to:
+
+http://www.nersc.gov/nusers/resources/bassi/running_jobs/
+
+
+
+
+
+(4) Starsky <starsky.lbl.gov> (Darwin8.5.0-PowerPC)
+----------------------------------------------------
+FIRST THING FIRST!! Set environment variables: (in tcsh)
+
+setenv LD_LIBRARY_PATH /usr/local/g95/lib/gcc-lib/powerpc-apple-darwin8.5.0/4.0.3/
+setenv PATH ${PATH}:/usr/local/g95/bin
+
+NOTE: This environment variable setting is specifit to Starsky. It is to make configure find the fortran compiler.
+
+Brief profile:
+CC = gcc
+CXX = g++
+FC = g95
+
+
+
+If default doesn't work, try:
+
+For C shell: 
+env CC=gcc CXX=g++ FC=g95 ./configure && make install
+
+For Korn or Bourne shell:
+CC=gcc CXX=g++ FC=g95 ./configure && make install
+
+And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
+
+
+
+On this host, executing:
+
+For C shell: 
+env CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
+
+For Korn or Bourne shell:
+CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
+
+has functioned correctly.
+
+
+
+To run test program, go to test directory:
+
+(i) Serial test
+run:
+./H5testF
+./H5PartTest
+
+
+
+
+
+(5) Linux AMD64 Visualization group workstations (Linux"SUSE"-x86_64)
+---------------------------------------------------------
+Brief profile:
+CC = gcc
+CXX = g++
+FC = g95
+
+
+
+If default doesn't work, try:
+
+For C shell: 
+env CC=gcc CXX=g++ FC=g95 ./configure && make install
+
+For Korn or Bourne shell:
+CC=gcc CXX=g++ FC=g95 ./configure && make install
+
+And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
+
+
+
+On this host, executing:
+
+For C shell: 
+env CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
+
+For Korn or Bourne shell:
+CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
+
+has functioned correctly.
+
+
+
+To run test program, go to test directory:
+
+(i) Serial test
+run:
+./H5testF
+./H5PartTest
+
+
+(6) Cray XT3 @ CSCS gele
+
+  1) modules/3.1.6         9) PrgEnv-pgi/1.4.26    17) xt-lustre-ss/1.4.26
+  2) MySQL/4.0.26         10) xt-pbs/5.3.4         18) Base-opts/1.4.26
+  3) acml/3.0             11) xt-service/1.4.26    19) subversion/1.3.2
+  4) pgi/6.1.4            12) xt-libc/1.4.26       20) zlib/1.2.3
+  5) totalview/7.2.0      13) xt-os/1.4.26         21) szip/2.0
+  6) xt-libsci/1.4.26     14) xt-catamount/1.4.26  22) hdf5/1.6.5
+  7) xt-mpt/1.4.26        15) xt-boot/1.4.26
+  8) xt-pe/1.4.26         16) xt-crms/1.4.26
+
+
+CFLAGS="-I$H5HOME/include -DF77_SINGLE_UNDERSCORE" LDFLAGS="-L$H5HOME/lib -L$ZHOME/lib" ./configure --enable-parallel --enable-fortran
+
+
+(7) merlin00 / merlin3 
+
+Currently Loaded Modulefiles:
+  1) hdf5/hdf5-1.6.5            2) root/root-5.10.00          3) mpi/mpich2-1.0.3-pgi-6.1   4) pgi/pgi_64-6.1
+
+FC=mpif90 ./configure --enable-parallel --enable-fortran
+
+
+
+
+
+
+
+==============================================================================
+
+
+ 4. Trouble shooting (Things to check for...)
+--------------------------------------------
+(0) Have you set the LD_LIBRARY_PATH?
+---Some systems require the user to manually set the environment variable, LD_LIBRARY_PATH. To do so:
+
+set the environment variable HDF5ROOT or PHDF5ROOT to point to your installation of HDF5 (serial and/or parallel respectively).
+
+For Korn or Bourne shell:
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HDF5ROOT}/lib;export LD_LIBRARY_PATH
+	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:{PHDF5ROOT}/lib;export LD_LIBRARY_PATH
+
+For C shell:
+	setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${HDF5ROOT}/lib
+	setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${PHDF5ROOT}/lib
+
+Note that the values of HDF5ROOT & PHDF5ROOT will be in the "summary" section when you run configure.
+
+Not properly set LD_LIBRARY_PATH value may result in a runtime error:
+
+./H5PartTest: error while loading shared libraries: libhdf5.so.0: cannot open shared object file: No such file or directory
+
+(1) Are the compilers set correctly? 
+---Check with: which COMPILER
+
+(2) Have you installed HDF5?
+---You can get it at: http://vis.lbl.gov/Research/AcceleratorSAPP/index.html
+
+(3) Have you loaded the proper modules? 
+---It is necessary in Davinci & Bassi, and configure && make install may not work without it.
+
+
@@ -1,48 +1,46 @@
 #!/bin/sh
 # Run this to generate all the initial makefiles, etc.

-ACLOCAL_FLAGS="-I m4 -I . $ACLOCAL_FLAGS"
-LIBTOOLIZE_FLAGS="--force $LIBTOOLIZE_FLAGS"
-AUTOMAKE_FLAGS="--add-missing --copy --foreign $AUTOMAKE_FLAGS"
-
-LIBTOOLIZE=`which libtoolize`
-if [ "$LIBTOOLIZE" = "" ]; then
-        LIBTOOLIZE=`which glibtoolize`
-fi
-if [ "$LIBTOOLIZE" = "" ]; then
-        echo "libtoolize not found" 1>&2
-        exit 1
-fi
-
 echo "+ making misc files ..."
 touch NEWS README AUTHORS ChangeLog
 echo
-$LIBTOOLIZE $LIBTOOLIZE_FLAGS || {
-	echo "libtoolize failed"
-	exit 1
-}
+echo
 echo
 echo "+ running aclocal ..."
 aclocal $ACLOCAL_FLAGS || {
-	echo "aclocal failed - check that all needed development files are present on system"
-	exit 1
+  echo
+  echo "aclocal failed - check that all needed development files are present on system"
+  exit 1
 }
 echo
+echo
+echo
+echo
 echo "+ running autoheader ... "
 autoheader || {
-	echo "autoheader failed"
-	exit 1
+  echo
+  echo "autoheader failed"
+  exit 1
 }
 echo
+echo
+echo
 echo "+ running autoconf ... "
 autoconf || {
-	echo "autoconf failed"
-	exit 1
+  echo
+  echo "autoconf failed"
+  exit 1
 }
 echo
+echo
+echo
 echo "+ running automake ... "
-automake $AUTOMAKE_FLAGS || {
-	echo "automake failed"
-	exit 1
+automake -a -c --foreign || {
+  echo
+  echo "automake failed"
+  exit 1
 }
+echo
+echo
+echo

@@ -1,135 +0,0 @@
-# ===========================================================================
-#        http://www.gnu.org/software/autoconf-archive/ax_pkg_swig.html
-# ===========================================================================
-#
-# SYNOPSIS
-#
-#   AX_PKG_SWIG([major.minor.micro], [action-if-found], [action-if-not-found])
-#
-# DESCRIPTION
-#
-#   This macro searches for a SWIG installation on your system. If found,
-#   then SWIG is AC_SUBST'd; if not found, then $SWIG is empty.  If SWIG is
-#   found, then SWIG_LIB is set to the SWIG library path, and AC_SUBST'd.
-#
-#   You can use the optional first argument to check if the version of the
-#   available SWIG is greater than or equal to the value of the argument. It
-#   should have the format: N[.N[.N]] (N is a number between 0 and 999. Only
-#   the first N is mandatory.) If the version argument is given (e.g.
-#   1.3.17), AX_PKG_SWIG checks that the swig package is this version number
-#   or higher.
-#
-#   As usual, action-if-found is executed if SWIG is found, otherwise
-#   action-if-not-found is executed.
-#
-#   In configure.in, use as:
-#
-#     AX_PKG_SWIG(1.3.17, [], [ AC_MSG_ERROR([SWIG is required to build..]) ])
-#     AX_SWIG_ENABLE_CXX
-#     AX_SWIG_MULTI_MODULE_SUPPORT
-#     AX_SWIG_PYTHON
-#
-# LICENSE
-#
-#   Copyright (c) 2008 Sebastian Huber <sebastian-huber@web.de>
-#   Copyright (c) 2008 Alan W. Irwin
-#   Copyright (c) 2008 Rafael Laboissiere <rafael@laboissiere.net>
-#   Copyright (c) 2008 Andrew Collier
-#   Copyright (c) 2011 Murray Cumming <murrayc@openismus.com>
-#
-#   This program is free software; you can redistribute it and/or modify it
-#   under the terms of the GNU General Public License as published by the
-#   Free Software Foundation; either version 2 of the License, or (at your
-#   option) any later version.
-#
-#   This program is distributed in the hope that it will be useful, but
-#   WITHOUT ANY WARRANTY; without even the implied warranty of
-#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
-#   Public License for more details.
-#
-#   You should have received a copy of the GNU General Public License along
-#   with this program. If not, see <http://www.gnu.org/licenses/>.
-#
-#   As a special exception, the respective Autoconf Macro's copyright owner
-#   gives unlimited permission to copy, distribute and modify the configure
-#   scripts that are the output of Autoconf when processing the Macro. You
-#   need not follow the terms of the GNU General Public License when using
-#   or distributing such scripts, even though portions of the text of the
-#   Macro appear in them. The GNU General Public License (GPL) does govern
-#   all other use of the material that constitutes the Autoconf Macro.
-#
-#   This special exception to the GPL applies to versions of the Autoconf
-#   Macro released by the Autoconf Archive. When you make and distribute a
-#   modified version of the Autoconf Macro, you may extend this special
-#   exception to the GPL to apply to your modified version as well.
-
-#serial 11
-
-AC_DEFUN([AX_PKG_SWIG],[
-        # Ubuntu has swig 2.0 as /usr/bin/swig2.0
-        AC_PATH_PROGS([SWIG],[swig swig2.0])
-        if test -z "$SWIG" ; then
-                m4_ifval([$3],[$3],[:])
-        elif test -n "$1" ; then
-                AC_MSG_CHECKING([SWIG version])
-                [swig_version=`$SWIG -version 2>&1 | grep 'SWIG Version' | sed 's/.*\([0-9][0-9]*\.[0-9][0-9]*\.[0-9][0-9]*\).*/\1/g'`]
-                AC_MSG_RESULT([$swig_version])
-                if test -n "$swig_version" ; then
-                        # Calculate the required version number components
-                        [required=$1]
-                        [required_major=`echo $required | sed 's/[^0-9].*//'`]
-                        if test -z "$required_major" ; then
-                                [required_major=0]
-                        fi
-                        [required=`echo $required | sed 's/[0-9]*[^0-9]//'`]
-                        [required_minor=`echo $required | sed 's/[^0-9].*//'`]
-                        if test -z "$required_minor" ; then
-                                [required_minor=0]
-                        fi
-                        [required=`echo $required | sed 's/[0-9]*[^0-9]//'`]
-                        [required_patch=`echo $required | sed 's/[^0-9].*//'`]
-                        if test -z "$required_patch" ; then
-                                [required_patch=0]
-                        fi
-                        # Calculate the available version number components
-                        [available=$swig_version]
-                        [available_major=`echo $available | sed 's/[^0-9].*//'`]
-                        if test -z "$available_major" ; then
-                                [available_major=0]
-                        fi
-                        [available=`echo $available | sed 's/[0-9]*[^0-9]//'`]
-                        [available_minor=`echo $available | sed 's/[^0-9].*//'`]
-                        if test -z "$available_minor" ; then
-                                [available_minor=0]
-                        fi
-                        [available=`echo $available | sed 's/[0-9]*[^0-9]//'`]
-                        [available_patch=`echo $available | sed 's/[^0-9].*//'`]
-                        if test -z "$available_patch" ; then
-                                [available_patch=0]
-                        fi
-                        # Convert the version tuple into a single number for easier comparison.
-                        # Using base 100 should be safe since SWIG internally uses BCD values
-                        # to encode its version number.
-                        required_swig_vernum=`expr $required_major \* 10000 \
-                            \+ $required_minor \* 100 \+ $required_patch`
-                        available_swig_vernum=`expr $available_major \* 10000 \
-                            \+ $available_minor \* 100 \+ $available_patch`
-
-                        if test $available_swig_vernum -lt $required_swig_vernum; then
-                                AC_MSG_WARN([SWIG version >= $1 is required.  You have $swig_version.])
-                                SWIG=''
-                                m4_ifval([$3],[$3],[])
-                        else
-                                AC_MSG_CHECKING([for SWIG library])
-                                SWIG_LIB=`$SWIG -swiglib`
-                                AC_MSG_RESULT([$SWIG_LIB])
-                                m4_ifval([$2],[$2],[])
-                        fi
-                else
-                        AC_MSG_WARN([cannot determine SWIG version])
-                        SWIG=''
-                        m4_ifval([$3],[$3],[])
-                fi
-        fi
-        AC_SUBST([SWIG_LIB])
-])
@@ -0,0 +1,44 @@
+/* config.h.in.  Generated from configure.ac by autoheader.  */
+
+/* "" */
+#undef MY_BUILD_CPU
+
+/* "" */
+#undef MY_BUILD_OS
+
+/* "" */
+#undef MY_BUILD_VENDOR
+
+/* "" */
+#undef MY_GNUNAME
+
+/* "" */
+#undef MY_UNAME
+
+/* Name of package */
+#undef PACKAGE
+
+/* Define to the address where bug reports for this package should be sent. */
+#undef PACKAGE_BUGREPORT
+
+/* Define to the full name of this package. */
+#undef PACKAGE_NAME
+
+/* Define to the full name and version of this package. */
+#undef PACKAGE_STRING
+
+/* Define to the one symbol short name of this package. */
+#undef PACKAGE_TARNAME
+
+/* Define to the version of this package. */
+#undef PACKAGE_VERSION
+
+/* Version number of package */
+#undef VERSION
+
+/* Define to 1 if on AIX 3.
+   System headers sometimes define this.
+   We just want to avoid a redefinition error message.  */
+#ifndef _ALL_SOURCE
+# undef _ALL_SOURCE
+#endif
@@ -1,139 +1,77 @@
-#
-#  Copyright (c) 2006-2016, The Regents of the University of California,
-#  through Lawrence Berkeley National Laboratory (subject to receipt of any
-#  required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
-#  Institut (Switzerland).  All rights reserved.
-#
-#  License: see file COPYING in top level of source distribution.
-#
-AC_INIT([H5hut], [2.0.0rc1], [h5part@lists.psi.ch], H5hut)
-AC_PREREQ(2.60)
-AC_CONFIG_HEADERS(config.h)
-AC_CONFIG_MACRO_DIR([m4])
-AM_INIT_AUTOMAKE
+# Every configure script must call AC_INIT before doing anything else.
+# AC_INIT (package, version, [bug-report], [tarname])
+AC_INIT([H5Part], [1.4.0], [h5part@lists.psi.ch], H5Part)

-ENABLE_DEBUG='no'
-ENABLE_C='yes'
-ENABLE_FORTRAN='no'
-ENABLE_PARALLEL='no'
-ENABLE_PYTHON='no'
+
+# Ensure that a recent enough version of Autoconf is being used. 
+# If the version of Autoconf being used to create configure is earlier than version, 
+# print an error message to the standard error output and do not create configure.
+#AC_PREREQ(2.59)
+
+
+# should be called right after AC_INIT.
+# configure scripts can create a C header file containing `#define' directives. 
+# The AC_CONFIG_HEADERS macro selects this kind of output.
+AC_CONFIG_HEADER(config.h)

 ###############################################################################
-# --enable-xxx and --with-xxx Arguments
-AC_ARG_ENABLE(
-	[debug],
-	[AS_HELP_STRING([--enable-debug], [Compile with debug flags [default=no]])],
-	[ENABLE_DEBUG=$enableval])
-AM_CONDITIONAL([ENABLE_DEBUG], [test "$ENABLE_DEBUG" = "yes"])
+################# --enable-xxx and --with-xxx Argument ########################
+###############################################################################

 AC_ARG_ENABLE(
-	[c],
-	[AS_HELP_STRING([--enable-c],
-	[Compile the C interface [default=yes]])],
-	[ENABLE_C=$enableval])
-AM_CONDITIONAL([ENABLE_C], [test "$ENABLE_C" = "yes"])
+	[64],
+	[AC_HELP_STRING([--enable-64],
+	[Compile using 64-bit flags [default=no]])],
+	[USE_64=$enableval])

 AC_ARG_ENABLE(
 	[fortran],
-	[AS_HELP_STRING([--enable-fortran],
+        [AC_HELP_STRING([--enable-fortran],
 	[Compile the Fortran interface [default=no]])],
-	[ENABLE_FORTRAN=$enableval])
-AM_CONDITIONAL([ENABLE_FORTRAN], [test "$ENABLE_FORTRAN" = "yes"])
-
-AC_ARG_ENABLE(
-	[python],
-	[AS_HELP_STRING([--enable-python],
-	[Compile the Python interface [default=no]])],
-	[ENABLE_PYTHON=$enableval])
-AM_CONDITIONAL([ENABLE_PYTHON], [test "$ENABLE_PYTHON" = "yes"])
+        [USE_FORTRAN=$enableval])

 AC_ARG_ENABLE(
 	[parallel],
-	[AS_HELP_STRING([--enable-parallel],
+        [AC_HELP_STRING([--enable-parallel],
 	[Compile the MPI/IO interface [default=no]])],
-	[ENABLE_PARALLEL=$enableval])
-AM_CONDITIONAL([ENABLE_PARALLEL], [test "$ENABLE_PARALLEL" = "yes"])
+        [USE_PARALLEL=$enableval])

 AC_ARG_ENABLE(
-	[large-indices],
-	[AC_HELP_STRING([--enable-large-indices],
-	[Compile with 64bit local IDs and indices [default=no]])],
-	[USE_LARGE_INDICES=$enableval])
-
-AC_ARG_ENABLE(
-        [experimental],
-        [AS_HELP_STRING([--enable-experimental],
-        [Compile experimental code [default=no]])],
-        [ENABLE_EXPERIMENTAL=$enableval])
-AM_CONDITIONAL([ENABLE_EXPERIMENTAL], [test "$ENABLE_EXPERIMENTAL" = "yes"])
-
-AC_ARG_ENABLE(
-	[vtkconverter],
-	[AS_HELP_STRING([--enable-vtkconverter],
-	[Compile the vtk to H5hut converter for grids [default=no]])],
-	[ENABLE_VTKCONVERTER=$enableval])
-AM_CONDITIONAL([ENABLE_VTKCONVERTER], [test "$ENABLE_VTKCONVERTER" = "yes"])
-
-AC_ARG_ENABLE(
-	[examples],
-	[AS_HELP_STRING([--enable-examples],
-	[Compile the H5hut examples [default=no]])],
-	[ENABLE_EXAMPLES=$enableval])
-AM_CONDITIONAL([ENABLE_EXAMPLES], [test "$ENABLE_EXAMPLES" = "yes"])
+	[tools],
+        [AC_HELP_STRING([--enable-tools],
+	[Compile h5part tools [default=no]])],
+        [USE_TOOLS=$enableval])

 AC_ARG_WITH(
-	[hdf5],
-	[AS_HELP_STRING([--with-hdf5],
-	[path to HDF5 installation [default=""]])],
-	[HDF5_PREFIX=$withval], [])
-
-AC_ARG_WITH(
-	[mpi],
-	[AS_HELP_STRING([--with-mpi],
+	[mpipath],
+	[AC_HELP_STRING([--with-mpipath],
 	[path to MPI installation [default=""]])],
-	[PATH=$MPI_PREFIX/bin:$PATH])
+        [MPIPATH=$withval], [MPIPATH=""])

 AC_ARG_WITH(
-	[lustre],
-	[AS_HELP_STRING([--with-lustre],
-	[path to lustre user API [default=""]])],
-	[LUSTREPATH=$withval], [LUSTREPATH=""])
+	[hdf5path],
+	[AC_HELP_STRING([--with-hdf5path],
+	[path to HDF5 installation [default=""]])],
+	[HDF5PATH=$withval], [HDF5PATH=""])

-AC_ARG_WITH(
-	[parmetis],
-	[AC_HELP_STRING([--with-parmetis],
-	[path to ParMETIS API [default=""]])],
-	[PARMETIS_PREFIX=$withval], [])
-
-AC_ARG_WITH(
-	[vtk],
-	[AC_HELP_STRING([--with-vtk],
-	[VTK installation path [default=""]])],
-	[VTK_PREFIX=$withval], [])
-
-# Determine a C/C++ compiler to use. 
-CC=''
-CXX=''
-if test "x$ENABLE_PARALLEL" = "xyes"; then
-   	c_compilers="mpicc cc"
-	cxx_compilers="mpic++ CC"
-else
-	c_compilers="pgcc pathcc icc gcc cc_r cc"
-	cxx_compilers="pgcc pathcc icc g++ cc_r c++"
-fi
-
-AC_PROG_CC($c_compilers)
-AC_PROG_CXX($cxx_compilers)
-
-CC=`which $CC`
-CXX=`which $CXX`
-
-AC_PROG_CC_C99
-if test "x$ac_cv_prog_cc_c99" = "xno"; then
-	AC_MSG_ERROR([Cannot set C compiler to use C99 standard!])
-	exit 1
-fi
+###############################################################################
+################# A SIMPLE WORK AROUND TO USE ENV. VARS #######################
+###############################################################################

+SAVE_CC=$CC
+SAVE_CXX=$CXX
+SAVE_FC=$FC
+SAVE_MPICC=$MPICC
+SAVE_MPICXX=$MPICXX
+SAVE_MPIFC=$MPIFC
+SAVE_MPILIB=$MPILIB
+SAVE_MPIINC=$MPIINC
+SAVE_CFLAGS=$CFLAGS
+CFLAGS=''
+SAVE_FFLAGS=$FFLAGS
+SAVE_MPIROOT=$MPIROOT
+SAVE_HDF5ROOT=$HDF5ROOT
+SAVE_LDFLAGS=$LDFLAGS

 ###############################################################################
 ############### PATH SERACH FUNCTION - to be used later... ####################
@@ -147,80 +85,117 @@ fi
 #   @enddesc
 #@@*/

-PATH_Search() {
-	eval  $1=""
-	if test $# -lt 4 ; then
-		h5part_basedir=""
-	else
-		h5part_basedir="$4/"
-	fi
-	for h5part_place in $2; do
-		AC_MSG_CHECKING([looking in $h5part_place ... ])
-		if test -r "$h5part_basedir$h5part_place/$3" ; then
-			AC_MSG_RESULT([found])
-			eval $1="$h5part_place"
-			break
-		fi
-		AC_MSG_RESULT([no])
-	done
-	return
+PATH_Search()
+{
+  eval  $1=""
+  if test $# -lt 4 ; then
+    h5part_basedir=""
+  else
+    h5part_basedir="$4/"
+  fi
+  for h5part_place in $2
+    do
+      echo -n "looking in $h5part_place ... $ac_c" #1>&6
+      if test -r "$h5part_basedir$h5part_place/$3" ; then
+        echo "$ac_t"" found" #1>&6
+        eval $1="$h5part_place"
+        break
+      fi
+      if test -d "$h5part_basedir$h5part_place/$3" ; then
+        echo "$ac_t"" found" #1>&6
+        eval $1="$h5part_place"
+        break
+      fi
+      echo "$ac_t"" no" #1>&6
+    done
+
+  return
 }

+
+
 ###############################################################################
-# MISC SETTINGS INCLUDING C & C++ COMPILER SETTING
-
+############# MISC SETTINGS INCLUDING C & C++ COMPILER SETTING ################
+###############################################################################
+# Compute the canonical host-system type variable, host, and its three
+# individual parts host_cpu, host_vendor, and host_os.
 AC_CANONICAL_HOST
-AC_PROG_MAKE_SET
-        
-CFLAGS="$CFLAGS -Wall"
-CXXFLAGS="$CFLAGS -Wall"
-FFLAGS="$FFLAGS -Wall"

-# debug enabled?
-AC_MSG_CHECKING([if debug is enabled])
-if test "X$ENABLE_DEBUG" = "Xyes"; then
-	AC_MSG_RESULT([yes])
-	CFLAGS="$CFLAGS -g3 -O0"
-	CXXFLAGS="$CFLAGS -g3 -O0"
-	FFLAGS="$FFLAGS -g3 -O0"
-else
-	AC_MSG_RESULT([no])
-	CFLAGS="$CFLAGS -O3"
-	CXXFLAGS="$CFLAGS -O3"
-	FFLAGS="$FFLAGS -O3"
+
+uname=`uname -s`
+if test $uname = "AIX"; then
+  AC_MSG_CHECKING([if system is AIX])
+  AC_MSG_RESULT([OK])
+
+  # If on AIX, define _ALL_SOURCE. Allows the use of some BSD functions. 
+  # Should be called before any macros that run the C compiler.
+  AC_AIX
 fi


-AC_PROG_INSTALL
-AC_PROG_AWK
+# DAVINCI SPECIFIC!!!
+if test `uname -n` = "davinci"; then
+   echo "DAVINCI SPECIFIC TESTING FOR STDC++ LIBRARY!"
+   PATH_Search STDCXX_CHECK '/usr/lib64 /usr/lib' libstdc++.a

-# Disable shared libraries by default: can be enabled with --enable-shared
-LT_INIT([disable-shared])
-AC_PROG_LIBTOOL
+   # if STDCXX_CHECK is set...
+   if test "$STDCXX_CHECK" = "/usr/lib64"; then
+      echo "STDCXX setting ..."
+      echo "STDCXX_CHECK = $STDCXX_CHECK ..."
+      STDCXX="-L/usr/lib64 -lstdc++"
+      echo "STDCXX =  $STDCXX ..."
+   elif test "$STDCXX_CHECK" = "/usr/lib"; then
+      echo "STDCXX setting ..."
+      echo "STDCXX_CHECK = $STDCXX_CHECK ..."
+      STDCXX="-L/usr/lib -lstdc++"
+      echo "STDCXX =  $STDCXX ..."
+   fi 
+fi
+
+
+# Determine a C compiler to use. 
+# If CC is not already set in the environment, check for gcc and cc, then
+# for other C compilers. 
+# Set output variable CC to the name of the compiler found.
+AC_PROG_CC(pathcc icc cc_r gcc cc)
+
+# AC_PROG_CC doesn't pick up cc_r in Bassi. The following AC_PATH_PROGS
+# is the fix.
+AC_PATH_PROGS([BAS_CC], [cc_r], [], [$PATH])
+
+# if BAS_CC not empty
+if test -n "$BAS_CC"; then
+  echo "CC setting for Bassi ..."
+  CC=$BAS_CC
+  echo "CC =  $CC ..."
+fi 
+
+
+# Determine a C++ compiler to use. 
+# Check if the environment variable CXX or CCC (in that order) is set; 
+# if so, then set output variable CXX to its value.
+# Otherwise, if the macro is invoked without an argument, 
+# then search for a C++ compiler under the likely names (first g++ and c++
+# then other names). 
+# If none of those checks succeed, then as a last resort set CXX to g++.
+AC_PROG_CXX(pathCC icc cc_r g++ gcc cc)
+
+
+# Set output variable INSTALL to the path of a BSD-compatible install program,
+# if one is found in the current PATH. 
+# Otherwise, set INSTALL to `dir/install-sh -c`
+AC_PROG_INSTALL
+
+
+# AM_INIT_AUTOMAKE is required to use autoconf with automake
+AM_INIT_AUTOMAKE()
+
+
+AC_PROG_RANLIB

 # Default prefix for bindir, etc... (eg >> ./build/bin)
 AC_PREFIX_DEFAULT(`pwd`/build)

-# Checks for header files.
-AC_CHECK_HEADERS([fcntl.h limits.h stdint.h stdlib.h string.h sys/ioctl.h unistd.h])
-
-# Checks for typedefs, structures, and compiler characteristics.
-AC_HEADER_STDBOOL
-AC_C_INLINE
-AC_TYPE_INT16_T
-AC_TYPE_INT32_T
-AC_TYPE_INT64_T
-AC_TYPE_SIZE_T
-AC_TYPE_SSIZE_T
-AC_TYPE_UINT16_T
-AC_TYPE_UINT32_T
-AC_TYPE_UINT64_T
-AC_CHECK_TYPES([ptrdiff_t])
-
-# Checks for library functions.
-AC_FUNC_MALLOC
-AC_FUNC_REALLOC
-AC_CHECK_FUNCS([memmove memset pow strchr strdup strerror strstr])

 # AC_DEFINE_UNQUOTED (variable, value, [description])
 # Define the C preprocessor variable variable to value
@@ -232,268 +207,401 @@ AC_DEFINE_UNQUOTED(MY_GNUNAME, "${host_cpu}-${host_vendor}-${host_os}", "")
 AC_DEFINE_UNQUOTED(MY_UNAME, "$uname", "")


+
+###############################################################################
+######################## CONFIGURE LINE OPTIONS ###############################
 ###############################################################################
-# PROCESS ARGUMENTS

-# C enabled?
-AC_MSG_CHECKING([if C interface enabled])
-if test "X$ENABLE_C" = "Xyes"; then
-	AC_MSG_RESULT([yes])
+###################### 64-bit compilation enabled #############################
+AC_MSG_CHECKING([if 64-bit compilation is enabled])
+
+
+# If --enable-64 is set in the configure line
+if test "X$USE_64" = "Xyes"; then
+    AC_MSG_RESULT([yes])
+    if test $uname = "AIX"; then
+        CFLAGS="$CFLAGS -q64"
+        FFLAGS="$FFLAGS -q64"
+    fi
+
+    if test $uname = "IRIX64"; then
+        CFLAGS="$CFLAGS -64"
+        FFLAGS="$FFLAGS -64 -fPIC -fno-second-underscore"
+    fi
 else
-        AC_MSG_RESULT([no])
+    AC_MSG_RESULT([no])
 fi

-# fortran enabled?
+
+############################ fortran enabled ##################################
 AC_MSG_CHECKING([if fortran interface enabled])
-if test "X$ENABLE_FORTRAN" = "Xyes"; then
-	AC_MSG_RESULT([yes])
-	AC_LANG_PUSH(Fortran)
-	FC=''
-	F77=''
-	F90=''
-	if test "X$ENABLE_PARALLEL" = "Xyes"; then
-		AC_PROG_FC(mpif90 mpif77)
-	else
-		AC_PROG_FC(pgf90 ifort xlf_r pathf90 g95 g90 ftn gfortran)
-	fi
-	FC=`which $FC`
-	
-	# Query Fortran symbol mangling. __AC_FC_NAME_MANGLING sets
-	# ac_cv_{f77,fc}_mangling. The value contains three fields, separated
-	# by commas:
-	#
-	# lower case / upper case:
-	#    case translation of the Fortran symbols
-	# underscore / no underscore:
-	#    whether the compiler appends "_" to symbol names
-	# extra underscore / no extra underscore:
-	#    whether the compiler appends an extra "_" to symbol names already
-	#    containing at least one underscore
-	__AC_FC_NAME_MANGLING
-	if test "X${ac_cv_fc_mangling}" == "Xlower case, no underscore, no extra underscore"; then
-	    	CPPFLAGS+=" -DFC_MANGLING_LOWERCASE_NO_UNDERSCORE"
-	elif test "X${ac_cv_fc_mangling}" == "Xlower case, underscore, no extra underscore"; then
-	    	CPPFLAGS+=" -DFC_MANGLING_LOWERCASE_SINGLE_UNDERSCORE"
-	elif test "X${ac_cv_fc_mangling}" == "Xlower case, underscore, extra underscore"; then
-	    	CPPFLAGS+=" -DFC_MANGLING_LOWERCASE_DOUBLE_UNDERSCORE"
-	elif test "X${ac_cv_fc_mangling}" == "Xupper case, no underscore, no extra underscore"; then
-	    	CPPFLAGS+=" -DFC_MANGLING_UPPERCASE_NO_UNDERSCORE"
-	elif test "X${ac_cv_fc_mangling}" == "Xupper case, underscore, no extra underscore"; then
-	    	CPPFLAGS+=" -DFC_MANGLING_UPPERCASE_SINGLE_UNDERSCORE"
-	elif test "X${ac_cv_fc_mangling}" == "Xupper case, underscore, extra underscore"; then
-	    	CPPFLAGS+=" -DFC_MANGLING_UPPERCASE_DOUBLE_UNDERSCORE"
-	fi
-	AC_LANG_POP(Fortran)
+if test "X$USE_FORTRAN" = "Xyes"; then
+    AC_MSG_RESULT([yes])
+
+    AC_PROG_FC(ifort xlf_r pathf90 g95 g90 ftn gfortran)
+    if test -z "$FC" ; then
+        AC_MSG_ERROR([Cannot find a fortran compiler!!!])
+        exit 1
+    fi
+
+    if test ! $uname = "AIX"; then
+        FFLAGS="${FFLAGS} -fPIC -fno-second-underscore"
+    fi
+
+    AC_MSG_CHECKING([symbol convention in object files])
+    `cd src && rm -f TestUnderscore.o TestUnderscoreC.o TestUnderscore`
+    `cd src && ${FC} ${FFLAGS} -c TestUnderscore.f`
+    `cd src && ${CC} ${CFLAGS} -c TestUnderscoreC.c`
+    `cd src && ${FC} ${FFLAGS} -o TestUnderscore TestUnderscore.o TestUnderscoreC.o -lc`
+
+    if test -f src/TestUnderscore ; then
+        UNDERSCORE_H=Underscore.h
+        `cd src && ./TestUnderscore > Underscore.h`
+        AC_MSG_RESULT([ok])
+    else
+        AC_MSG_RESULT([nok])
+        AC_MSG_ERROR([Cannot build fortran executables!!!])
+        exit 1
+    fi
 else
-	AC_MSG_RESULT([no])
+    AC_MSG_RESULT([no])
 fi

-# python enabled?
-if test "X$ENABLE_PYTHON" = "Xyes"; then
-
-    	AM_PATH_PYTHON([2.5])
-    	AX_PKG_SWIG([1.3], [], [ AC_MSG_ERROR([SWIG is required to build..]) ])
-    	#SWIG_ENABLE_CXX
-    	#SWIG_PYTHON
-
-    	PYTHON_PREFIX=`python-config --prefix`
-    	PYTHON_EXEC_PREFIX=`python-config --exec-prefix`
-
-    	# make sure numpy is available..
-    	AC_MSG_CHECKING([for numpy support])
-    	NUMPY_INCLUDE=`${PYTHON} -c 'import numpy; print numpy.get_include()'`
-
-	if test "X$?" = "X0" ; then
-		AC_MSG_RESULT([$NUMPY_INCLUDE])
-    	else
-		AC_MSG_RESULT([no])
- 		exit 1
-    	fi
-   	AC_SUBST([NUMPY_INCLUDE])
-
-    	#check for parallel support
-    	if test "X$ENABLE_PARALLEL" = "Xyes"; then
-        	AC_MSG_CHECKING([for mpi4py support])
-        	MPI4PY_INCLUDE=`${PYTHON} -c 'import mpi4py; print mpi4py.get_include()'`
-
-        	if test "X$?" = "X0" ; then
-			AC_MSG_RESULT([$MPI4PY_INCLUDE])
-        	else
-            		AC_MSG_RESULT([no])
-            		exit 1
-        	fi
-		AC_SUBST([MPI4PY_INCLUDE])
-    	fi
-
-	AC_MSG_RESULT([ok])
-
-else
-    	AC_MSG_CHECKING([if python interface is enabled])
-    	AC_MSG_RESULT([no])
-fi
-
-######################## large indices enabled ###########################
-AC_MSG_CHECKING([if large indices are enabled])
-if test "X$USE_LARGE_INDICES" = "Xyes"; then
-	AC_MSG_RESULT([yes])
-	CFLAGS="${CFLAGS} -DUSE_LARGE_INDICES"
-else
-	AC_MSG_RESULT([no])
-fi

 ######################## parallel interface enabled ###########################
 AC_MSG_CHECKING([if parallel interface enabled])
-if test "X$ENABLE_PARALLEL" = "Xyes"; then
-	AC_MSG_RESULT([yes])
-	CPPFLAGS="${CPPFLAGS} -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK"
+if test "X$USE_PARALLEL" = "Xyes"; then
+    AC_MSG_RESULT([yes])

-        if test "X$ENABLE_EXPERIMENTAL" = "Xyes"; then
-		CPPFLAGS="$CPPFLAGS -DWITH_PARALLEL_H5GRID"
-        	AC_MSG_CHECKING([for ParMETIS])
-                if test "X$PARMETIS_PREFIX" != "X"; then
-                        CPPFLAGS="$CPPFLAGS -I$PARMETIS_PREFIX/include"
-	                LDFLAGS="$LDFLAGS -L$PARMETIS_PREFIX/lib"
-	        fi
+    CFLAGS="${CFLAGS} -DPARALLEL_IO -DH5_HAVE_PARALLEL -DMPICH_IGNORE_CXX_SEEK"

-                LIBS="$LIBS -lparmetis -lmetis"
-	        AC_TRY_LINK([#include <parmetis.h>], [
-	                ParMETIS_V3_PartGeom (NULL, NULL, NULL, NULL, NULL);],
-		        [AC_MSG_RESULT([yes]); r='yes'], [AC_MSG_RESULT([no]); r='no'] )
+    AC_MSG_CHECKING([if we can compile MPI code without setting flags])
+    AC_TRY_LINK([#include "mpi.h"], [
+        MPI_Comm comm;
+	int n;
+	MPI_Comm_size( comm, &n ); ], 
+	[echo 'yes'; r='yes'], [echo "no"; r='no'] )

-	        if test "X$r" = "Xno"; then
-		        AC_MSG_ERROR([ParMETIS])
-		        exit 1
-	        fi
-        fi
-else  # --enable-parallel=no
-	AC_MSG_RESULT([no])
-fi
+    if test "X$r" = "Xno"; then
+        AC_PATH_PROGS([MPICC], [mpicc mpcc_r], [], [$PATH])
+        AC_PATH_PROGS([MPICXX], [mpicxx mpcc_r], [], [$PATH])
+        if test -z "$MPICC" -o -z "$MPICXX"; then 
+            AC_MSG_CHECKING([for MPI root ])
+            AC_MSG_RESULT([])
+            if test -n "$MPIROOT"; then
+                P=${MPIROOT}
+            elif test -n "$MPIHOME"; then
+                P=${MPIHOME}
+            elif test -n "$MPIPATH"; then
+                P=${MPIPATH}
+            else
+                P=''
+                P="$P /usr"
+                P="$P /usr/local"
+                P="$P /usr/local/mpi"
+                P="$P /usr/local/packages/mpi"
+                P="$P /usr/local/mpich2"
+                P="$P /usr/local/mpich"
+                P="$P /opt/xt-mpt/default/mpich2-64/P2"
+            fi
+            PATH_Search MPIROOT "$P" include/mpi.h
+            if test ! -n "$MPIROOT"; then
+		AC_MSG_ERROR([Cannot determine MPI root!!!])
+                exit 1
+            fi

-###############################################################################
-# LIBRARY PATHS
-if test -z "${HDF5_PREFIX}"; then
-	# alternatives to HDF5_PREFIX
-	if test -n "${HDF5_DIR}"; then
-		HDF5_PREFIX=${HDF5_DIR}
+	    if test -e "${MPIROOT}/bin/mpicc"; then
+	       MPICC=${MPIROOT}/bin/mpicc
+	    fi
+
+	    if test -e "${MPIROOT}/bin/mpicxx"; then
+	       MPICXX=${MPIROOT}/bin/mpicxx
+	    fi
 	fi
-fi
-if test -n "${HDF5_PREFIX}"; then
-        CPPFLAGS="$CPPFLAGS -I$HDF5_PREFIX/include"
-        LDFLAGS="$LDFLAGS -L$HDF5_PREFIX/lib"
-fi
-AC_CHECK_LIB([z], [compress2])
-AC_CHECK_LIB([hdf5], [H5open])
-AS_IF([test "x$ac_cv_lib_hdf5_H5open" != xyes], 
-        [AC_MSG_ERROR([Cannot compile and link a HDF5 program]); 
-        exit 1])

+        if test -z "$MPICC" -o -z "$MPICXX"; then 
+            MPIINC="${MPIINC} -I${MPIROOT}/include"
+            FFLAGS="${FFLAGS} -I${MPIROOT}/include"
+            AC_MSG_CHECKING([for name of MPI lib ])
+            if test -e ${MPIROOT}/lib/libmpi.a; then
+                MPILIB="-L${MPIROOT}/lib -lmpi"
+            elif test -e ${MPIROOT}/lib/libmpi.so; then
+                MPILIB="-L${MPIROOT}/lib -lmpi"
+            elif test -e ${MPIROOT}/lib/libmpich.a; then
+                MPILIB="-L${MPIROOT}/lib -lmpich"
+            elif test -e ${MPIROOT}/lib/libmpich.so; then
+                MPILIB="-L${MPIROOT}/lib -lmpich"
+            else
+                AC_MSG_RESULT([not found])
+                exit 1
+            fi
+            AC_MSG_RESULT([${MPILIB}])
+	fi

-AC_MSG_CHECKING([for lustre API ])
+        if test -n "$MPICC"; then
+	    CC=${MPICC}
+        fi 
+  
+        if test -n "$MPICXX"; then
+	    CXX=${MPICXX}
+        fi
+    fi
+
+    MTARGET="libpH5Part.a"
+    TTARGET="H5PartTestP H5PartAndreasTest Bench"
+    TTARGET="${TTARGET} H5BlockTestAttributes"
+    TTARGET="${TTARGET} H5BlockParTestScalarField"
+
+    # parallel + fortran
+    if test "X$USE_FORTRAN" = "Xyes"; then
+        AC_PATH_PROGS([MPIFC], [mpxlf_r mpif90], [], [$PATH])
+
+	if test -z "${MPIFC}" ; then
+	    if test -e "${MPIROOT}/bin/mpif90"; then
+	       MPIFC=${MPIROOT}/bin/mpif90
+	    fi
+	fi
+ 
+        # if MPIFC empty
+        if test ! -n "$MPIFC"; then
+            AC_MSG_CHECKING([ No MPIFC detected. Setting MPIFC to FC.])
+            MPIFC=$FC
+            echo "MPIFC =  $MPIFC ..."
+        fi 
+
+	if test -n "$MPIFC"; then
+	    FC=${MPIFC}
+	fi
+ 
+        MTARGET="${MTARGET} libpH5PartF.a"
+        TTARGET="${TTARGET} H5testFpar"
+	TTARGET="${TTARGET} H5BlockParTestScalarFieldF"
+    fi
+
+else  # --enable-parallel=no
+    AC_MSG_RESULT([no])
+
+    MTARGET="libH5Part.a"
+    TTARGET="H5PartTest H5test"
+    TTARGET="${TTARGET} H5BlockTestAttributes"
+
+    if test "X$USE_FORTRAN" = "Xyes"; then
+        MTARGET="${MTARGET} libH5PartF.a"
+        TTARGET="${TTARGET} H5testF"
+	TTARGET="${TTARGET} H5BlockTestAttributesF"
+   fi
+fi
+
+AC_MSG_CHECKING([wheter tools are enabled])
+if test "X$USE_TOOLS" = "Xyes"; then
+    AC_MSG_RESULT([yes])
+    BUILD_TOOLS="h5pAttrib h5pToGNUplot # homdynToH5p"
+else
+    AC_MSG_RESULT([no])
+fi
+
+###############################################################################
+######################### PATH CHECKING & SETTING #############################
+###############################################################################
+
+AC_MSG_CHECKING([for HDF5 root ])
 AC_MSG_RESULT([])
-if test -n "${LUSTREPATH}"; then
-	P=${LUSTREPATH}
-elif test -n "${LUSTREROOT}" ; then
-	P=${LUSTREROOT}
-elif test -n "${LUSTREHOME}" ; then
-	P=${LUSTREHOME}
-elif test -n "${LUSTRE_DIR}" ; then
-	P=${LUSTRE_DIR}
+if test -n "${HDF5ROOT}"; then
+    P=${HDF5ROOT}
+elif test -n "${HDF5HOME}" ; then
+    P=${HDF5HOME}
+elif test -n "${HDF5PATH}" ; then
+    P=${HDF5PATH}
 else
-	P=''
-	P="$P /usr"
-	P="$P /usr/local"
-	P="$P /usr/local/lustre"
-	P="$P /opt/lustre"
+    P=''
+    P="$P /usr"
+    P="$P /usr/local"
+    P="$P /usr/local/hdf5"
+    P="$P /usr/local/packages/hdf5"
+    P="$P /apps/hdf5"
+
+    if test "X$USE_PARALLEL" = "Xyes"; then
+        P="$P /usr/local/phdf5"
+        P="$P /usr/local/hdf5/hdf5_par"
+        if test "X$USE_64" = "Xyes"; then
+            P="$P /usr/common/usg/hdf5/64/default/parallel"
+        else
+            P="$P /usr/common/usg/hdf5/32/default/parallel"
+        fi
+    else
+        P="$P /usr/local/hdf5/hdf5_serial"
+        if test "X$USE_64" = "Xyes"; then
+            P="$P /usr/common/usg/hdf5/64/default/serial"
+        else
+            P="$P /usr/common/usg/hdf5/32/default/serial"
+        fi
+    fi
 fi
-PATH_Search LUSTREROOT "$P" usr/include/lustre/liblustreapi.h
-if test -z "$LUSTREROOT"; then
-	AC_MSG_WARN([Couldn't locate the lustre API... building without support for lustre striping!])
-else
-        CFLAGS="$CFLAGS -DH5_USE_LUSTRE"
-        CPPFLAGS="$CPPFLAGS -I$LUSTREROOT/usr/include"
-        LDFLAGS="$LDFLAGS -L$LUSTREROOT/usr/lib"
-        LIBS="$LIBS -llustreapi"
+PATH_Search HDF5ROOT "$P" include/hdf5.h
+if test -z "$HDF5ROOT"; then
+    AC_MSG_ERROR([Cannot determine HDF5 root!!!])
+    exit 1
 fi

-LIBS="$LIBS -lm"
-
-###############################################################################
-# TOOLS
-AC_MSG_CHECKING([if we have to compile the VTK to H5hut grid converter])
-if test "X$ENABLE_VTKCONVERTER" = "Xyes"; then
+AC_MSG_CHECKING([if we need to link to libsz ])
+if test -n "$HDF5ROOT"; then
+    if test -f $HDF5ROOT/lib/libsz.a; then
 	AC_MSG_RESULT([yes])
-        # :TODO: add test whether we can compile/link a prog with vtk
-else
+        SZLIB="-L$HDF5ROOT/lib/ -lsz"
+    else
 	AC_MSG_RESULT([no])
+        SZLIB=""
+    fi
+fi
+
+AC_MSG_CHECKING([for static zlib root ])
+echo
+PATH_Search ZLIBROOT '/apps/zlib' lib/libz.a
+if test -n "$ZLIBROOT"; then
+    LDFLAGS="$LDFLAGS -L$ZLIBROOT/lib"
+fi
+
+
+###############################################################################
+#################### MISC SETTINGS - path, flags, etc #########################
+###############################################################################
+
+H5P_LIB_LOC=`pwd`/src
+
+###############################################################################
+################# A SIMPLE WORK AROUND TO USE ENV. VARS #######################
+###############################################################################
+
+#if there was an external input for the variable...
+if test -n "$SAVE_CC"; then
+CC=$SAVE_CC
+fi
+
+if test -n "$SAVE_CXX"; then
+CXX=$SAVE_CXX
+fi
+
+if test -n "$SAVE_FC"; then
+FC=$SAVE_FC
+fi
+
+if test -n "$SAVE_MPICC"; then
+MPICC=$SAVE_MPICC
+fi
+
+if test -n "$SAVE_MPICXX"; then
+MPICXX=$SAVE_MPICXX
+fi
+
+if test -n "$SAVE_MPIFC"; then
+MPIFC=$SAVE_MPIFC
+fi
+
+if test -n "$SAVE_MPILIB"; then
+MPILIB=$SAVE_MPILIB
+fi
+
+if test -n "$SAVE_MPIINC"; then
+MPIINC=$SAVE_MPIINC
+fi
+
+if test -n "$SAVE_CFLAGS"; then
+CFLAGS="$SAVE_CFLAGS ${CFLAGS}"
+fi
+
+if test -n "$SAVE_FFLAGS"; then
+FFLAGS=$SAVE_FFLAGS
+fi
+
+if test -n "$SAVE_MPIROOT"; then
+MPIROOT=$SAVE_MPIROOT
+fi
+
+if test -n "$SAVE_HDF5ROOT"; then
+HDF5ROOT=$SAVE_HDF5ROOT
+fi
+
+if test -n "$SAVE_LDFLAGS"; then
+LDFLAGS=$SAVE_LDFLAGS
+fi
+
+if test -n "$MPICXX"; then
+TOOLS_CXX=$MPICXX
+TOOLS_H5PART_LIB="-lpH5Part"
+TOOLS_HDFLIB="-L$HDF5ROOT/lib -lhdf5"
+else
+TOOLS_CXX=$CXX
+TOOLS_H5PART_LIB="-lH5Part"
+TOOLS_HDFLIB="-L$HDF5ROOT/lib -lhdf5"
 fi

 ###############################################################################
-# EXAMPLES
-AC_MSG_CHECKING([if we have to compile the H5hut examples])
-if test "X$ENABLE_EXAMPLES" = "Xyes"; then
-	AC_MSG_RESULT([yes])
-else
-	AC_MSG_RESULT([no])
-fi
-
+############## EXPORTING VARIABLES & CREATING OUTPUT FILES ####################
 ###############################################################################
-# EXPORTING VARIABLES & CREATING OUTPUT FILES
-AM_CPPFLAGS=$CPPFLAGS
-AM_LDFLAGS=$LDFLAGS
-
-AC_SUBST(HDF5_PREFIX)
+# AC_SUBST (variable, [value])
+# Create an output variable from a shell variable. 
+# Make AC_OUTPUT substitute the variable variable into output files (typically one or more `Makefile's). 
+# This means that AC_OUTPUT will replace instances of `@variable@' in input files with the value that 
+# the shell variable variable has when AC_OUTPUT is called. 
+# This value of variable should not contain literal newlines.
+# If value is given, in addition assign it to variable. 
+AC_SUBST(MPIROOT)
+AC_SUBST(HDF5ROOT)
+AC_SUBST(MPIINC)
+AC_SUBST(MPILIB)
+AC_SUBST(MPICC)
+AC_SUBST(MPICXX)
+AC_SUBST(MPIFC)
+AC_SUBST(MTARGET)
+AC_SUBST(TTARGET)
+AC_SUBST(SZLIB)
 AC_SUBST(CFLAGS)
 AC_SUBST(FFLAGS)
-AC_SUBST(AM_CPPFLAGS)
-AC_SUBST(AM_LDFLAGS)
+AC_SUBST(STDCXX)
+AC_SUBST(H5P_LIB_LOC)
+AC_SUBST(UNDERSCORE_H)
+AC_SUBST(BUILD_TOOLS)
+AC_SUBST(LDFLAGS)
+AC_SUBST(TOOLS_CXX)
+AC_SUBST(TOOLS_H5PART_LIB)
+AC_SUBST(TOOLS_HDFLIB)

+# Make AC_OUTPUT create each `file' by copying an input file (by default `file.in'),
+# substituting the output variable values.
 AC_CONFIG_FILES([
-	Makefile
-	src/Makefile
-	src/h5core/Makefile
-	src/include/Makefile
-	src/include/h5core/Makefile
-        src/C/Makefile
-        src/Fortran/Makefile
-        src/Python/Makefile
-	test/Makefile
-        doc/Makefile
-	tools/Makefile
-	tools/h5hutcc
-        tools/vtk2h5grid/Makefile
-        examples/H5/Makefile
-        examples/H5Part/Makefile
-        examples/H5Block/Makefile
-        examples/H5Fed/Makefile
+Makefile
+doc/Makefile
+src/Makefile
+test/Makefile
+tools/Makefile
 ])

 AC_OUTPUT

 ###############################################################################
-# PRINTING SUMMARY
-AC_MSG_RESULT([ ])
-AC_MSG_RESULT([Summary:])
-AC_MSG_RESULT([ ])
-AC_MSG_RESULT([Host OS:             $host_os])
-AC_MSG_RESULT([Host CPU:            $host_cpu])
-AC_MSG_RESULT([Host vendor:         $host_vendor])
-AC_MSG_RESULT([CC =                 $CC])
-AC_MSG_RESULT([CXX =                $CXX])
-AC_MSG_RESULT([FC =                 $FC])
-AC_MSG_RESULT([CFLAGS =             $CFLAGS])
-AC_MSG_RESULT([FFLAGS =             $FFLAGS])
-AC_MSG_RESULT([AM_CPPFLAGS =        $AM_CPPFLAGS])
-AC_MSG_RESULT([AM_LDFLAGS =         $AM_LDFLAGS])
-AC_MSG_RESULT([LIBS =               $LIBS])
-AC_MSG_RESULT([HDF5_PREFIX =        $HDF5_PREFIX])
-AC_MSG_RESULT([LUSTREROOT =         $LUSTREROOT])
-
-if test "x$ENABLE_PYTHON" = "xyes"; then
-	AC_MSG_RESULT([PYTHON =             $PYTHON])
-	AC_MSG_RESULT([SWIG =               $SWIG])
-	AC_MSG_RESULT([NUMPY_INCLUDE =      $NUMPY_INCLUDE])
-	if test "x$ENABLE_PARALLEL" = "xyes"; then
-		AC_MSG_RESULT([MPI4PY_INCLUDE =     $MPI4PY_INCLUDE])
-	fi
-fi
-AC_MSG_RESULT([ ])
+########################## PRINTING SUMMARY ###################################
+###############################################################################
+echo
+echo
+echo "Summary for `(hostname || uname -n) 2>/dev/null | sed 1q`:"
+echo
+echo "Host OS:             $host_os"
+echo "Host CPU:            $host_cpu"
+echo "Host vendor:         $host_vendor"
+echo "Build libraries:     $MTARGET"
+echo "Build test programs: $TTARGET"
+echo "Build tools:         $BUILD_TOOLS"
+echo "CC =                 $CC"
+echo "CXX =                $CXX"
+echo "FC =                 $FC"
+echo "MPICC =              $MPICC"
+echo "MPICXX =             $MPICXX"
+echo "MPIFC =              $MPIFC"
+echo "CFLAGS =             $CFLAGS"
+echo "FFLAGS =             $FFLAGS"
+echo "MPILIB =             $MPILIB"
+echo "MPIINC =             $MPIINC"
+echo "MPIROOT =            $MPIROOT"
+echo "HDF5ROOT =           $HDF5ROOT"
+echo "LDFLAGS =            $LDFLAGS"
+echo
@@ -0,0 +1,529 @@
+#! /bin/sh
+# depcomp - compile a program generating dependencies as side-effects
+
+scriptversion=2005-02-09.22
+
+# Copyright (C) 1999, 2000, 2003, 2004, 2005 Free Software Foundation, Inc.
+
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
+# 02111-1307, USA.
+
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+# Originally written by Alexandre Oliva <oliva@dcc.unicamp.br>.
+
+case $1 in
+  '')
+     echo "$0: No command.  Try \`$0 --help' for more information." 1>&2
+     exit 1;
+     ;;
+  -h | --h*)
+    cat <<\EOF
+Usage: depcomp [--help] [--version] PROGRAM [ARGS]
+
+Run PROGRAMS ARGS to compile a file, generating dependencies
+as side-effects.
+
+Environment variables:
+  depmode     Dependency tracking mode.
+  source      Source file read by `PROGRAMS ARGS'.
+  object      Object file output by `PROGRAMS ARGS'.
+  DEPDIR      directory where to store dependencies.
+  depfile     Dependency file to output.
+  tmpdepfile  Temporary file to use when outputing dependencies.
+  libtool     Whether libtool is used (yes/no).
+
+Report bugs to <bug-automake@gnu.org>.
+EOF
+    exit $?
+    ;;
+  -v | --v*)
+    echo "depcomp $scriptversion"
+    exit $?
+    ;;
+esac
+
+if test -z "$depmode" || test -z "$source" || test -z "$object"; then
+  echo "depcomp: Variables source, object and depmode must be set" 1>&2
+  exit 1
+fi
+
+# Dependencies for sub/bar.o or sub/bar.obj go into sub/.deps/bar.Po.
+depfile=${depfile-`echo "$object" |
+  sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`}
+tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`}
+
+rm -f "$tmpdepfile"
+
+# Some modes work just like other modes, but use different flags.  We
+# parameterize here, but still list the modes in the big case below,
+# to make depend.m4 easier to write.  Note that we *cannot* use a case
+# here, because this file can only contain one case statement.
+if test "$depmode" = hp; then
+  # HP compiler uses -M and no extra arg.
+  gccflag=-M
+  depmode=gcc
+fi
+
+if test "$depmode" = dashXmstdout; then
+   # This is just like dashmstdout with a different argument.
+   dashmflag=-xM
+   depmode=dashmstdout
+fi
+
+case "$depmode" in
+gcc3)
+## gcc 3 implements dependency tracking that does exactly what
+## we want.  Yay!  Note: for some reason libtool 1.4 doesn't like
+## it if -MD -MP comes after the -MF stuff.  Hmm.
+  "$@" -MT "$object" -MD -MP -MF "$tmpdepfile"
+  stat=$?
+  if test $stat -eq 0; then :
+  else
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  mv "$tmpdepfile" "$depfile"
+  ;;
+
+gcc)
+## There are various ways to get dependency output from gcc.  Here's
+## why we pick this rather obscure method:
+## - Don't want to use -MD because we'd like the dependencies to end
+##   up in a subdir.  Having to rename by hand is ugly.
+##   (We might end up doing this anyway to support other compilers.)
+## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like
+##   -MM, not -M (despite what the docs say).
+## - Using -M directly means running the compiler twice (even worse
+##   than renaming).
+  if test -z "$gccflag"; then
+    gccflag=-MD,
+  fi
+  "$@" -Wp,"$gccflag$tmpdepfile"
+  stat=$?
+  if test $stat -eq 0; then :
+  else
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+  echo "$object : \\" > "$depfile"
+  alpha=ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz
+## The second -e expression handles DOS-style file names with drive letters.
+  sed -e 's/^[^:]*: / /' \
+      -e 's/^['$alpha']:\/[^:]*: / /' < "$tmpdepfile" >> "$depfile"
+## This next piece of magic avoids the `deleted header file' problem.
+## The problem is that when a header file which appears in a .P file
+## is deleted, the dependency causes make to die (because there is
+## typically no way to rebuild the header).  We avoid this by adding
+## dummy dependencies for each header file.  Too bad gcc doesn't do
+## this for us directly.
+  tr ' ' '
+' < "$tmpdepfile" |
+## Some versions of gcc put a space before the `:'.  On the theory
+## that the space means something, we add a space to the output as
+## well.
+## Some versions of the HPUX 10.20 sed can't process this invocation
+## correctly.  Breaking it into two sed invocations is a workaround.
+    sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+hp)
+  # This case exists only to let depend.m4 do its work.  It works by
+  # looking at the text of this script.  This case will never be run,
+  # since it is checked for above.
+  exit 1
+  ;;
+
+sgi)
+  if test "$libtool" = yes; then
+    "$@" "-Wp,-MDupdate,$tmpdepfile"
+  else
+    "$@" -MDupdate "$tmpdepfile"
+  fi
+  stat=$?
+  if test $stat -eq 0; then :
+  else
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+
+  if test -f "$tmpdepfile"; then  # yes, the sourcefile depend on other files
+    echo "$object : \\" > "$depfile"
+
+    # Clip off the initial element (the dependent).  Don't try to be
+    # clever and replace this with sed code, as IRIX sed won't handle
+    # lines with more than a fixed number of characters (4096 in
+    # IRIX 6.2 sed, 8192 in IRIX 6.5).  We also remove comment lines;
+    # the IRIX cc adds comments like `#:fec' to the end of the
+    # dependency line.
+    tr ' ' '
+' < "$tmpdepfile" \
+    | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' | \
+    tr '
+' ' ' >> $depfile
+    echo >> $depfile
+
+    # The second pass generates a dummy entry for each header file.
+    tr ' ' '
+' < "$tmpdepfile" \
+   | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' -e 's/$/:/' \
+   >> $depfile
+  else
+    # The sourcefile does not contain any dependencies, so just
+    # store a dummy comment line, to avoid errors with the Makefile
+    # "include basename.Plo" scheme.
+    echo "#dummy" > "$depfile"
+  fi
+  rm -f "$tmpdepfile"
+  ;;
+
+aix)
+  # The C for AIX Compiler uses -M and outputs the dependencies
+  # in a .u file.  In older versions, this file always lives in the
+  # current directory.  Also, the AIX compiler puts `$object:' at the
+  # start of each line; $object doesn't have directory information.
+  # Version 6 uses the directory in both cases.
+  stripped=`echo "$object" | sed 's/\(.*\)\..*$/\1/'`
+  tmpdepfile="$stripped.u"
+  if test "$libtool" = yes; then
+    "$@" -Wc,-M
+  else
+    "$@" -M
+  fi
+  stat=$?
+
+  if test -f "$tmpdepfile"; then :
+  else
+    stripped=`echo "$stripped" | sed 's,^.*/,,'`
+    tmpdepfile="$stripped.u"
+  fi
+
+  if test $stat -eq 0; then :
+  else
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+
+  if test -f "$tmpdepfile"; then
+    outname="$stripped.o"
+    # Each line is of the form `foo.o: dependent.h'.
+    # Do two passes, one to just change these to
+    # `$object: dependent.h' and one to simply `dependent.h:'.
+    sed -e "s,^$outname:,$object :," < "$tmpdepfile" > "$depfile"
+    sed -e "s,^$outname: \(.*\)$,\1:," < "$tmpdepfile" >> "$depfile"
+  else
+    # The sourcefile does not contain any dependencies, so just
+    # store a dummy comment line, to avoid errors with the Makefile
+    # "include basename.Plo" scheme.
+    echo "#dummy" > "$depfile"
+  fi
+  rm -f "$tmpdepfile"
+  ;;
+
+icc)
+  # Intel's C compiler understands `-MD -MF file'.  However on
+  #    icc -MD -MF foo.d -c -o sub/foo.o sub/foo.c
+  # ICC 7.0 will fill foo.d with something like
+  #    foo.o: sub/foo.c
+  #    foo.o: sub/foo.h
+  # which is wrong.  We want:
+  #    sub/foo.o: sub/foo.c
+  #    sub/foo.o: sub/foo.h
+  #    sub/foo.c:
+  #    sub/foo.h:
+  # ICC 7.1 will output
+  #    foo.o: sub/foo.c sub/foo.h
+  # and will wrap long lines using \ :
+  #    foo.o: sub/foo.c ... \
+  #     sub/foo.h ... \
+  #     ...
+
+  "$@" -MD -MF "$tmpdepfile"
+  stat=$?
+  if test $stat -eq 0; then :
+  else
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+  # Each line is of the form `foo.o: dependent.h',
+  # or `foo.o: dep1.h dep2.h \', or ` dep3.h dep4.h \'.
+  # Do two passes, one to just change these to
+  # `$object: dependent.h' and one to simply `dependent.h:'.
+  sed "s,^[^:]*:,$object :," < "$tmpdepfile" > "$depfile"
+  # Some versions of the HPUX 10.20 sed can't process this invocation
+  # correctly.  Breaking it into two sed invocations is a workaround.
+  sed 's,^[^:]*: \(.*\)$,\1,;s/^\\$//;/^$/d;/:$/d' < "$tmpdepfile" |
+    sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+tru64)
+   # The Tru64 compiler uses -MD to generate dependencies as a side
+   # effect.  `cc -MD -o foo.o ...' puts the dependencies into `foo.o.d'.
+   # At least on Alpha/Redhat 6.1, Compaq CCC V6.2-504 seems to put
+   # dependencies in `foo.d' instead, so we check for that too.
+   # Subdirectories are respected.
+   dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
+   test "x$dir" = "x$object" && dir=
+   base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
+
+   if test "$libtool" = yes; then
+      # With Tru64 cc, shared objects can also be used to make a
+      # static library.  This mecanism is used in libtool 1.4 series to
+      # handle both shared and static libraries in a single compilation.
+      # With libtool 1.4, dependencies were output in $dir.libs/$base.lo.d.
+      #
+      # With libtool 1.5 this exception was removed, and libtool now
+      # generates 2 separate objects for the 2 libraries.  These two
+      # compilations output dependencies in in $dir.libs/$base.o.d and
+      # in $dir$base.o.d.  We have to check for both files, because
+      # one of the two compilations can be disabled.  We should prefer
+      # $dir$base.o.d over $dir.libs/$base.o.d because the latter is
+      # automatically cleaned when .libs/ is deleted, while ignoring
+      # the former would cause a distcleancheck panic.
+      tmpdepfile1=$dir.libs/$base.lo.d   # libtool 1.4
+      tmpdepfile2=$dir$base.o.d          # libtool 1.5
+      tmpdepfile3=$dir.libs/$base.o.d    # libtool 1.5
+      tmpdepfile4=$dir.libs/$base.d      # Compaq CCC V6.2-504
+      "$@" -Wc,-MD
+   else
+      tmpdepfile1=$dir$base.o.d
+      tmpdepfile2=$dir$base.d
+      tmpdepfile3=$dir$base.d
+      tmpdepfile4=$dir$base.d
+      "$@" -MD
+   fi
+
+   stat=$?
+   if test $stat -eq 0; then :
+   else
+      rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
+      exit $stat
+   fi
+
+   for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
+   do
+     test -f "$tmpdepfile" && break
+   done
+   if test -f "$tmpdepfile"; then
+      sed -e "s,^.*\.[a-z]*:,$object:," < "$tmpdepfile" > "$depfile"
+      # That's a tab and a space in the [].
+      sed -e 's,^.*\.[a-z]*:[	 ]*,,' -e 's,$,:,' < "$tmpdepfile" >> "$depfile"
+   else
+      echo "#dummy" > "$depfile"
+   fi
+   rm -f "$tmpdepfile"
+   ;;
+
+#nosideeffect)
+  # This comment above is used by automake to tell side-effect
+  # dependency tracking mechanisms from slower ones.
+
+dashmstdout)
+  # Important note: in order to support this mode, a compiler *must*
+  # always write the preprocessed file to stdout, regardless of -o.
+  "$@" || exit $?
+
+  # Remove the call to Libtool.
+  if test "$libtool" = yes; then
+    while test $1 != '--mode=compile'; do
+      shift
+    done
+    shift
+  fi
+
+  # Remove `-o $object'.
+  IFS=" "
+  for arg
+  do
+    case $arg in
+    -o)
+      shift
+      ;;
+    $object)
+      shift
+      ;;
+    *)
+      set fnord "$@" "$arg"
+      shift # fnord
+      shift # $arg
+      ;;
+    esac
+  done
+
+  test -z "$dashmflag" && dashmflag=-M
+  # Require at least two characters before searching for `:'
+  # in the target name.  This is to cope with DOS-style filenames:
+  # a dependency such as `c:/foo/bar' could be seen as target `c' otherwise.
+  "$@" $dashmflag |
+    sed 's:^[  ]*[^: ][^:][^:]*\:[    ]*:'"$object"'\: :' > "$tmpdepfile"
+  rm -f "$depfile"
+  cat < "$tmpdepfile" > "$depfile"
+  tr ' ' '
+' < "$tmpdepfile" | \
+## Some versions of the HPUX 10.20 sed can't process this invocation
+## correctly.  Breaking it into two sed invocations is a workaround.
+    sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+dashXmstdout)
+  # This case only exists to satisfy depend.m4.  It is never actually
+  # run, as this mode is specially recognized in the preamble.
+  exit 1
+  ;;
+
+makedepend)
+  "$@" || exit $?
+  # Remove any Libtool call
+  if test "$libtool" = yes; then
+    while test $1 != '--mode=compile'; do
+      shift
+    done
+    shift
+  fi
+  # X makedepend
+  shift
+  cleared=no
+  for arg in "$@"; do
+    case $cleared in
+    no)
+      set ""; shift
+      cleared=yes ;;
+    esac
+    case "$arg" in
+    -D*|-I*)
+      set fnord "$@" "$arg"; shift ;;
+    # Strip any option that makedepend may not understand.  Remove
+    # the object too, otherwise makedepend will parse it as a source file.
+    -*|$object)
+      ;;
+    *)
+      set fnord "$@" "$arg"; shift ;;
+    esac
+  done
+  obj_suffix="`echo $object | sed 's/^.*\././'`"
+  touch "$tmpdepfile"
+  ${MAKEDEPEND-makedepend} -o"$obj_suffix" -f"$tmpdepfile" "$@"
+  rm -f "$depfile"
+  cat < "$tmpdepfile" > "$depfile"
+  sed '1,2d' "$tmpdepfile" | tr ' ' '
+' | \
+## Some versions of the HPUX 10.20 sed can't process this invocation
+## correctly.  Breaking it into two sed invocations is a workaround.
+    sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile" "$tmpdepfile".bak
+  ;;
+
+cpp)
+  # Important note: in order to support this mode, a compiler *must*
+  # always write the preprocessed file to stdout.
+  "$@" || exit $?
+
+  # Remove the call to Libtool.
+  if test "$libtool" = yes; then
+    while test $1 != '--mode=compile'; do
+      shift
+    done
+    shift
+  fi
+
+  # Remove `-o $object'.
+  IFS=" "
+  for arg
+  do
+    case $arg in
+    -o)
+      shift
+      ;;
+    $object)
+      shift
+      ;;
+    *)
+      set fnord "$@" "$arg"
+      shift # fnord
+      shift # $arg
+      ;;
+    esac
+  done
+
+  "$@" -E |
+    sed -n '/^# [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' |
+    sed '$ s: \\$::' > "$tmpdepfile"
+  rm -f "$depfile"
+  echo "$object : \\" > "$depfile"
+  cat < "$tmpdepfile" >> "$depfile"
+  sed < "$tmpdepfile" '/^$/d;s/^ //;s/ \\$//;s/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+msvisualcpp)
+  # Important note: in order to support this mode, a compiler *must*
+  # always write the preprocessed file to stdout, regardless of -o,
+  # because we must use -o when running libtool.
+  "$@" || exit $?
+  IFS=" "
+  for arg
+  do
+    case "$arg" in
+    "-Gm"|"/Gm"|"-Gi"|"/Gi"|"-ZI"|"/ZI")
+	set fnord "$@"
+	shift
+	shift
+	;;
+    *)
+	set fnord "$@" "$arg"
+	shift
+	shift
+	;;
+    esac
+  done
+  "$@" -E |
+  sed -n '/^#line [0-9][0-9]* "\([^"]*\)"/ s::echo "`cygpath -u \\"\1\\"`":p' | sort | uniq > "$tmpdepfile"
+  rm -f "$depfile"
+  echo "$object : \\" > "$depfile"
+  . "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s::	\1 \\:p' >> "$depfile"
+  echo "	" >> "$depfile"
+  . "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s::\1\::p' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+none)
+  exec "$@"
+  ;;
+
+*)
+  echo "Unknown depmode $depmode" 1>&2
+  exit 1
+  ;;
+esac
+
+exit 0
+
+# Local Variables:
+# mode: shell-script
+# sh-indentation: 2
+# eval: (add-hook 'write-file-hooks 'time-stamp)
+# time-stamp-start: "scriptversion="
+# time-stamp-format: "%:y-%02m-%02d.%02H"
+# time-stamp-end: "$"
+# End:
@@ -1,77 +0,0 @@
-NumLevels: 2
-
-NumVerticesOnLevel: 11 20 29
-
-Vertices:
-1	  0.0	  0.0
-2	 60.0	-70.0
-3	 90.0	-10.0
-4	140.0	-70.0
-5	180.0	-10.0
-6	240.0	-60.0
-7	220.0	 60.0
-8	140.0	 90.0
-9	200.0	120.0
-10	130.0	150.0
-11	 50.0	 80.0
-12	115.0	 40.0
-13	 95.0	 85.0
-14	 70.0	 35.0
-15	160.0	-40.0
-16	135.0	-10.0
-17	115.0	-40.0
-18	200.0	 25.0	
-19	180.0	 75.0
-20	160.0	 40.0
-
-21	125.0	 15.0
-22	112.5	-10.0
-23	102.5	 15.0
-24	147.5	 15.0
-25	137.5	 40.0
-26	150.0	 65.0
-27	127.5	 65.0
-28	117.5	 87.5
-29	105.0	 62.5
-
-NumElemsOnLevel: 12 24 36
-NumElems: 12 28 44
-
-Elements:
-ID	PID	CID	VertexIDs	Adj		Translation Tbl (dim num lvls - 1)
-1	-1	-1	1 2 3		2 11 -1		1
-2	-1	-1	2 3 4		3 -1 1		2
-3	-1	12	3 4 5		4 12 2		-1
-4	-1	-1	4 5 6		5 -1 3		3
-5	-1	-1	5 7 6		-1 4 6		4
-6	-1	17	8 5 7		5 7 12		-1
-7	-1	-1	8 9 7		-1 6 8		5
-8	-1	-1	10 8 9		7 -1 9		6
-9	-1	-1	11 10 8		8 10 -1		7
-10	-1	25	11 3 8		12 9 11		-1
-11	-1	-1	1 11 3		10 1 -1		8
-12	-1	21	3 8 5		6 3 10		-1
-13	3	-1	3 14 13		16 21 2		9
-14	3	-1	14 4 12		4 16 2		10
-15	3	-1	13 12 5		4 23 16		11
-16	3	-1	14 13 12	15 14 13	12
-17	6	-1	8 17 16		20 5 22		13
-18	6	-1	17 5 15		5 20 23		14
-19	6	-1	16 15 7		5 7 20		15
-20	6	-1	17 16 15	19 18 17	16
-21	12	-1	3 18 13		24 13 26	17
-22	12	-1	18 8 17		17 24 27	18
-23	12	-1	13 17 5		18 15 24	19
-24	12	-1	18 13 17	23 22 21	20
-25	10	-1	11 20 19	28 9 11		21
-26	10	-1	20 3 18		21 28 11	22
-27	10	-1	19 18 8		22 9 28		23
-28	10	-1	20 3 18		27 26 25	24
-
-3,0 3,1 4,2 2,3 16,4
-
-1 2 -1 3 4
-
-1    2       3
-1    3       6
-2 11 1 13 14 
@@ -1,107 +0,0 @@
-# vtk DataFile Version 2.0
-VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
-ASCII
-DATASET UNSTRUCTURED_GRID
-
-POINTS 17 DOUBLE
-1 0 0
-1 0 0
-0 1 0
-0 0 1
-0 -1 0
-0.5 0 0.5
-0.5 0.5 0
-0 0 0
-0 0.5 0.5
-0.5 0 0.5
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-0.75 0 0.25
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-0.25 0 0.25
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-
-CELLS 18 90
-4	0 3 2 1
-4	0 4 3 1
-4	0 5 6 7
-4	5 3 8 9
-4	6 8 2 10
-4	7 9 10 1
-4	5 6 7 9
-4	5 6 8 9
-4	6 7 9 10
-4	6 8 9 10
-4	0 11 12 13
-4	11 5 14 15
-4	12 14 6 16
-4	13 15 16 7
-4	11 12 13 15
-4	11 12 14 15
-4	12 13 15 16
-4	12 14 15 16
-
-CELL_TYPES 18
-10
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-POINT_DATA 17
-SCALARS vertex_id int 1
-LOOKUP_TABLE default
-0
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-CELL_DATA 18
-SCALARS cell_attribute_data int 1
-LOOKUP_TABLE default
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@@ -1,59 +0,0 @@
-# vtk DataFile Version 2.0
-VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
-ASCII
-DATASET UNSTRUCTURED_GRID
-
-POINTS 17 DOUBLE
-1 0 0
-1 0 0
-0 1 0
-0 0 1
-0 -1 0
-0.5 0 0.5
-0.5 0.5 0
-0 0 0
-0 0.5 0.5
-0.5 0 0.5
-0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
-
-CELLS 2 10
-4	0 3 2 1
-4	0 4 3 1
-
-CELL_TYPES 2
-10
-10
-
-POINT_DATA 17
-SCALARS vertex_id int 1
-LOOKUP_TABLE default
-0
-1
-2
-3
-4
-5
-6
-7
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-
-CELL_DATA 2
-SCALARS cell_attribute_data int 1
-LOOKUP_TABLE default
-0
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@@ -1,80 +0,0 @@
-# vtk DataFile Version 2.0
-VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
-ASCII
-DATASET UNSTRUCTURED_GRID
-
-POINTS 17 DOUBLE
-1 0 0
-1 0 0
-0 1 0
-0 0 1
-0 -1 0
-0.5 0 0.5
-0.5 0.5 0
-0 0 0
-0 0.5 0.5
-0.5 0 0.5
-0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
-
-CELLS 9 45
-4	0 4 3 1
-4	0 5 6 7
-4	5 3 8 9
-4	6 8 2 10
-4	7 9 10 1
-4	5 6 7 9
-4	5 6 8 9
-4	6 7 9 10
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-
-CELL_TYPES 9
-10
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-
-POINT_DATA 17
-SCALARS vertex_id int 1
-LOOKUP_TABLE default
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-13
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-
-CELL_DATA 9
-SCALARS cell_attribute_data int 1
-LOOKUP_TABLE default
-0
-1
-2
-3
-4
-5
-6
-7
-8
-
@@ -1,101 +0,0 @@
-# vtk DataFile Version 2.0
-VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
-ASCII
-DATASET UNSTRUCTURED_GRID
-
-POINTS 17 DOUBLE
-1 0 0
-1 0 0
-0 1 0
-0 0 1
-0 -1 0
-0.5 0 0.5
-0.5 0.5 0
-0 0 0
-0 0.5 0.5
-0.5 0 0.5
-0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
-
-CELLS 16 80
-4	0 4 3 1
-4	5 3 8 9
-4	6 8 2 10
-4	7 9 10 1
-4	5 6 7 9
-4	5 6 8 9
-4	6 7 9 10
-4	6 8 9 10
-4	0 11 12 13
-4	11 5 14 15
-4	12 14 6 16
-4	13 15 16 7
-4	11 12 13 15
-4	11 12 14 15
-4	12 13 15 16
-4	12 14 15 16
-
-CELL_TYPES 16
-10
-10
-10
-10
-10
-10
-10
-10
-10
-10
-10
-10
-10
-10
-10
-10
-
-POINT_DATA 17
-SCALARS vertex_id int 1
-LOOKUP_TABLE default
-0
-1
-2
-3
-4
-5
-6
-7
-8
-9
-10
-11
-12
-13
-14
-15
-16
-
-CELL_DATA 16
-SCALARS cell_attribute_data int 1
-LOOKUP_TABLE default
-1
-3
-4
-5
-6
-7
-8
-9
-10
-11
-12
-13
-14
-15
-16
-17
-
@@ -1,13 +0,0 @@
-12 14
-2 11
-1 3
-2 4 12
-3 5
-4 6
-5 7 12
-6 8
-7 9
-8 10
-9 11 12
-1 10
-3 6 10
@@ -1,12 +0,0 @@
-0
-1
-1
-1
-1
-1
-0
-0
-0
-0
-0
-1
@@ -1,12 +0,0 @@
-1
-1
-2
-2
-2
-0
-0
-0
-0
-1
-1
-2
@@ -1,49 +0,0 @@
-24 35
-%1
-2 8
-%2
-1 9 10
-%3
-4 10 11
-%4
-3 14 15
-%5
-6 13 15
-%6
-5 7
-%7
-6 21 23
-%8
-1 21 22
-%9
-2 12 17
-%10
-2 3 12
-%11
-3 12 19
-%12
-9 10 11
-%13
-5 16 18
-%14
-4 16 19
-%15
-4 5 16
-%16
-13 14 15
-%17
-9 20 22
-%18
-13 20 23
-%19
-11 14 20
-%20
-17 18 19
-%21
-7 8 24
-%22
-8 17 24
-%23
-7 18 24
-%24
-21 22 23
@@ -1,24 +0,0 @@
-1
-1
-0
-0
-0
-0
-1
-1
-1
-1
-0
-1
-0
-0
-0
-0
-1
-0
-0
-0
-1
-1
-1
-1
@@ -1,13 +0,0 @@
-12 1
-1 2 3
-2 3 4
-3 4 6
-4 5 6
-5 6 7
-6 7 8
-7 8 11
-8 10 11
-8 9 10
-3 8 9
-1 3 9
-3 6 8
@@ -1,12 +0,0 @@
-1
-1
-1
-1
-0
-0
-0
-0
-0
-0
-1
-1
@@ -1,12 +0,0 @@
-11 22
- 2 3 9
- 1 3 4
- 1 2 4 6 8 9
- 2 3 6 5
- 4 6 7
- 3 4 5 7 8
- 5 6 8 11
- 6 7 11 10 9 3
- 8 10 3 1
- 8 11 9
- 7 8 10
@@ -1,11 +0,0 @@
-1
-1
-1
-1
-1
-0
-0
-0
-0
-0
-0
@@ -1,41 +0,0 @@
-20 43
-%1
-2 3 11
-%2
-1 3 4
-%3
-1 2 14 13 18 20
-%4
-2 14 12 6
-%5
-12 6 15 17 13
-%6
-4 5 7
-%7
-6 15 16 9
-%8
-9 10 19 18 17 16
-%9
-7 8 10
-%10
-8 9 11
-%11
-1 20 19 10
-%12
-4 14 13 5
-%13
-3 14 12 5 17 18
-%14
-3 13 12 4
-%15
-5 17 17 7
-%16
-7 8 17 15
-%17
-5 15 16 8 18 13
-%18
-3 13 17 8 19 20
-%19
-8 11 20 18
-%20
-3 18 19 11
@@ -1,20 +0,0 @@
-1
-1
-1
-0
-0
-0
-0
-1
-1
-1
-1
-0
-0
-0
-0
-0
-0
-1
-1
-1
@@ -1,171 +0,0 @@
-/*!
-\mainpage H5hut: A High-Performance I/O Library for Particle-based Simulations
-
-Particle-based simulations running on large high-performance computing systems
-over many time steps can generate an enormous amount of particle- and
-field-based data for post-processing and analysis. Achieving high-performance
-I/O for this data, effectively managing it on disk, and interfacing it with
-analysis and visualization tools can be challenging, especially for domain
-scientists who do not have I/O and data management expertise. We present the
-H5hut library, an implementation of several data models for particle-based
-simulations that encapsulates the complexity of HDF5 and is simple to use, yet
-does not compromise performance.
-
-Developers:
-
-<UL>
-<LI> Andreas Adelmann (PSI) </LI>
-<LI> Achim Gsell (PSI) </LI>
-<LI> Mark Howison (NERSC/LBNL) </LI>
-<LI> Prabhat (NERSC/LBNL) </LI>
-<LI> Wes Bethel (NERSC/LBNL) </LI>
-</UL>
-
-Previous developers:
-
-<UL>
-<LI> Benedikt Oswald (PSI) </LI>
-<LI> Cristina Siegerist (NERSC/LBNL)</LI>
-<LI> John Shalf (NERSC/LBNL)</LI>
-</UL>
-
-For more information, please contact the
- <a href="mailto:h5part@lists.psi.ch">h5part</a> mailing list.
-
-\defgroup c_api                                 C API
-@{
-    \note The C API is implemented with '\c static \c inline' functions to minimize overhead.
-    \defgroup h5_c_api                  H5
-    @{
-        \defgroup h5_file		File interface
-
-	In this section we document the interface for accessing H5hut files.
-	
-        \defgroup h5_model          	Setting up the data model
-
-	The fundamental data model of H5hut is pretty simple. There
-	are (time-)steps to group data, that's it. In this section we
-	document the interface to these (time-)steps.
-	
-        \defgroup h5_file_attribs   	File attributes interface
-
-        File attributes are small datasets that can be used to
-        describe specific properties of a file. The H5hut API provides
-        functions to attach (write), read and inquire file attributes.
-
-        \defgroup h5_step_attribs   	Step attributes interface
-
-        Step attributes are similar to file attributes but are
-        attached to (time-)steps. They can be used to describe
-        specific properties of a specific step. The H5hut API provides
-        functions to attach (write), read and inquire step attributes.
-
-	\defgroup h5_attach		Attaching files
-
-	Sometimes it is required (or at least useful) to attach
-	additional information to H5hut files. H5hut provides
-	functions to attach other files to H5hut files. The attached
-	files can be of any type.
-	
-        \defgroup h5_log            	Controlling verbosity level
-
-	Controlling the verbosity level of H5hut. By default only
-	error messages are printed. For debugging it might be helpful
-	to increase the verbosity level.
-	
-        \defgroup h5_debug          	Controlling debug output
-
-	Debug output mainly intended for developers.
-
-        \defgroup h5_error          	Error handling interface
-
-	H5hut comes with two error handler. The default error handler
-	prints an error message (which can be suppressed by setting
-	the verbosity level to \c 0), sets an internal error number
-	and returns to the calling program with the value \c
-	H5_FAILURE. It is up to the programmer to handle the error
-	properly. In certain use-cases it make sense just to abort the
-	program, so no additional error handling is needed.  H5hut
-	provides an abort error-handler for this use-cases-
-	
-    @}
-    \defgroup h5part_c_api              H5Part
-    @{
-        \defgroup h5part_model          Setting up the data model
-
-	The H5Part data model interface provides functions to set and
-	inquire (per core) views on datasets.
-	
-        \defgroup h5part_io         	Dataset interface
-
-	The dataset interface provides functions to read and write
-	datasets. The following data types are supported:
-
-	- 64-bit floating point numbers (\c h5_float64_t)
-	- 32-bit floating point numbers (\c h5_float32_t)
-	- 64-bit integers (\c h5_int64_t)
-	- 32-bit integers (\c h5_int32_t)
-
-	\note Before you can write or read a dataset, you have to
-	define a "view" on the dataset for each core.
-
-    @}
-    \defgroup h5block_c_api             H5Block
-    @{
-        \defgroup h5block_model         Setting up the data model
-
-	The H5Block data model interface provides functions to set and
-	inquire (per core) views on fields. 
-
-	\defgroup h5block_io            Interface to block structured data
-
-	H5Block provides functions to store and retrieve
-
-	- 3-dimensional fields with scalar values
-	- 3-dimensional fields with 3-dimensional vectors as values
-
-	The following datatypes are supported:
-	
-	- 64-bit floating point numbers (\c h5_float64_t)
-	- 32-bit floating point numbers (\c h5_float32_t)
-	- 64-bit integers (\c h5_int64_t)
-	- 32-bit integers (\c h5_int32_t)
-
-	\defgroup h5block_attrib	Attaching attributes to field data
-
-        Field attributes are small datasets that can be used to
-        describe specific properties of a field like origin, spacing
-        or coordinates. The H5hut API provides functions to attach
-        (write), read and inquire file attributes.
-                    
-   @}
-@}
-*/
-
-/*!
-        \defgroup f90_api                               Fortran90 API
-        @{
-                \defgroup h5_f90_api                    H5
-                @{
-                        \defgroup h5_file_f             file interface
-                        \defgroup h5_model_f            setting up the data model
-                        \defgroup h5_file_attribs_f     reading and writing file attributes
-                        \defgroup h5_step_attribs_f     reading and writing step attributes	
-			\defgroup h5_log_f		control verbosity level
-			\defgroup h5_debug_f		control debug output
-		        \defgroup h5_error_f            error handling interface
-		@}
-                \defgroup h5part_f90_api                H5Part
-                @{
-                        \defgroup h5part_model_f        setting up the data model
-                        \defgroup h5part_io_f           reading and writing datasets
-                @}
-                \defgroup h5block_f90_api               H5Block
-                @{
-                        \defgroup h5block_model_f       setting up the data model
-                        \defgroup h5block_io_f          reading and writing datasets
-                        \defgroup h5block_attrib_f      reading and writing attributes
-                @}
-        @}
-*/
-
@@ -1,14 +1,2 @@
 EXTRA_DIST = \
-	Doxyfile \
-        H5.dox
-
-all:
-
-doc:
-
-doxydoc:
-	doxygen
-
-clean-local:
-	$(RM) -r ReferencePages TWiki
-	$(RM) *~
+	Doxyfile doxyfooter
@@ -1,2 +0,0 @@
-
-
@@ -1,4 +0,0 @@
-<style type="text/css">
-        h1 { text-align: center; }
-</style>
-
@@ -1,6 +0,0 @@
-<HTML>
-    <HEAD>
-      <TITLE>H5/H5Part/H5Block/H5Fed API</TITLE>
-      <LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
-    </HEAD>
-    <BODY BGCOLOR="#FFFFFF">
@@ -1,36 +0,0 @@
-#!/bin/bash
-
-shopt -s nullglob
-
-function html2twiki() {
-	declare	-rx	infile=$1
-	declare	-rx	outdir=$2
-	declare	-rx	fname=$( sed -n 's/.* member="\([a-zA-Z0-9_.]*\)::\([_a-zA-Z0-9]*\)" .*/\2/p' "${infile}" )
-	declare -rx	outfile="${outdir}/${fname}.txt"
-
-	grep -q " member=" "${infile}" || return 0
-
-	sed  '/Generated by/,/anchor/d' "${infile}" > "${outfile}"
-}
-
-mkdir -p TWiki/h5_core
-mkdir -p TWiki/H5
-mkdir -p TWiki/H5Part
-mkdir -p TWiki/H5Block
-mkdir -p TWiki/H5Fed
-
-for f in ReferencePages/group__h5__core_*.html; do
-	html2twiki $f  TWiki/h5_core
-done
-for f in ReferencePages/group__h5__c__api_*.html; do
-	html2twiki $f  TWiki/H5
-done
-for f in ReferencePages/group__h5part__c__api_*.html; do
-	html2twiki $f  TWiki/H5Part
-done
-for f in ReferencePages/group__h5block__c__api_*.html; do
-	html2twiki $f  TWiki/H5Block
-done
-for f in ReferencePages/group__h5fed__c__api_*.html; do
-	html2twiki $f  TWiki/H5Fed
-done
@@ -1,39 +0,0 @@
-#!/usr/bin/env python
-
-from lxml import etree
-from lxml.html import builder as E
-import os
-import re
-
-tree   = etree.parse('tagfile')
-tags = tree.xpath ('//member[@kind="function"]')
-tags_per_files = {}
-for tag in tags:
-     name = tag.find("name").text
-     anchor = tag.find("anchor").text
-     anchorfile = tag.find("anchorfile").text
-     if anchorfile in tags_per_files:
-         tags_per_files[anchorfile].append([name, anchor])
-     else:
-         tags_per_files[anchorfile] = [[name, anchor]]
-
-
-prefix = None
-for line in open("Doxyfile", "r"):
-     if re.search ("^OUTPUT_DIRECTORY", line):
-          prefix = line.split("=")[-1].strip()
-
-if not prefix:
-     prefix = "."
-
-parser = etree.HTMLParser()
-for filename,anchors in tags_per_files.items():
-     print "Processing file: %s/%s" % (prefix, filename)
-     tree = etree.parse ("%s/%s" % (prefix, filename), parser)
-     for name,id in anchors:
-          anchor = tree.xpath ('//a[@id="%s"]' % id)
-          el = E.A(id="%s" % name)
-          anchor[0].addnext (el)
-
-     f = open ("%s/%s" % (prefix, filename), "w")
-     f.write (etree.tostring (tree))
@@ -1,10 +0,0 @@
-TET no. 0:
-0.5, 0.5, 0.0
-0.0, 0.0, 1.0
-0.0, 0.0, 0.0
-0.0, 1.0, 0.0
-TET no. 1:
-0.5, 0.5, 0.0
-0.0, 0.0, 0.0
-0.0, 0.0, 1.0
-1.0, 0.0, 0.0
@@ -1,25 +0,0 @@
-# vtk DataFile Version 2.0
-VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
-ASCII
-DATASET UNSTRUCTURED_GRID
-
-POINTS 5 DOUBLE
-0.5 0.5 0.0
-0.0 0.0 1.0
-0.0 0.0 0.0
-0.0 1.0 0.0
-1.0 0.0 0.0
-
-CELLS 2 10
-4	0  1  2  3 
-4	0  2  1  4 
-
-CELL_TYPES 2
-10
-10
-
-CELL_DATA 2
-SCALARS cell_attribute_data float 1
-LOOKUP_TABLE default
-0
-1
@@ -1,10 +0,0 @@
-TET no. 0:
-0.0, 0.5, 0.5
-0.0, 0.0, 0.0
-1.0, 0.0, 0.0
-0.0, 1.0, 0.0
-TET no. 1:
-0.0, 0.5, 0.5
-1.0, 0.0, 0.0
-0.0, 0.0, 0.0
-0.0, 0.0, 1.0
@@ -1,25 +0,0 @@
-# vtk DataFile Version 2.0
-VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
-ASCII
-DATASET UNSTRUCTURED_GRID
-
-POINTS 5 DOUBLE
-0.0 0.5 0.5
-0.0 0.0 0.0
-1.0 0.0 0.0
-0.0 1.0 0.0
-0.0 0.0 1.0
-
-CELLS 2 10
-4	0  1  2  3 
-4	0  2  1  4 
-
-CELL_TYPES 2
-10
-10
-
-CELL_DATA 2
-SCALARS cell_attribute_data float 1
-LOOKUP_TABLE default
-0
-1
@@ -1,10 +0,0 @@
-TET no. 0:
-0.5, 0.0, 0.5
-0.0, 0.0, 0.0
-0.0, 1.0, 0.0
-0.0, 0.0, 1.0
-TET no. 1:
-0.5, 0.0, 0.5
-0.0, 1.0, 0.0
-0.0, 0.0, 0.0
-1.0, 0.0, 0.0
@@ -1,25 +0,0 @@
-# vtk DataFile Version 2.0
-VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
-ASCII
-DATASET UNSTRUCTURED_GRID
-
-POINTS 5 DOUBLE
-0.5 0.0 0.5
-0.0 0.0 0.0
-0.0 1.0 0.0
-0.0 0.0 1.0
-1.0 0.0 0.0
-
-CELLS 2 10
-4	0  1  2  3 
-4	0  2  1  4 
-
-CELL_TYPES 2
-10
-10
-
-CELL_DATA 2
-SCALARS cell_attribute_data float 1
-LOOKUP_TABLE default
-0
-1
@@ -1,10 +0,0 @@
-TET no. 0:
-0.0, 0.0, 0.5
-1.0, 0.0, 0.0
-0.0, 1.0, 0.0
-0.0, 0.0, 0.0
-TET no. 1:
-0.0, 0.0, 0.5
-0.0, 1.0, 0.0
-1.0, 0.0, 0.0
-0.0, 0.0, 1.0
@@ -1,25 +0,0 @@
-# vtk DataFile Version 2.0
-VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
-ASCII
-DATASET UNSTRUCTURED_GRID
-
-POINTS 5 DOUBLE
-0.0 0.0 0.5
-1.0 0.0 0.0
-0.0 1.0 0.0
-0.0 0.0 0.0
-0.0 0.0 1.0
-
-CELLS 2 10
-4	0  1  2  3 
-4	0  2  1  4 
-
-CELL_TYPES 2
-10
-10
-
-CELL_DATA 2
-SCALARS cell_attribute_data float 1
-LOOKUP_TABLE default
-0
-1
@@ -1,10 +0,0 @@
-TET no. 0:
-0.5, 0.0, 0.0
-0.0, 1.0, 0.0
-0.0, 0.0, 1.0
-0.0, 0.0, 0.0
-TET no. 1:
-0.5, 0.0, 0.0
-0.0, 0.0, 1.0
-0.0, 1.0, 0.0
-1.0, 0.0, 0.0
@@ -1,25 +0,0 @@
-# vtk DataFile Version 2.0
-VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
-ASCII
-DATASET UNSTRUCTURED_GRID
-
-POINTS 5 DOUBLE
-0.5 0.0 0.0
-0.0 1.0 0.0
-0.0 0.0 1.0
-0.0 0.0 0.0
-1.0 0.0 0.0
-
-CELLS 2 10
-4	0  1  2  3 
-4	0  2  1  4 
-
-CELL_TYPES 2
-10
-10
-
-CELL_DATA 2
-SCALARS cell_attribute_data float 1
-LOOKUP_TABLE default
-0
-1
@@ -1,10 +0,0 @@
-TET no. 0:
-0.0, 0.5, 0.0
-0.0, 0.0, 1.0
-1.0, 0.0, 0.0
-0.0, 0.0, 0.0
-TET no. 1:
-0.0, 0.5, 0.0
-1.0, 0.0, 0.0
-0.0, 0.0, 1.0
-0.0, 1.0, 0.0
@@ -1,25 +0,0 @@
-# vtk DataFile Version 2.0
-VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
-ASCII
-DATASET UNSTRUCTURED_GRID
-
-POINTS 5 DOUBLE
-0.0 0.5 0.0
-0.0 0.0 1.0
-1.0 0.0 0.0
-0.0 0.0 0.0
-0.0 1.0 0.0
-
-CELLS 2 10
-4	0  1  2  3 
-4	0  2  1  4 
-
-CELL_TYPES 2
-10
-10
-
-CELL_DATA 2
-SCALARS cell_attribute_data float 1
-LOOKUP_TABLE default
-0
-1
@@ -1,15 +0,0 @@
-TET no. 0:
-0.5, 0.5, 0.0
-0.0, 1.0, 0.0
-0.0, 0.5, 0.5
-0.0, 0.0, 0.0
-TET no. 1:
-0.0, 0.5, 0.5
-1.0, 0.0, 0.0
-0.5, 0.5, 0.0
-0.0, 0.0, 0.0
-TET no. 2:
-1.0, 0.0, 0.0
-0.0, 0.5, 0.5
-0.0, 0.0, 1.0
-0.0, 0.0, 0.0
@@ -1,29 +0,0 @@
-# vtk DataFile Version 2.0
-VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
-ASCII
-DATASET UNSTRUCTURED_GRID
-
-POINTS 6 DOUBLE
-0.5 0.5 0.0
-0.0 1.0 0.0
-0.0 0.5 0.5
-0.0 0.0 0.0
-1.0 0.0 0.0
-0.0 0.0 1.0
-
-CELLS 3 15
-4	0  1  2  3 
-4	2  4  0  3 
-4	4  2  5  3 
-
-CELL_TYPES 3
-10
-10
-10
-
-CELL_DATA 3
-SCALARS cell_attribute_data float 1
-LOOKUP_TABLE default
-0
-1
-2
@@ -1,15 +0,0 @@
-TET no. 0:
-0.5, 0.0, 0.5
-1.0, 0.0, 0.0
-0.5, 0.5, 0.0
-0.0, 0.0, 0.0
-TET no. 1:
-0.5, 0.5, 0.0
-0.0, 0.0, 1.0
-0.5, 0.0, 0.5
-0.0, 0.0, 0.0
-TET no. 2:
-0.0, 0.0, 1.0
-0.5, 0.5, 0.0
-0.0, 1.0, 0.0
-0.0, 0.0, 0.0
@@ -1,29 +0,0 @@
-# vtk DataFile Version 2.0
-VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
-ASCII
-DATASET UNSTRUCTURED_GRID
-
-POINTS 6 DOUBLE
-0.5 0.0 0.5
-1.0 0.0 0.0
-0.5 0.5 0.0
-0.0 0.0 0.0
-0.0 0.0 1.0
-0.0 1.0 0.0
-
-CELLS 3 15
-4	0  1  2  3 
-4	2  4  0  3 
-4	4  2  5  3 
-
-CELL_TYPES 3
-10
-10
-10
-
-CELL_DATA 3
-SCALARS cell_attribute_data float 1
-LOOKUP_TABLE default
-0
-1
-2
@@ -1,20 +0,0 @@
-TET no. 0:
-1.0, 0.0, 0.0
-0.5, 0.5, 0.0
-0.0, 0.0, 0.5
-0.0, 0.0, 0.0
-TET no. 1:
-0.5, 0.5, 0.0
-0.0, 1.0, 0.0
-0.0, 0.0, 0.5
-0.0, 0.0, 0.0
-TET no. 2:
-0.5, 0.5, 0.0
-0.0, 0.0, 0.5
-0.0, 1.0, 0.0
-0.0, 0.0, 1.0
-TET no. 3:
-1.0, 0.0, 0.0
-0.0, 0.0, 0.5
-0.5, 0.5, 0.0
-0.0, 0.0, 1.0
@@ -1,32 +0,0 @@
-# vtk DataFile Version 2.0
-VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
-ASCII
-DATASET UNSTRUCTURED_GRID
-
-POINTS 6 DOUBLE
-1.0 0.0 0.0
-0.5 0.5 0.0
-0.0 0.0 0.5
-0.0 0.0 0.0
-0.0 1.0 0.0
-0.0 0.0 1.0
-
-CELLS 4 20
-4	0  1  2  3 
-4	1  4  2  3 
-4	1  2  4  5 
-4	0  2  1  5 
-
-CELL_TYPES 4
-10
-10
-10
-10
-
-CELL_DATA 4
-SCALARS cell_attribute_data float 1
-LOOKUP_TABLE default
-0
-1
-2
-3
@@ -1,15 +0,0 @@
-TET no. 0:
-0.5, 0.5, 0.0
-1.0, 0.0, 0.0
-0.5, 0.0, 0.0
-0.0, 0.0, 1.0
-TET no. 1:
-0.5, 0.0, 0.0
-0.0, 1.0, 0.0
-0.5, 0.5, 0.0
-0.0, 0.0, 1.0
-TET no. 2:
-0.0, 1.0, 0.0
-0.5, 0.0, 0.0
-0.0, 0.0, 0.0
-0.0, 0.0, 1.0
@@ -1,29 +0,0 @@
-# vtk DataFile Version 2.0
-VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
-ASCII
-DATASET UNSTRUCTURED_GRID
-
-POINTS 6 DOUBLE
-0.5 0.5 0.0
-1.0 0.0 0.0
-0.5 0.0 0.0
-0.0 0.0 1.0
-0.0 1.0 0.0
-0.0 0.0 0.0
-
-CELLS 3 15
-4	0  1  2  3 
-4	2  4  0  3 
-4	4  2  5  3 
-
-CELL_TYPES 3
-10
-10
-10
-
-CELL_DATA 3
-SCALARS cell_attribute_data float 1
-LOOKUP_TABLE default
-0
-1
-2
@@ -1,15 +0,0 @@
-TET no. 0:
-0.0, 0.5, 0.0
-0.0, 1.0, 0.0
-0.5, 0.5, 0.0
-0.0, 0.0, 1.0
-TET no. 1:
-0.5, 0.5, 0.0
-0.0, 0.0, 0.0
-0.0, 0.5, 0.0
-0.0, 0.0, 1.0
-TET no. 2:
-0.0, 0.0, 0.0
-0.5, 0.5, 0.0
-1.0, 0.0, 0.0
-0.0, 0.0, 1.0
@@ -1,29 +0,0 @@
-# vtk DataFile Version 2.0
-VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
-ASCII
-DATASET UNSTRUCTURED_GRID
-
-POINTS 6 DOUBLE
-0.0 0.5 0.0
-0.0 1.0 0.0
-0.5 0.5 0.0
-0.0 0.0 1.0
-0.0 0.0 0.0
-1.0 0.0 0.0
-
-CELLS 3 15
-4	0  1  2  3 
-4	2  4  0  3 
-4	4  2  5  3 
-
-CELL_TYPES 3
-10
-10
-10
-
-CELL_DATA 3
-SCALARS cell_attribute_data float 1
-LOOKUP_TABLE default
-0
-1
-2
--- a/Show More
+++ b/Show More