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base: H5hut/src:H5Part-1.6.4
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H5hut/src:master H5hut/src:int8 H5hut/src:1.99.x H5hut/src:1.99 H5hut/src:1.6 H5hut/src:1.4 H5hut/src:1.2 H5hut/src:1.0
H5hut/src:H5hut-2.0.0rc7 H5hut/src:H5hut-2.0.0rc6 H5hut/src:H5hut-2.0.0rc5 H5hut/src:H5hut-2.0.0rc4 H5hut/src:H5hut-2.0.0rc1 H5hut/src:H5hut-2.0.0rc3 H5hut/src:H5hut-2.0.0rc2 H5hut/src:1.99.13 H5hut/src:1.99.12 H5hut/src:1.99.11 H5hut/src:1.99.10 H5hut/src:1.99.9 H5hut/src:1.99.8 H5hut/src:1.99.7 H5hut/src:H5Part-1.6.5 H5hut/src:1.99.6 H5hut/src:H5Part-1.6.4 H5hut/src:1.99.5 H5hut/src:H5Part-1.6.3 H5hut/src:1.99.4 H5hut/src:1.99.3 H5hut/src:1.99.2 H5hut/src:H5hut-1.99.1 H5hut/src:1.99.0 H5hut/src:H5Part-1.6.2 H5hut/src:H5Part-1.6.1 H5hut/src:H5Part-1.6.0 H5hut/src:H5Part-1.4 H5hut/src:H5Part-1.3.3 H5hut/src:H5Part-1.3.2 H5hut/src:H5Part-1.3.1
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compare: H5hut/src:H5hut-2.0.0rc2
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H5hut/src:master H5hut/src:int8 H5hut/src:1.99.x H5hut/src:1.99 H5hut/src:1.6 H5hut/src:1.4 H5hut/src:1.2 H5hut/src:1.0
H5hut/src:H5hut-2.0.0rc7 H5hut/src:H5hut-2.0.0rc6 H5hut/src:H5hut-2.0.0rc5 H5hut/src:H5hut-2.0.0rc4 H5hut/src:H5hut-2.0.0rc1 H5hut/src:H5hut-2.0.0rc3 H5hut/src:H5hut-2.0.0rc2 H5hut/src:1.99.13 H5hut/src:1.99.12 H5hut/src:1.99.11 H5hut/src:1.99.10 H5hut/src:1.99.9 H5hut/src:1.99.8 H5hut/src:1.99.7 H5hut/src:H5Part-1.6.5 H5hut/src:1.99.6 H5hut/src:H5Part-1.6.4 H5hut/src:1.99.5 H5hut/src:H5Part-1.6.3 H5hut/src:1.99.4 H5hut/src:1.99.3 H5hut/src:1.99.2 H5hut/src:H5hut-1.99.1 H5hut/src:1.99.0 H5hut/src:H5Part-1.6.2 H5hut/src:H5Part-1.6.1 H5hut/src:H5Part-1.6.0 H5hut/src:H5Part-1.4 H5hut/src:H5Part-1.3.3 H5hut/src:H5Part-1.3.2 H5hut/src:H5Part-1.3.1

278 Commits
H5Part-1.6.4 .. H5hut-2.0.0rc2

Author SHA1 Message Date
gsell ad52833022 configure.ac 
- set version to 2.0.0rc2
 2016-09-23 13:05:59 +02:00
gsell 3425a30068 src/include/h5core/Makefile.am 
- we have to use 'otherinclude_HEADER' instead of 'include_HEADERS'
 2016-09-23 13:05:37 +02:00
gsell 9f3a677ea6 src/h5core/Makefile.am 
- private/h5_const.h added to EXTRA_HEADERS
 2016-09-23 13:04:16 +02:00
gsell 23807ff972 examples/H5/write_file_attribs.py 
- added
 2016-07-28 17:34:56 +02:00
gsell 93d4f60116 src/Python 
- wrappers for reading/writing attributes
 2016-07-28 17:34:22 +02:00
gsell 20cd5aae98 src/h5core/h5t_io.c 
- adapted to changed 'h5priv_write_attrib()'
 2016-07-28 17:32:13 +02:00
gsell cae3b00855 implement proper handling of append-only file mode for attributes 2016-07-28 17:31:06 +02:00
gsell 2a462733ca src/h5core/private/h5_file.h 
- is_writable() is now static inline not a macro
- macro CHECK_READABLE_MODE() added
 2016-07-28 17:29:13 +02:00
gsell 6fb8b77baa src/h5core/h5_attachements.c 
- h5_add_attachment(): check file mode, return error if read-only
- adapted to new function 'h5priv_create_group()'
 2016-07-28 17:27:05 +02:00
gsell c26d6a84e3 adapted to new/changed function: 
h5priv_open_group(): open existing group
h5priv_create_group(): create or open existing group
h5priv_open_group_with_intermediates(): open existing group
h5priv_create_group_with_intermediates(): create or open existing group
 2016-07-28 17:24:34 +02:00
gsell 54ccc3b576 src/inlcude/H5_step_attribs() 
- H5GetStepAttribName() added
- use const types where applicable
 2016-07-28 17:17:18 +02:00
gsell 8ffe944519 test/Makefile.am 
- link static if debug is enabled
 2016-07-28 17:15:39 +02:00
gsell 2bb3d688ae test/h5{b,u}_{read,write}.c 
- fixes for serial version
- h5u_test_write4(): bugfix: we have to write new attributes since we are in append-only mode
 2016-07-28 16:05:36 +02:00
gsell 647af5847e src/include/H5_file_attrib.h 
- H5ReadFileAttribString(): bugdix in format of H5_API_ENTER(), print pointer value not string
 2016-07-28 16:01:11 +02:00
gsell aa4f40ee3d src/h5core/private/h5_model.h 
- h5priv_normalize_type(): bugfix: wrong type in H5_PRIV_API_ENTER() set
 2016-07-28 15:59:35 +02:00
gsell f1daa56cb8 src/h5core/private/h5_model.c 
- h5u_set_num_points(): set step to '0' if not already set
- h5u_set_chunk(): CHECK_TIMEGROUP(f) removed. The step must not be set before setting a chunk size
 2016-07-28 15:57:34 +02:00
gsell 2ea8245bba src/h5core/h5b_io.c 
- write_data():
  - bugfix: convert passed type is from H5hut to HDF5 type
  - parameter 'field_name' removed
- read_data():
  - bugfix: convert passed type is from H5hut to HDF5 type
  - compare type passed as parameter and type of dataset
- remove prefixing underscore from static functions
- adaptions to coding style
 2016-07-28 15:54:52 +02:00
gsell 04fe7fdd9e configure.ac: 
- do not ignore CC an CXX
 2016-07-28 12:18:25 +02:00
gsell 075b2f39da src/Python/H5hut.i 
- towards a more usable wrapper
 2016-07-15 17:46:02 +02:00
gsell 7b05c32ad9 src/h5core/private/h5_attrib.h 
- get_attrib_info(): wrong length was return for string attributes
 2016-07-15 17:43:59 +02:00
gsell 825ee8ac5f examples/H5/Makefile.am 
- build static executables if debug is enabled
 2016-07-15 17:40:37 +02:00
gsell 9d70c07476 src/Python/H5hut.i 
- some issues with inquiring file-attributes and datasets fixed
 2016-07-08 17:13:18 +02:00
gsell 03986b00ac src/include/g5core/h5_{file.types}.h 
- enum used for file modes instead of macros
 2016-07-08 17:11:28 +02:00
gsell ad83c3841b C-API: 
- declare more args as const
- H5GetFileAttribName() added
 2016-07-08 17:09:16 +02:00
gsell 73fabd043b src/h5core/h5b_modules.c 
- check file-handle and opened step
- h5b_3d_has_view(): debug output added
 2016-07-08 17:07:18 +02:00
gsell 0aa44727c6 src/h5core/h5_file.c 
- check file-handle and opened step
- h5_open_file2(): bugfix: move setting of step name format to the end of the function
- h5_flush_step(): bugfix: flush step data only, if a step is open
 2016-07-08 17:06:07 +02:00
gsell babd19ddd4 core API: 
- add checks for file-handle and opened step
 2016-07-08 17:03:18 +02:00
gsell c80f6f5679 use new macro H5_RETURN_ERROR where possible 2016-07-01 17:59:12 +02:00
gsell 7b1079ae5f example/H5Fed/Makefile.am 
- compile static if ENABLE_DEBUG is set. This makes life simpler if we build shared libs
 2016-07-01 16:29:10 +02:00
gsell ecd2723419 examples/H5Fed/tetmesh_{adjacencies,read_tags}.c 
- cleanup
 2016-07-01 16:18:17 +02:00
gsell c9044d8e1b src/h5core/private/h5_init.{c,h} 
- initialize MPI if not yet done
 2016-07-01 16:10:37 +02:00
gsell 5b57bedade examples/H5Fed/dump_field_attributes.c: 
- bugfix in printing string attributes
 2016-07-01 16:07:02 +02:00
gsell 222789a1cf examples/H5Block: 
- inline function changed to static inline (otherwise gcc >= 5.3 complains)
 2016-07-01 15:36:30 +02:00
gsell 21dd57c9c6 Fortran-API: 
- use enumeration for data-types
 2016-07-01 15:34:31 +02:00
gsell fc29f7b6f0 src/h5core/private/h5_hdf5.h 
- cleanup and minor changes
- more wrapper functions added
 2016-07-01 15:33:53 +02:00
gsell e56872ce92 src/include/H5_err.h: 
- remove debug output from H5AbortOnError()
 2016-07-01 15:32:54 +02:00
gsell 85ecf4c387 core API/C-API: use enumeration for data-types 2016-07-01 15:31:55 +02:00
gsell 6979a358ae .gitignore: 
- exclude all files matching *.h5
 2016-06-24 16:40:43 +02:00
gsell 9fc3b233bc examples/H5Part: 
- include of stdlib.h added
 2016-06-24 16:37:59 +02:00
gsell f5eb26d2ec examples/H5Part/query.c: 
- added examples to query dataset in steps
 2016-06-24 16:36:54 +02:00
gsell 6af129b338 examples/H5Block/read_write_scalar_field.c: 
- include stdlib.h added
 2016-06-24 16:35:43 +02:00
gsell 215d1a7d79 examples/H5/read_step_attribs: 
- include required stdlib.h
 2016-06-24 15:55:20 +02:00
gsell 8bb22e4400 exampkes/H5/read_file_attribs.c 
- use macros to define verbosity and debug mask
 2016-06-24 15:54:40 +02:00
gsell caad81996a examples/H5/attache_file.c: 
- use macros for verbosity level and debug mask
- open file rw in second part
 2016-06-24 15:53:36 +02:00
gsell f97e3c8f2d core API: 
- debugging macros simplified
- cleanup
- h5_delete_attachment(): check of file mode added
 2016-06-24 15:51:39 +02:00
gsell fba78db1c0 test/h5u_read.c: 
- h5u_test_read3(): bugfix
 2016-06-24 15:45:26 +02:00
gsell 291328b997 src/h5core/private/h5_init.h 
- cosmetic change
 2016-06-22 16:15:03 +02:00
gsell 2c1bca01aa src/include/H5Block_model.h 
- break down some longer lines
 2016-06-22 16:14:18 +02:00
gsell a633b362a6 src/include/H5Part_model.h: 
- break down some long lines
- H5PartGetDatasetName(): pass pointer to dataset name as const pointer
 2016-06-22 16:13:16 +02:00
gsell a12908ed90 src/include/h5core/h5_err.h: 
- declaration of h5_error() moved to this file
 2016-06-22 16:10:20 +02:00
gsell b83d9cc8a7 src/include/h5core/h5_log.h 
- hh5_{warn,info,debug} are not static inline any more
 2016-06-22 16:08:46 +02:00
gsell 6ad9ae50e0 src/include/h5core/h5_types.h 
- H5T_COMPOUND removed from enum h5_types_t
src/h5core/private/h5_init.c
- use H5T_COMPOUND in creation of compound types
 2016-06-22 16:05:21 +02:00
gsell 9ac7e09423 src/include/h5core/h5_file_attribs.h 
src/include/h5core/h5_step_attribs.h
src/include/h5core/h5b_attribs.h:
- use new H5hut enum type for attribute data-types
 2016-06-22 16:01:46 +02:00
gsell 66452a274b src/include/h5core/h5b_io.h 
src/include/h5core/h5u_io.h:
- pass data-type as H5hut enum
 2016-06-22 15:40:32 +02:00
gsell d947f51c2d src/h5core/...: 
- introduce/implement new H5hut types
 2016-06-22 15:38:24 +02:00
gsell f5729f6f07 src/h5core/h5_model.c 
src/h5core/h5b_attribs.c:
- cleanup/review header file we have to include
 2016-06-22 15:24:05 +02:00
gsell a64f2ce03a src/h5core/h5_err.c 
src/h5core/h5_log.c:
- define args as const where possible
- h5_verror() is now in h5_err.c
- h5priv_vprintf() is now in h5_log.c
 2016-06-22 15:19:23 +02:00
gsell b880bd397f C-API: 
- use new H5hut type enumeration, not HDF5 types
 2016-06-22 14:52:02 +02:00
gsell cd2c9031b9 src/h5core/h5_attribs.c: 
- define args as const where possible
 2016-06-22 14:48:19 +02:00
gsell fb5e55990f src/h5core/h5file 
src/h5core/h5b_io.h:
- define args as const where possible
 2016-06-22 14:38:09 +02:00
gsell 25dff9257c src/h5core/Makefile.am 
- h5_init.h is now in 'private'
 2016-06-22 14:34:44 +02:00
gsell ac37d5fc2f Fortran API: 
- use new enumeration of types for I/O. HDF5 types are not used any more in the high level API
 2016-06-22 14:33:48 +02:00
gsell 983496104b src/h5core/h5_log.c 
src/h5core/h5_init.h
src/h5core/h5_log.h:
- cleanup, minor changes
 2016-06-22 14:24:54 +02:00
gsell aaeca8b6b7 examples/H5/read_file_attribs.c: 
- call MPI_Init() before any H5hut functions
 2016-06-22 13:47:53 +02:00
gsell 0182d60835 src/h5core/h5_init.c: 
- moved to src/h5core/private
 2016-06-22 13:46:40 +02:00
gsell f75ef09cf9 consolidation of log/debug message interface 2016-06-17 13:50:07 +02:00
gsell c831a90a2e src/h5core/h5_errorhandling.c: 
- renamed to h5_err.c
 2016-06-17 13:49:35 +02:00
gsell bdcc8f2089 this commits includes several changes which should have been done in 
multiple steps:
- the functions for inquiring datasets and attributes do not return
  an HDF5 type any more but an enum of type h5_types_t. This change
  was required for the Python module.
- bugfix in reading attributes: See https://git.psi.ch/H5hut/src/issues/4
- several consts and macros have been moved from the public C-API to
  the core API
- more consitent file naming
- several 'private' function have been moved to their 'private' header
  files as 'static inline'.
- minor formatting changes
 2016-06-17 10:44:25 +02:00
gsell bbbaa6a21b src/h5core/h5t_octree.c: 
- definition of 'h5_oct_dta_types' moved from header file to this file
 2016-06-03 17:25:48 +02:00
gsell 4c5b16169d src/Fortran/Makefile.am: 
- bugfix: H5Block_attribs.f90 were listed twice
 2016-06-03 17:24:36 +02:00
gsell cc46b433e1 .gitignore: some files added 2016-06-03 17:23:43 +02:00
gsell a8e209a7d3 src/Python: 
- file and step attributes added
- all attribute i/o function have exactly 3 arguments now
- string attributes are handled the same way as attributes of other type
 2016-06-03 17:23:15 +02:00
gsell 80cf35e807 src/Python: ignore file added 2016-06-03 17:18:00 +02:00
gsell d53c5b3171 tools/vtk2h5grid/Makefile.am: use AM_LDFLAGS not LDFLAGS 2016-05-20 18:12:00 +02:00
gsell 8edb48aff8 src/Python/Makefile.am: use same name for serial and parallel version 2016-05-20 18:10:30 +02:00
gsell 24af2ae2a3 src/Makefile.am: Python sub-dir added 2016-05-20 18:09:28 +02:00
gsell 7fbd5c5de1 configure.ac: set version to 2.0.0rc1; correct indentation 2016-05-20 18:08:44 +02:00
gsell 18611991a5 Python support added 2016-05-12 13:19:51 +02:00
gsell 603366bcd6 src/h5t_io.c 
- format errors fixed
- bugfixes
 2016-04-29 18:10:25 +02:00
gsell 17317bb261 ignore file changed 2016-04-29 16:34:33 +02:00
gsell 52d44e3b3c - re-organize file hierarchy 
- years in copyright changed
 2016-04-29 16:34:07 +02:00
gsell 3d6230629c some missing query function implemented, see issue#1 in Gitlab 2016-04-22 18:06:58 +02:00
gsell 44ffea4fd5 examples/H5Block/write_field.c: H5hut file renamed to example_field.h5 2016-04-15 19:02:15 +02:00
gsell 97516866c7 examples/H5Block: attach_field_attribs and dump_field_attribs added 2016-04-15 19:01:00 +02:00
gsell 1dfcd9f876 fixes for hdf5 1.10.x 2016-04-15 18:58:10 +02:00
gsell 2dd2c625b7 .gitignore: has_field added 2016-04-08 19:07:52 +02:00
gsell 3137063d22 example/H5Block: 
- has_field.c added
 2016-04-08 19:06:42 +02:00
gsell 9a16fa090a example/H5Block/write_field.c: 
- slice in Z direction
 2016-04-08 19:06:15 +02:00
gsell df0750df4c examples/H5Block/read_write_scalar_field.c: 
- cleanup
 2016-04-07 11:11:00 +02:00
gsell b69aa9b92d example/H5Block 
- write_field added
 2016-04-07 11:10:22 +02:00
gsell 99699d4bf7 documentation updated 2016-04-01 19:12:34 +02:00
gsell 9df1a57778 src/h5core/h5b_model.c: 
- h5b_has_field() added
 2016-04-01 19:12:15 +02:00
gsell 1ed4f3985b src/include/H5Block_attribs.h: documentation updated 2016-03-30 18:05:15 +02:00
gsell 2c850612ab functions added to query existence of file-, step-. field-attributes amd to get information by name 2016-03-29 17:49:32 +02:00
gsell bc528f27e6 more cleanup on header files 2016-03-29 15:30:30 +02:00
gsell 5444b0e0ef .gitignore: vtk2h5grid added 2016-03-29 14:57:09 +02:00
gsell ae9e4cee01 C header files: 
- cleanup
 2016-03-29 14:55:35 +02:00
gsell 7490eed535 tools/vtk2h5grid/Makefile.am: 
- libH5hut library path changed
 2016-03-29 14:49:09 +02:00
gsell 84fa4a0b0a Merge branch 'master' of git.psi.ch:H5hut/src 2016-03-29 10:47:23 +02:00
gsell 718ef785f8 doc/H5.dox: re-structured 2016-03-29 10:46:35 +02:00
gsell 7002b73e82 src/{Fortran,h5core}/Makefile.am: 
- do not install the libs in src/lib
 2016-03-23 22:01:55 +01:00
gsell 2a8a43af39 src/include/H5_debug.f90: 
- h5_set_debug_mask(): bugfix
 2016-03-23 21:51:00 +01:00
gsell f0c2f29091 src/include/H5hut.f90: 
- bugfix in included files
 2016-03-23 21:50:10 +01:00
gsell 5362498a95 src/include/H5_const.f90: 
- bugfix in definition of H5_FAILED
 2016-03-23 21:49:34 +01:00
gsell 851905361d src/Fortran/H5.c: 
- h5_setprop_file_corevfd(): bugfix
 2016-03-23 21:47:40 +01:00
gsell 3c8b11f9eb src/{C,Fortran}/Makefile.am: 
- include_HEADERS fixed
 2016-03-23 21:46:37 +01:00
gsell 4dde2b61d2 COPYING: 
- year in copyright changed to 2016
 2016-03-23 21:45:25 +01:00
gsell d980f4d2b9 header files and documentation reorganized and reviewed 2016-03-18 17:58:30 +01:00
gsell 3f7c84dbf5 header files and documentation reorganized 2016-03-18 16:37:13 +01:00
gsell c5a05a1261 year in copyright changed 2016-03-18 14:25:30 +01:00
gsell 230f9a7b90 year in copyright changed 2016-03-18 14:23:49 +01:00
gsell 2cd718b7a1 src/include/h5core/h5.h: 
- h5_open_file1() return type is 'h5_file_p' not 'h5_file_t'
 2016-03-18 11:29:36 +01:00
gsell c73d10ffb7 src/include/H5Fed_model.h: 
- syntax errors fixed
 2016-03-18 11:28:40 +01:00
gsell 6209bc6cf9 src/include/H5.h: 
- bugfixes in H5OpenFile1() and H5GetVerbosityLevel1()
 2016-03-18 11:27:29 +01:00
gsell a013d43075 src/h5core/h5_openclose.c: 
- h5_open_file1(): fix return type
 2016-03-18 11:26:21 +01:00
gsell f151a24796 examples/H5Part/{read,write}_core_vfd.c: 
- missing 'incr' argument added to H5SetPropFileCoreVFD() call
 2016-03-18 11:25:25 +01:00
gsell 9d37783868 examples/H5Block/fields.c: 
- include H5hut.h
- write dims in right order
 2016-03-18 11:24:08 +01:00
gsell a8444e041b examples/H5/read_file_attribs(): 
- type cast fixed
 2016-03-18 11:22:38 +01:00
gsell dc9723dfe2 examples/H5/openclose.c 
- H5SetPropFileMPIO() renamed to H5SetFileMPIOCollective()
 2016-03-18 11:21:53 +01:00
gsell 91e7ed8c5b test/*: 
- H5SetPropFileMPIO() renamed to H5SetPropFileMPIOCollective()
 2016-03-18 11:04:11 +01:00
gsell b284ad9776 src/h5core/h5_attach.c: 
- in h5_get_attachment(): redundant check of file mode removed
 2016-03-17 17:55:41 +01:00
gsell f965ed4f18 src/h5core/*: 
- all *_has_* functions: return TRUE, FALSE or H5_FAILURE
 2016-03-17 17:53:32 +01:00
gsell 91316f314d src/include/*: 
- update/review documentation
- re-introduce old API functions
 2016-03-17 17:50:42 +01:00
gsell 538c9cdd76 src/h5core/h5u_model.c: 
- h5u_has_view() now returns H5_SUCCESS or H5_NOK
 2016-03-11 17:54:54 +01:00
gsell 28fc118118 src/h5core/h5b_model.c: 
- h5b_3d_has_view() now returns H5_SUCCESS or H5_NOK
 2016-03-11 17:53:30 +01:00
gsell 59fd8ea6c6 increment can now be specified for the core vfd driver 2016-03-11 17:51:17 +01:00
gsell 1273baf99e src/include/*: 
- doxgen documentation reviewed
 2016-03-11 17:49:09 +01:00
gsell befaccddaf doc/H5.dox: 
- document structure reviewed
 2016-03-11 17:48:37 +01:00
gsell 5204cb532b sdoc/Doxyfile 
- reviewed
 2016-03-11 17:47:59 +01:00
gsell 9917f12d96 .gitignore: 
- ignore doxygen output
 2016-03-11 17:46:54 +01:00
gsell 4b1d719d6c src/include/H5.h,H5Block_attribs.h: 
- add/review documentation
 2016-02-12 17:39:46 +01:00
gsell 43bc72b7d0 src/h5core/h5_openclose.c: 
- typo fixed
 2016-02-12 17:31:47 +01:00
gsell 64b4a3be09 doc/H5.dox: 
- update author list
- minor changes in overall structure
 2016-02-12 17:31:19 +01:00
gsell f4e7defffa doc/DoxygenLayout.xml: 
- deleted
 2016-02-12 17:30:38 +01:00
gsell 320fd77398 doc/Doxyfile: 
- changes required by new Doxygen version
- parse only files in src/include
- enable static function
 2016-02-12 17:29:32 +01:00
gsell 5714c390ec examples/*: 
- type cast malloc() result
 2016-02-09 10:10:57 +01:00
gsell a07d4101a2 examples/H5Block/read_write_scalar_field.c: 
- type cast malloc(2) return value to make C++ happy
 2016-02-09 09:55:17 +01:00
gsell 56787866fb test wheter I can commit again 2016-01-18 13:22:28 +01:00
gsell fb3b876f78 ignore zipped tar-balls 2016-01-18 13:18:55 +01:00
gsell e4ebb0f453 Makefiles.am's: 
- missing head-files added
 2015-10-16 18:39:35 +02:00
gsell 51f2210ff1 test/h5b_test.c: 
- run  tests 'write2' and 'read2' only in parallel case
 2015-10-16 18:16:27 +02:00
gsell 511fbb89de src/h5core/h5b_model.c: 
- h5b_3d_set_view(): bugfix in serial code
 2015-10-16 18:14:27 +02:00
gsell 87fcc4930b h5core: 
- H5_VER_STRING defined from PACKAGE_VERSION as const char*
 2015-10-16 18:13:18 +02:00
gsell 49460b62c3 examples: 
- compile Fortran examples only if parallel is enabled
 2015-10-16 18:11:56 +02:00
gsell 8ae12f7ee9 configure.ac 
- copyright notice added
- set version to 1.99.15rc1
 2015-10-16 18:10:46 +02:00
gsell ca7dd3b99c examples/H5Part/read_strided{.c,f.f90} 
- compute and set a canonical view
 2015-10-16 16:02:17 +02:00
gsell 6efdfce033 examples/H5Part/read_setnparticles{.c,f.f90} 
- changes in comment lines
 2015-10-16 16:01:32 +02:00
gsell 55cc6bb7d0 src/h5core/h5u_model.c 
- h5u_set_num_points(): print start index of view if debug enabled
 2015-10-16 15:59:24 +02:00
gsell 4fcc1ed3b3 .gitignore 
- *.dSYM added
 2015-10-16 15:58:12 +02:00
gsell 23bb1ced99 examples/H5Part/read_strided.c 
- bugfix in printing data
 2015-10-16 13:57:20 +02:00
gsell 1f629ee7f8 examples: 
- output format warnings fixed
 2015-10-15 17:29:18 +02:00
gsell 3c825fc71d src/Fortran/h5_private.h 
- we do not have Underscore.h any more
 2015-10-15 17:28:31 +02:00
gsell 089dc3e1ba src/Fortran: 
- debug output warnings fixed
 2015-10-15 17:27:51 +02:00
gsell 158fc17a2b src/h5core/h5t_octree_private.h 
- include 'mpi.h' if PARALLEL_IO is set
 2015-10-08 17:51:03 +02:00
gsell 149c144eee examples 
- several simple fixes
 2015-10-08 16:58:05 +02:00
gsell 4e42972ebb src/include/h5core/h5.h 
- typedef MPI_Comm to int if we compile serial code
- suppress warning about unused variables in definition of MPI_Comm_size() and MPI_Comm_rank()
 2015-10-08 16:57:12 +02:00
gsell 73c07240c2 .gitignore 
- more to ignore
 2015-10-08 16:28:47 +02:00
gsell e637522073 example/H5Fed 
- fixes
- adapted to new API
 2015-10-08 16:28:23 +02:00
gsell ec9626a0e5 src/h5core/h5t_xyz 
- get serial mesh working again
 2015-10-08 16:26:35 +02:00
gsell 86755932d9 src/h5core/h5_maps_private.h 
- indentation fixes
 2015-10-08 16:24:48 +02:00
gsell 95e21118e4 src/h5core/h5t_map_private.h 
- bugfix: we have to use a signed type for 'low', 'mid' and ' high'
 2015-10-08 16:23:46 +02:00
gsell 3fe0cc74be src/h5core/h5u_readwrite.c 
- include 'h5core/h5.h' added
 2015-10-08 16:19:23 +02:00
gsell 40c2c7d498 src/include/H5Fed_retrieve.h 
- bugfix in allocating iterators
 2015-10-08 16:17:48 +02:00
gsell cf067f7c56 src/include/h5core/h5.h 
- definition of UNUSED_ARGUMENTS() moved to 'src/h5core/h5_private.h'
 2015-10-08 16:14:09 +02:00
gsell 33129a4793 src/h5core/Makefile.am 
- bugfix: we have to compile grid stuff in any case
 2015-10-08 16:12:36 +02:00
gsell 41f2e87fc7 src/h5core/h5_module_private-h: 
- bugfix in serial version of h5priv_end_throttle()
 2015-10-08 16:11:01 +02:00
gsell 347a447302 configure.ac 
- fix problem with AC_PROG_CC/CXX
- define 'WITH_PARALLEL_H5GRID' on '--enable-experimental'
 2015-10-08 16:09:00 +02:00
gsell 03531ab4af src/h5core 
- h5priv_start_throttle() and h5priv_end_throttle() are now inline
  functions, whereby the serial version is just a dummy
 2015-09-11 14:41:52 +02:00
gsell 3d8ce28609 src/h5core/h5t_* 
- cleanup
 2015-09-11 14:12:01 +02:00
gsell cc719d116c src/h5core/h5u_models.c 
- correct error message in h5u_set_num_points()
 2015-09-11 14:11:23 +02:00
gsell 748eb1b3ab src/h5core/h5t_module.c: 
- compile error fixed in h5t_close_mesh()
 2015-09-11 14:10:25 +02:00
gsell f430c71d06 configure.ac and related Makefile.am's: 
- conditionally compile examples
 2015-09-11 14:09:05 +02:00
gsell 4a1d4d2d10 test/Makefile.am: 
- unused h5_attach_test stuff removed
 2015-09-11 14:04:53 +02:00
gsell 937d3f9c0e examples/H5Part/* 
- cleanup and fixes
 2015-09-11 14:04:12 +02:00
gsell 4d9d3dc879 examples/H5Part/... 
- bugfixes
 2015-09-09 18:25:27 +02:00
gsell 106be817d9 examples/H5Part 
- reviewed
 2015-09-08 20:53:07 +02:00
gsell ec3a29d7e4 src/Fortran/H5Part_model.c 
- adapted to refactored h5u_get_num_points()
 2015-09-08 20:52:19 +02:00
gsell c5ce2f06ac src/include/H5.f90: 
- typo fixed in function name h5_setprop_file_corevfd()
 2015-09-08 20:50:44 +02:00
gsell 992e8cf58e src/include/H5_const.f90 
- H5_DEBUG_* masks added
 2015-09-08 20:49:29 +02:00
gsell a618acf686 src/h5core/h5_errorhandling.c 
src/include/h5core/h5_errorhandling.h
- h5_error(), h5_warn(), h5_info(): print message if debug-level > 3
 2015-09-08 20:48:26 +02:00
gsell 47bee153ba src/h5core/h5_hdf5_private.h 
- minor changes in debug output
 2015-09-08 20:46:21 +02:00
gsell 390a4296b4 src/h5core/h5_hdf5.c 
- hdf5_get_name_of_dataset_by_idx(): bugfix, return H5_NOK, if dataset are in step
 2015-09-08 20:45:27 +02:00
gsell 4f7c666b1f src/h5core/h5u_module.c 
- refactore "*num_particles*" to "*num_points*"
- h5u_set_view() can now be used for writing, there are still some limitations
 2015-09-08 20:43:38 +02:00
gsell a620715ccc src/include/H5Part_io.h: 
- documentation update
 2015-09-08 17:50:06 +02:00
gsell 37bf9b35a6 src/h5core/h5_mpi_private.h: 
- all mpi wrappers are now inline
 2015-09-08 17:47:39 +02:00
gsell 2a7628c1e2 examples/H5Block/read_write_scalar_field.c: 
- write of 32-bit values added
 2015-09-03 17:27:47 +02:00
gsell 5a588415d0 Fortran H5Part examples: 
- read_canonicalviewf.f90 read_setnparticlesf.f90, read_setviewf.f90, read_stridedf.f90 implemented
 2015-09-03 17:26:54 +02:00
gsell d5fce5b2a0 examples/H5Part/write_{setviewf,stridedf}.f90: 
- bugfixes: take Fortran indexing into account
 2015-09-03 17:24:37 +02:00
gsell 7bf3985219 examples/H5Block/read_write_scalar_fieldf-f90: 
- bugfix: open file read-only
 2015-09-03 17:23:09 +02:00
gsell d939354990 example/H5/write_step_attribsf.f90: 
- bugfix
 2015-09-03 17:22:10 +02:00
gsell 8fb9834d3b C examples: 
- fix some comments
 2015-09-03 17:21:12 +02:00
gsell 2fd5d52125 src/Fortran/H5_modeul.c: 
- h5_hasstep(), h5_setstep(): decrement step number by 1
 2015-09-03 17:20:08 +02:00
gsell a1226feafd copyright notice fixed in examples 2015-09-03 13:31:29 +02:00
gsell cc7c558065 src/Fortran/H5.c: 
- conditionally compile h5_setprop_file_mpio_posix()
 2015-07-27 10:20:25 +02:00
gsell 51f90df374 Testprogramms for Fortran symbol name mangling removed 2015-07-24 18:38:58 +02:00
gsell 62c2d53324 Fortran symbol mangling simplified 2015-07-24 18:36:31 +02:00
gsell 8e9e0d84f3 change year in copyright 2015-07-23 14:59:43 +02:00
gsell d9daf9f0c7 src/h5core/h5u_module.c: 
- bugfix in h5u_set_canonical_view()
 2015-07-23 14:54:23 +02:00
gsell 559f2d8d9c test/*: 
- fix some warning if compiled serial
 2015-07-17 17:14:31 +02:00
gsell 403e535a50 ignore file edited. 2015-07-17 16:53:45 +02:00
gsell 14aa4fbd15 test/testframe.h: 
- set VERBO_HI to 65535
 2015-07-03 17:48:47 +02:00
gsell 319d7b4324 test/h5u_test.c: 
- cleanup
 2015-07-03 17:48:16 +02:00
gsell 4511fde9d1 bugfix: throttle only if VFD is MPIO independent or POSIX 2015-07-03 17:47:37 +02:00
gsell 707cafb2d8 src/h5core/h5u_model.c: 
- bugfix with h5u_set_view (0, -1)
 2015-07-03 17:45:49 +02:00
gsell 877b611758 test/testframe.c 
- initialize 'ret_value' in 'TestPrintf()' and 'TestErrPrintf()'
 2015-07-02 15:57:05 +02:00
gsell 9fb11ca838 no MPIO_POSIX in hdf5 > 1.8.12 2015-07-02 15:55:57 +02:00
gsell 7c2a315760 src/h5core/h5b_readwrite.c: fix early return in _select_hyperslab_for_writing() 2015-06-18 14:58:17 +02:00
gsell cc0135b4fc src/h5core/h5b_readwrite.c: 
- fix early return in  _select_hyperslab_for_writing()

# Conflicts:
#	src/h5core/h5b_readwrite.c
 2015-06-18 14:17:10 +02:00
gsell f47fbbf075 tools/vtk2h5grid/Makefile.am: fixes 2015-06-18 14:10:17 +02:00
gsell fd8c1e37b1 src/h5core/h5b_model.c: 
- bugfix in serial code of h5b_3d_set_view()

# Conflicts:
#	src/h5core/h5b_model.c
 2015-06-18 14:09:32 +02:00
Gsell Achim 4d770f8c84 option to shift mesh added 2015-06-18 13:51:40 +02:00
gsell 1f79b924df work on H5Block examples 2014-01-31 15:38:13 +01:00
gsell b1f143a5d7 src/examples/H5Block: ignore file added 2014-01-31 15:36:59 +01:00
gsell d6718bb866 examples/H5Part/read_canonicalviewf.f90: some fixes, but still broken 2014-01-31 15:34:20 +01:00
gsell 9deeacff51 copyright notice changed 2014-01-31 15:32:55 +01:00
gsell 5dbe8fb161 src/include/H5Block_attribs.f90: bugfix in declaration of h5bl_writefieldattrib_string() 2014-01-31 15:31:31 +01:00
gsell c3add7dde4 src/include/H5.f90: empty line removed 2014-01-31 15:30:46 +01:00
gsell 9d49361c43 some H5Block examples renamed 2014-01-31 15:29:10 +01:00
gsell 1a1878402c fixes in H5Part Fortran examples 2014-01-29 10:07:14 +01:00
gsell 069f9b64fc ignore file added to examples/H5Part 2014-01-29 10:05:15 +01:00
gsell ca6b4cc52d names of Fortran API header files fixed 2014-01-29 08:57:37 +01:00
gsell 60df95b10a most missing functions added to Fortran API 2014-01-28 17:31:22 +01:00
gsell d508f9e591 include/H5_attribs.h: reorder declarations 2014-01-28 17:30:00 +01:00
gsell 36702c6207 macros defining the names of internal attributes moved to public core file 2014-01-28 17:28:08 +01:00
gsell fa091cc2ab Fortran API files for H5Part data model renamed 2014-01-28 14:44:57 +01:00
gsell 1121a22956 Fortran API files for H5Block model renamed 2014-01-28 14:06:09 +01:00
gsell d5b8a4c0c8 ignore file edited 2013-11-15 16:50:32 +01:00
gsell 1cc3614c74 Fortran stubs added 2013-11-15 16:49:10 +01:00
gsell ca5f4abc7c comment for zero-sized selections reviewed 2013-11-15 16:46:36 +01:00
gsell 9d3c006409 MPI rank variable renamed to comm_rank 2013-11-15 16:45:06 +01:00
gsell d79d0ddf1a basic read_strided example implemented 2013-11-15 16:44:07 +01:00
gsell a1ad62bc74 'use_core_vfd.c' renamed to 'write_core_vfd.c' 2013-10-31 15:32:32 +01:00
gsell 950bcef057 explicit set of verbosity level to default; refactor variables for MPI communicator size and rank to 'comm_size' and 'comm_rank' 2013-10-31 15:30:43 +01:00
gsell 468a5d6871 H5Part examples reviewed 2013-10-31 13:44:06 +01:00
gsell cf09862f4b ignore file updated 2013-10-31 13:42:07 +01:00
gsell 6b6f290ebb MPI initialization added to vtk2h5grid.cc 2013-10-31 13:41:09 +01:00
gsell c8eecb51ae typo in filename 'examples/H5Part/use_core_vfd.c' fixed 2013-10-31 13:39:40 +01:00
gsell 23c2bdd189 typo in filename 'examples/H5Part/use_core_vfd.c' fixed 2013-10-31 13:38:27 +01:00
gsell 3e69059afc macro H5_VERBOSE_DEFAULT defined 2013-10-28 18:28:19 +01:00
gsell a6f81be2cd h5u_set_view() supports zero particle selections now, h5u_set_view_start_length() renamed to h5u_set_view_length() 2013-10-28 18:26:59 +01:00
gsell 89b91d6b46 --with-vtk added to configure.ac 2013-10-28 18:23:09 +01:00
gsell 4975de7a74 ignore list edited 2013-10-10 17:10:23 +02:00
gsell 3fe4c39e5e fix renamed macros in tests 2013-10-10 17:10:05 +02:00
gsell 89bb9ef48c missing set file property functions implemented, bugfixes 2013-10-10 17:08:32 +02:00
gsell d15993ecdc missing file property functions added 2013-10-10 17:03:13 +02:00
gsell da723dda5e missing file property functions added 2013-10-10 17:02:39 +02:00
gsell 0dcc666e5e more work on examples 2013-10-10 17:00:44 +02:00
gsell 61d17a352f same examples renamed 2013-10-10 16:56:25 +02:00
gsell 006e1cda4a examples Bench.c, H5test.c and H5testF.f90 removed 2013-09-26 16:47:51 +02:00
gsell 11e399b6c7 C and Fortran examples reviewed, new examples added 2013-09-26 15:59:09 +02:00
gsell e839226f2b unit tests adapted to new API 2013-09-26 15:54:47 +02:00
gsell 2702f846cb old file open API removed 2013-09-26 15:53:54 +02:00
gsell ee23c8cc4b Fortran API review 2013-09-26 15:51:49 +02:00
gsell c3a74c8ed4 functions added to query attributes by name 2013-09-26 15:47:43 +02:00
gsell 969acd3642 definition of H5_MAX_NAME_LEN moved to public API 2013-09-26 15:38:54 +02:00
gsell ee07f01abd C header files specified with full path 2013-09-26 15:23:54 +02:00
gsell 06f0a8b4e7 compile with -O3 if debug is disabled, compile with -Wall in always 2013-09-26 15:20:45 +02:00
gsell 205a1a5c37 .gitignore added 2013-09-02 11:20:16 +02:00
gsell 7174b36a20 fixes to Fortran API 2013-09-02 09:31:14 +02:00
gsell 273b1831d9 fixes to autotool files 2013-09-02 09:30:23 +02:00
gsell 83c5a66814 handle MPI compiler on NERSC system 2013-07-11 12:18:53 +00:00
gsell db81cb3d33 attachment test moved to examples 2013-07-11 07:50:57 +00:00
gsell 4a8eedd31e autotool fixes 2013-07-10 14:05:21 +00:00
gsell 11a1cc7c1e reformated 2013-07-10 14:04:53 +00:00
gsell a509000711 warnings popped up on Linux fixed 2013-07-05 14:45:47 +00:00
gsell a65ee3bbb7 bugfixes 2013-07-04 14:58:18 +00:00
gsell f69ee003f6 ignore list edited 2013-06-27 16:27:46 +00:00
gsell 0b18373f8c bugfixes 2013-06-27 16:25:09 +00:00
gsell 311cdad1c8 bugfix 2013-06-27 16:24:02 +00:00
gsell 6f84edd791 autotool cleanup and fixes 2013-06-27 16:21:18 +00:00
gsell 1614f9519b autotool cleanup and fixes 2013-06-27 16:20:43 +00:00
gsell 65757c1974 bug fixes, some private functions renamed, formating changes 2013-06-27 16:18:08 +00:00
gsell 80523c6df7 examples fixed 2013-06-27 16:14:22 +00:00
gsell f17f1d028c fixes for building outside source tree 2013-05-02 14:14:26 +00:00
gsell 78078c322e definitions for H5_VERBOSE_{NONE,ERROR,WARN,INFO} added 2013-05-02 14:12:43 +00:00
gsell 1284d545e1 ported to new API 2013-05-02 14:11:06 +00:00
gsell 96af35450a added something to NEWS (still work in progress) 2013-05-02 14:09:22 +00:00
gsell 5abb40125b new trunk merged from old trunk, Roman's master thesis and my changes in the sandbox 2013-04-12 12:32:58 +00:00
729 changed files with 275809 additions and 24177 deletions
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py-compile
examples/H5/attach_file
examples/H5/examples.h
examples/H5/h5hut.mod
examples/H5/openclose
examples/H5/openclosef
examples/H5/query
examples/H5/queryf
examples/H5/read_file_attribs
examples/H5/read_file_attribsf
examples/H5/read_step_attribs
examples/H5/read_step_attribsf
examples/H5/write_file_attribs
examples/H5/write_file_attribsf
examples/H5/write_step_attribs
examples/H5/write_step_attribsf
examples/H5Block/H5BlockExampleF
examples/H5Block/fields
examples/H5Block/read_write
examples/H5Part/Bench
examples/H5Part/H5test
examples/H5Part/H5testF
examples/H5Part/core_vfd
examples/H5Part/examples.h
examples/H5Part/h5hut.mod
examples/H5Part/particles
examples/H5Part/read_canonicalview
examples/H5Part/read_setnparticles
examples/H5Part/read_setview
examples/H5Part/read_strided
examples/H5Part/write_core_vfd
examples/H5Part/write_setnparticles
examples/H5Part/write_setnumparticles
examples/H5Part/write_setview
examples/H5Part/write_setviewf
examples/H5Part/write_strided
has_field
install-sh
libtool
ltmain.sh
m4/
missing
src/Fortran/TestUnderscore
src/Fortran/Underscore.h
src/include/H5hut.f
src/include/H5hutF.h
stamp-h1
test/h5b_test
test/h5u_test
test/h5_attach_test
tools/h5hutcc
tetmesh_adjacencies
tetmesh_read
tetmesh_read_tags
tetmesh_write
tetmesh_write1
examples/H5Fed/tetmesh_write2
examples/H5Fed/trimesh_2gnuplot
examples/H5Fed/trimesh_adjacencies
examples/H5Fed/trimesh_read
examples/H5Fed/trimesh_write
examples/H5Fed/trimesh_write_dunetest
tetmesh_write_tags
write_field
*.gch
ReferencePages
vtk2h5grid
AUTHORS
+1 -2
View File
@@ -6,6 +6,5 @@ Benedikt Oswald (PSI)
Wes Bethel (NERSC/LBNL)
John Shalf (NERSC/LBNL)
Cristina Siegerist (NERSC/LBNL)
Mark Howison (NERSC/LBNL)
Please use h5part@lists.psi.ch for communicaion.
Please use h5part@lists.psi.ch for communication.
COPYING
+2 -2
View File
@@ -1,6 +1,6 @@
*** Copyright Notice ***
H5Part Copyright (c) 2006-2009, The Regents of the University of California,
H5hut Copyright (c) 2006-2016, The Regents of the University of California,
through Lawrence Berkeley National Laboratory (subject to receipt of any
required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
Institut (Switzerland). All rights reserved.
@@ -25,7 +25,7 @@ and to permit others to do so.
*** License agreement ***
H5Part Copyright (c) 2006-2009, The Regents of the University of California,
H5hut Copyright (c) 2006-2016, The Regents of the University of California,
through Lawrence Berkeley National Laboratory (subject to receipt of any
required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
Institut (Switzerland). All rights reserved.
GNUmakefile.orig
-133
View File
@@ -1,133 +0,0 @@
UNAME := $(shell uname | perl -pe 's/(sn\d\d\d\d|jsimpson)/UNICOS\/mk/')
# for host specific options
HOST := $(shell hostname)
# for processor-specific options
ifeq ($(UNAME), Linux)
PROC := $(shell uname -p)
endif
CXX = c++
CC = cc
H5HOME = /usr/local/hdf5
CFLAGS = -g -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# MacOS-X Serial
ifeq ($(UNAME), Darwin)
ifeq ($(PARALLEL), yes)
CXX = g++
CC = mpicc
H5HOME = /usr/local
CFLAGS = -O -g -I$(H5HOME)/include -DPARALLEL_IO
LDFLAGS = -L$(H5HOME)/lib -lmpich -lpmpich -lhdf5 -lz -lm
else
CXX = c++
CC = cc
F90 = xlf
H5HOME = /usr/local
CFLAGS = -O -g -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
endif
endif
# SGI MIPS/Irix
ifeq ($(UNAME), IRIX64)
CXX = CC
CC = cc
F90 = f90
ifeq ($(PARALLEL), yes)
H5HOME = $(HDF5_DIR)
CFLAGS = -64 -O3 -I$(H5HOME)/include -DPARALLEL_IO
LDFLAGS = -64 -O3 -L$(H5HOME)/lib -lhdf5 -lz -lmpi -lm
else
H5HOME = /usr/local
CFLAGS = -O3 -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
endif
endif
# AIX/SP-2 Parallel/serial : Seaborg
ifeq ($(UNAME), AIX)
ifeq ($(PARALLEL), yes) # parallel
CXX = mpCC_r
CC = mpxlc_r
# H5HOME = /usr/common/usg/hdf5_64/1.4.5-post2/parallel
H5HOME = /usr/common/usg/hdf5_64/1.6.1/parallel
# /usr/common/usg/hdf5/1.4.4/parallel
H4HOME = /usr/common/usg/hdf/default
OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
CFLAGS = -q64 -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lsz -lm
else # serial
CXX = xlC
CC = xlc
H5HOME = /usr/common/usg/hdf5/1.4.4/serial
H4HOME = /usr/common/usg/hdf/default
OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
CFLAGS = -g -bmaxdata:800000000 -bmaxstack:256000000 -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lm
endif
endif
# Linux
ifeq ($(UNAME), Linux)
# if this machine is NERSC/Davinci Altix system
ifeq ($(PROC), ia64)
CC = icc
CXX = icc
ifeq ($(PARALLEL), yes)
# IA64 Linux Parallel
ifeq ($(HOST), davinci)
H5HOME = $(HDF5_PAR)
MPILIB = -lmpi
else
H5HOME = /usr/local
HDF5_PAR_LIB = -L$(H5HOME)/lib -lhdf5 -lz -lm
HDF5_PAR_INCLUDE = -I$(H5HOME)/include
MPIHOME = /usr/local
MPILIB = -lmpich
endif # HOST
CFLAGS = -O3 -DPARALLEL_IO -DH5_HAVE_PARALLEL $(HDF5_PAR_INCLUDE)
LDFLAGS = $(HDF5_PAR_LIB) $(MPILIB)
else # IA64 Linux Serial
CFLAGS = -O3 $(HDF5_INCLUDE)
LDFLAGS = $(HDF5_LIB) -lm
endif # PARALLEL
# else this is standard IA32 linux
else
ifeq ($(PARALLEL), yes)
# Linux Parallel
CC = gcc
CXX = g++
H5HOME = /usr/local
MPIHOME = /usr/local
CFLAGS = -O -g -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lmpich -lrt -lz -lm
else # Linux Serial
CXX = g++
CC = gcc
CFLAGS = -O -g -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
endif # !PARALLEL
endif # PROC!ia64
endif # !Linux
ifeq ($(PARALLEL), yes) #parallel
ifdef F90
all: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest H5PartF.o
else
all: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest
endif
else
ifdef F90
all: H5PartTest H5PartTest.o H5Part.o H5PartF.o
else
all: H5PartTest H5PartTest.o H5Part.o
endif
endif
include rules.make
INSTALL
-437
View File
@@ -1,437 +0,0 @@
==============================================================================
README file for H5Part configure
==============================================================================
+ 0. HDF5 library
-----------------
Make sure you have a working version of the HDF5 library installed. If you plan
to use parallel I/O you need to use a parallel HDF5 version. Source files and
installation instructions are available from the HDF5 website:
http://www.hdfgroup.org/HDF5/
+ 1. Quick start (If you feel lucky...)
----------------------------------------
For many platforms, where compilers are installed in the "default" location
and all the environment variables are set correctly, it should be sufficient
to type:
./configure [OPTIONS] && make [install]
to have the libraries and test program compiled.
+ 2. Configure line options
----------------------------
To view a full list of configure option, use:
./configure --help
(1) Enable options
--enable-fortran
--enable-parallel
--enable-tools
--enable-python
--enable-64 (only for AIX and Irix)
(2) Setting compilers related variables manually
To assign environment variables (e.g., CC, CFLAGS...), specify them as
VAR=VALUE before running configure. For example, if you are using the bash
shell, you might type:
export CC=gcc
to set the default C compiler. See below for descriptions of some useful
variables.
Compiler environment variables:
CC C compiler command
CXX C++ compiler command
FC Fortran compiler command
MPICC MPI-enabled C compiler command
MPICXX MPI-enabled C++ compiler command
MPIFC MPI-enabled Fortran compiler command
CFLAGS flags to append when invoking the C compiler
Library environment variables:
LDFLAGS flags to append when invoking the linker
(3) Setting prefix for installation manually (by default, the package will
install itself in the 'build' subdirectory of your source directory)
--prefix=PREFIX install files in PREFIX
+ 3. Platform specific settings for compiling libraries & test programs
------------------------------------------------------------------------
Building
make : builds the libraries and test programs
make install: builds and installs
make clean : removes extraneous object files
make distclean : returns configuration to unconfigured state
As tested on hosts:
(0) Franklin <franklin.nersc.gov> (CNL - Cray XT4)
--------------------------------------------------
module add hdf5_par
module add zlib
module add szip
export CC=cc CXX=CC FC=ftn MPICC=cc MPICXX=CC MPIFC=ftn
export LDFLAGS=$HDF5
./configure --enable-fortran --enable-parallel --with-hdf5path=$HDF5_PAR_DIR --with-mpiposix
make install
(1) Davinci <davinci.nersc.gov> (Linux"SUSE"-ia64)
---------------------------------------------------
FIRST THING FIRST!! Type:
module load intel
to have the proper compilers set up for use.
module load hdf5_par
[NOTE: module load hdf5 does not work at this moment.
Possible installation error of HDF5 on Davinci.]
Brief profile:
CC = icc
CXX = icc
FC = ifort
MPICC = icc
MPICXX = icc
MPIFC = ifort
If default doesn't work, try:
For C shell:
env CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure && make install
For Korn or Bourne shell:
CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure --enable-fortran --enable-parallel && make install
For Korn or Bourne shell:
CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure --enable-fortran --enable-parallel && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(ii) Parallel test
run:
mpirun 2 H5testFpar
mpirun 2 H5PartTestP
NOTE: Number 2 above is a arbitrary number that indicates the number of processes.
(2) Jacquard <jacquard.nersc.gov> (Linux"SUSE"-x86_64)
-------------------------------------------------------
Brief profile:
CC = pathcc
CXX = pathCC
FC = pathf90
MPICC = mpicc
MPICXX = mpicxx
MPIFC = mpif90
If default doesn't work, try:
For C shell:
env CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure && make install
For Korn or Bourne shell:
CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure --enable-fortran --enable-parallel && make install
For Korn or Bourne shell:
CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure --enable-fortran --enable-parallel && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(ii) Parallel test
In Jacquard, we need a script to run parallel programs, since Jacquard does not support interactive parallel processing. Instead, we need to submit the task to a queue. A sample script (run_H5testFpar.scr) may look like below:
+++++++++++++++++++++++++++++++++++++++
#!/bin/csh
#PBS -l nodes=1:ppn=2,walltime=00:05:00
#PBS -N H5testFpar
#PBS -o H5testFpar.out
#PBS -e H5testFpar.err
#PBS -q debug
#PBS -A mpccc
#PBS -V
setenv PBS_OWORKDIR /home/H5Part/test
cd $PBS_O_WORKDIR
mpirun -np 2 ./H5testFpar
+++++++++++++++++++++++++++++++++++++++
Then, we need to submit the task to a queue by running:
qsub run_H5testFpar.scr
After processed, the result will appear in H5testFpar.out, and error messages will appear in H5testFpar.err.
(3) Bassi <bassi.nersc.ogv> (AIX5.3.0.0-Power 3)
-------------------------------------------------
FIRST THING FIRST!! Type:
module load gcc
to have the proper compilers set up for use.
Brief profile:
CC = cc_r
CXX = cc_r
FC = xlf_r
MPICC = mpcc_r
MPICXX = mpcc_r
MPIFC = mpxlf_r
If default doesn't work, try:
For C shell:
env CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure && make install
For Korn or Bourne shell:
CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure --enable-fortran --enable-parallel && make install
For Korn or Bourne shell:
CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure --enable-fortran --enable-parallel && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(ii) Parallel test
run:
unsetenv MP_SINGLE_THREAD
poe ./H5PartTestP -procs 2 -nodes 1
poe ./H5testFpar -procs 2 -nodes 1
For more details on how to run parallel programs on Bassi, go to:
http://www.nersc.gov/nusers/resources/bassi/running_jobs/
(4) Starsky <starsky.lbl.gov> (Darwin8.5.0-PowerPC)
----------------------------------------------------
FIRST THING FIRST!! Set environment variables: (in tcsh)
setenv LD_LIBRARY_PATH /usr/local/g95/lib/gcc-lib/powerpc-apple-darwin8.5.0/4.0.3/
setenv PATH ${PATH}:/usr/local/g95/bin
NOTE: This environment variable setting is specifit to Starsky. It is to make configure find the fortran compiler.
Brief profile:
CC = gcc
CXX = g++
FC = g95
If default doesn't work, try:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(5) Linux AMD64 Visualization group workstations (Linux"SUSE"-x86_64)
---------------------------------------------------------
Brief profile:
CC = gcc
CXX = g++
FC = g95
If default doesn't work, try:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(6) Cray XT3 @ CSCS gele
1) modules/3.1.6 9) PrgEnv-pgi/1.4.26 17) xt-lustre-ss/1.4.26
2) MySQL/4.0.26 10) xt-pbs/5.3.4 18) Base-opts/1.4.26
3) acml/3.0 11) xt-service/1.4.26 19) subversion/1.3.2
4) pgi/6.1.4 12) xt-libc/1.4.26 20) zlib/1.2.3
5) totalview/7.2.0 13) xt-os/1.4.26 21) szip/2.0
6) xt-libsci/1.4.26 14) xt-catamount/1.4.26 22) hdf5/1.6.5
7) xt-mpt/1.4.26 15) xt-boot/1.4.26
8) xt-pe/1.4.26 16) xt-crms/1.4.26
CFLAGS="-I$H5HOME/include -DF77_SINGLE_UNDERSCORE" LDFLAGS="-L$H5HOME/lib -L$ZHOME/lib" ./configure --enable-parallel --enable-fortran
(7) merlin00 / merlin3
Currently Loaded Modulefiles:
1) hdf5/hdf5-1.6.5 2) root/root-5.10.00 3) mpi/mpich2-1.0.3-pgi-6.1 4) pgi/pgi_64-6.1
FC=mpif90 ./configure --enable-parallel --enable-fortran
==============================================================================
+ 4. Trouble shooting (Things to check for...)
--------------------------------------------
(0) Have you set the LD_LIBRARY_PATH?
---Some systems require the user to manually set the environment variable, LD_LIBRARY_PATH. To do so:
set the environment variable HDF5ROOT or PHDF5ROOT to point to your installation of HDF5 (serial and/or parallel respectively).
For Korn or Bourne shell:
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HDF5ROOT}/lib;export LD_LIBRARY_PATH
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:{PHDF5ROOT}/lib;export LD_LIBRARY_PATH
For C shell:
setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${HDF5ROOT}/lib
setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${PHDF5ROOT}/lib
Note that the values of HDF5ROOT & PHDF5ROOT will be in the "summary" section when you run configure.
Not properly set LD_LIBRARY_PATH value may result in a runtime error:
./H5PartTest: error while loading shared libraries: libhdf5.so.0: cannot open shared object file: No such file or directory
(1) Are the compilers set correctly?
---Check with: which COMPILER
(2) Have you installed HDF5?
---You can get it at: http://vis.lbl.gov/Research/AcceleratorSAPP/index.html
(3) Have you loaded the proper modules?
---It is necessary in Davinci & Bassi, and configure && make install may not work without it.
Makefile.am
+16 -11
View File
@@ -1,14 +1,19 @@
ACLOCAL_AMFLAGS=-I m4
ACLOCAL_AMFLAGS = -I m4
EXTRA_DIST = autogen.sh
SUBDIRS = \
doc \
src \
test \
tools
SUBDIRS = \
src \
test \
tools \
doc \
examples/H5 \
examples/H5Part \
examples/H5Block \
examples/H5Fed
MAINTAINERCLEANFILES = \
config.h \
config.log \
config.status \
stamp-h.in \
MAINTAINERCLEANFILES = \
config.h \
config.log \
config.status \
stamp-h.in \
stamp-h1
Makefile.orig
-59
View File
@@ -1,59 +0,0 @@
# This is a very rudimentary multiarchitecture makefile
# You need to uncomment the default block of make variables you need
# Some key things to watch for are the following defines
# -DREGRESSIONTEST : enables a main(){} inside of
# the H5Part.cc file that does simple regression testing.
# -DPARALLEL_IO : If you want to use parallel HDF5, you have to
# enable this. Otherwise, you get only the serial
# implementation of the library.
# MacOS-X Serial
#CXX = c++
#CC = cc
#F90 = xlf
#H5HOME = /usr/local
#CFLAGS = -O -g -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# AIX/SP-2 Parallel : Seaborg
#CXX = mpCC_r
#CC = mpcc_r
#F90 = mpxlf
#H5HOME = /usr/common/usg/hdf5/1.4.4/parallel
#H4HOME = /usr/common/usg/hdf/default
#OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
#CFLAGS = -g -bmaxdata:800000000 -bmaxstack:256000000 -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lm
# Linux Serial
#CXX = g++
#CC = gcc
#F90 = g77 # or could be pgif90
#CFLAGS = -O -g -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# Linux Jacquard
CC = mpicc
CXX = mpicxx
F90 = mpif90
H5HOME = /usr/common/usg/hdf5/1.6.3/parallel
CFLAGS = -O2 -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# Linux Parallel
#CC = gcc
#CXX = g++
#F90 = g77
#H5HOME = /usr/local
# /usr/common/usg/hdf5/1.6.3/parallel
#MPIHOME = /usr/local
#CFLAGS = -O -g -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lmpich -lrt -lz -lm
all: H5PartTest H5PartTest.o H5Part.o
parallel: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest # parallel regression tests
fortran: H5PartF.o # fortran bindings
include rules.make
NEWS
+47
View File
@@ -1,3 +1,50 @@
#### H5PART trunk ############################################################
* h5_file_t is now uintptr_t
* experimental version of parallel H5Fed
* new API function for file open using properties (similiar to hdf5 properties)
#### H5PART 1.99.10 ############################################################
* C99 compiler required
* C API with inline functions
#### H5PART 1.99.0 ############################################################
rudimental implementation of a grid manager
Important changes from version 1.6 to 1.99.0
Renamed type:
H5PartFile -> h5_file_t
h5part_int64_t -> h5_int64_t
h5part_float64_t -> h5_float_t
Renamed functions:
All function not related to a specific data model have been renamed from
H5PartFunction() to H5Function().
Example:
H5PartOpenFile() -> H5OpenFile()
Removed functions:
To simplify the API, there is just one function to open a file. It's the
same function for serial and parallel code.
#### H5PART 1.6.6 ############################################################
Fixed typo (Write instead of Read) in the h5bl_3d_read_scalar_field* Fortran
interface.
Added missing type normalization for int32 type.
Rewrite of h5pAttrib tool.
#### H5PART 1.6.5 ############################################################
Fixed several build errors reported by Iuri Prilepov on Ubuntu 11.04.
#### H5PART 1.6.4 ############################################################
Fixed bug where H5PartSetViewIndices was not setting an empty view when the
README
-29
View File
@@ -1,29 +0,0 @@
Website:
http://vis.lbl.gov/Research/AcceleratorSAPP/
Particle based simulations of accelerator beam-lines, especially in six
dimensional phase space, generate vast amounts of data. Even though a subset of
statistical information regarding phase space or analysis needs to be preserved,
reading and writing such enormous restart files on massively parallel
supercomputing systems remains challenging.
H5Part is a very simple data storage schema and provides an API that simplifies
the reading/writing of the data to the HDF5 file format. An important
foundation for a stable visualization and data analysis environment is a stable
and portable file storage format and its associated APIs. The presence of a
"common file storage format," including associated APIs, will help foster a
fundamental level of interoperability across the project's software
infrastructure. It will also help ensure that key data analysis capabilities
are present during the earliest phases of the software development effort.
H5Part is built on top of the HDF5 (Hierarchical Data Format). HDF5 offers a
self-describing machine-independent binary file format that supports scalable
parallel I/O performance for MPI codes on a variety of supercomputing systems,
and works equally well on laptop computers. The API is available for C, C++, and
Fortran codes. The H5Part file format and APIs enable disparate research groups
with different simulation implementations to transparently share datasets and
data analysis tools. For instance, the common file format will enable groups
that depend on completely different simulation implementations to share data
analysis tools.
autogen.sh
+1 -1
View File
@@ -1,7 +1,7 @@
#!/bin/sh
# Run this to generate all the initial makefiles, etc.
ACLOCAL_FLAGS="-I m4 $ACLOCAL_FLAGS"
ACLOCAL_FLAGS="-I m4 -I . $ACLOCAL_FLAGS"
LIBTOOLIZE_FLAGS="--force $LIBTOOLIZE_FLAGS"
AUTOMAKE_FLAGS="--add-missing --copy --foreign $AUTOMAKE_FLAGS"
ax_pkg_swig.m4
+135
View File
@@ -0,0 +1,135 @@
# ===========================================================================
# http://www.gnu.org/software/autoconf-archive/ax_pkg_swig.html
# ===========================================================================
#
# SYNOPSIS
#
# AX_PKG_SWIG([major.minor.micro], [action-if-found], [action-if-not-found])
#
# DESCRIPTION
#
# This macro searches for a SWIG installation on your system. If found,
# then SWIG is AC_SUBST'd; if not found, then $SWIG is empty. If SWIG is
# found, then SWIG_LIB is set to the SWIG library path, and AC_SUBST'd.
#
# You can use the optional first argument to check if the version of the
# available SWIG is greater than or equal to the value of the argument. It
# should have the format: N[.N[.N]] (N is a number between 0 and 999. Only
# the first N is mandatory.) If the version argument is given (e.g.
# 1.3.17), AX_PKG_SWIG checks that the swig package is this version number
# or higher.
#
# As usual, action-if-found is executed if SWIG is found, otherwise
# action-if-not-found is executed.
#
# In configure.in, use as:
#
# AX_PKG_SWIG(1.3.17, [], [ AC_MSG_ERROR([SWIG is required to build..]) ])
# AX_SWIG_ENABLE_CXX
# AX_SWIG_MULTI_MODULE_SUPPORT
# AX_SWIG_PYTHON
#
# LICENSE
#
# Copyright (c) 2008 Sebastian Huber <sebastian-huber@web.de>
# Copyright (c) 2008 Alan W. Irwin
# Copyright (c) 2008 Rafael Laboissiere <rafael@laboissiere.net>
# Copyright (c) 2008 Andrew Collier
# Copyright (c) 2011 Murray Cumming <murrayc@openismus.com>
#
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 2 of the License, or (at your
# option) any later version.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program. If not, see <http://www.gnu.org/licenses/>.
#
# As a special exception, the respective Autoconf Macro's copyright owner
# gives unlimited permission to copy, distribute and modify the configure
# scripts that are the output of Autoconf when processing the Macro. You
# need not follow the terms of the GNU General Public License when using
# or distributing such scripts, even though portions of the text of the
# Macro appear in them. The GNU General Public License (GPL) does govern
# all other use of the material that constitutes the Autoconf Macro.
#
# This special exception to the GPL applies to versions of the Autoconf
# Macro released by the Autoconf Archive. When you make and distribute a
# modified version of the Autoconf Macro, you may extend this special
# exception to the GPL to apply to your modified version as well.
#serial 11
AC_DEFUN([AX_PKG_SWIG],[
# Ubuntu has swig 2.0 as /usr/bin/swig2.0
AC_PATH_PROGS([SWIG],[swig swig2.0])
if test -z "$SWIG" ; then
m4_ifval([$3],[$3],[:])
elif test -n "$1" ; then
AC_MSG_CHECKING([SWIG version])
[swig_version=`$SWIG -version 2>&1 | grep 'SWIG Version' | sed 's/.*\([0-9][0-9]*\.[0-9][0-9]*\.[0-9][0-9]*\).*/\1/g'`]
AC_MSG_RESULT([$swig_version])
if test -n "$swig_version" ; then
# Calculate the required version number components
[required=$1]
[required_major=`echo $required | sed 's/[^0-9].*//'`]
if test -z "$required_major" ; then
[required_major=0]
fi
[required=`echo $required | sed 's/[0-9]*[^0-9]//'`]
[required_minor=`echo $required | sed 's/[^0-9].*//'`]
if test -z "$required_minor" ; then
[required_minor=0]
fi
[required=`echo $required | sed 's/[0-9]*[^0-9]//'`]
[required_patch=`echo $required | sed 's/[^0-9].*//'`]
if test -z "$required_patch" ; then
[required_patch=0]
fi
# Calculate the available version number components
[available=$swig_version]
[available_major=`echo $available | sed 's/[^0-9].*//'`]
if test -z "$available_major" ; then
[available_major=0]
fi
[available=`echo $available | sed 's/[0-9]*[^0-9]//'`]
[available_minor=`echo $available | sed 's/[^0-9].*//'`]
if test -z "$available_minor" ; then
[available_minor=0]
fi
[available=`echo $available | sed 's/[0-9]*[^0-9]//'`]
[available_patch=`echo $available | sed 's/[^0-9].*//'`]
if test -z "$available_patch" ; then
[available_patch=0]
fi
# Convert the version tuple into a single number for easier comparison.
# Using base 100 should be safe since SWIG internally uses BCD values
# to encode its version number.
required_swig_vernum=`expr $required_major \* 10000 \
\+ $required_minor \* 100 \+ $required_patch`
available_swig_vernum=`expr $available_major \* 10000 \
\+ $available_minor \* 100 \+ $available_patch`
if test $available_swig_vernum -lt $required_swig_vernum; then
AC_MSG_WARN([SWIG version >= $1 is required. You have $swig_version.])
SWIG=''
m4_ifval([$3],[$3],[])
else
AC_MSG_CHECKING([for SWIG library])
SWIG_LIB=`$SWIG -swiglib`
AC_MSG_RESULT([$SWIG_LIB])
m4_ifval([$2],[$2],[])
fi
else
AC_MSG_WARN([cannot determine SWIG version])
SWIG=''
m4_ifval([$3],[$3],[])
fi
fi
AC_SUBST([SWIG_LIB])
])
configure-crayxt
-20
View File
@@ -1,20 +0,0 @@
#!/bin/sh
F90=gfortran
./configure \
$@ \
--enable-parallel \
--enable-fortran \
--enable-tools \
CC=cc CXX=CC FC=$F90 \
MPICC=cc MPICXX=CC MPIFC=ftn
sed -e 's/$F90/ftn/g' <Makefile > newMakefile
mv newMakefile Makefile
sed -e 's/$F90/ftn/g' <src/Makefile > newMakefile
mv newMakefile src/Makefile
sed -e 's/$F90/ftn/g' <test/Makefile > newMakefile
mv newMakefile test/Makefile
sed -e 's/$F90/ftn/g' <tools/Makefile > newMakefile
mv newMakefile tools/Makefile
configure.ac
+358 -215
View File
@@ -1,58 +1,143 @@
# Every configure script must call AC_INIT before doing anything else.
# AC_INIT (package, version, [bug-report], [tarname])
AC_INIT([H5Part], [1.6.4], [h5part@lists.psi.ch], H5Part)
# Ensure that a recent enough version of Autoconf is being used.
# If the version of Autoconf being used to create configure is earlier than version,
# print an error message to the standard error output and do not create configure.
AC_PREREQ(2.59)
# should be called right after AC_INIT.
# configure scripts can create a C header file containing `#define' directives.
# The AC_CONFIG_HEADERS macro selects this kind of output.
#
# Copyright (c) 2006-2016, The Regents of the University of California,
# through Lawrence Berkeley National Laboratory (subject to receipt of any
# required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
# Institut (Switzerland). All rights reserved.
#
# License: see file COPYING in top level of source distribution.
#
AC_INIT([H5hut], [2.0.0rc2], [h5part@lists.psi.ch], H5hut)
AC_PREREQ(2.60)
AC_CONFIG_HEADERS(config.h)
AC_CONFIG_MACRO_DIR([m4])
# AM_INIT_AUTOMAKE is required to use autoconf with automake
AM_INIT_AUTOMAKE
BUILD_LIBS='libH5Part'
BUILD_TESTS='test'
ENABLE_DEBUG='no'
ENABLE_C='yes'
ENABLE_FORTRAN='no'
ENABLE_PARALLEL='no'
ENABLE_PYTHON='no'
###############################################################################
################# --enable-xxx and --with-xxx Argument ########################
###############################################################################
# --enable-xxx and --with-xxx Arguments
AC_ARG_ENABLE(
[debug],
[AC_HELP_STRING([--enable-debug],
[Compile with debug flags [default=no]])],
[USE_DEBUG=$enableval])
[AS_HELP_STRING([--enable-debug], [Compile with debug flags [default=no]])],
[ENABLE_DEBUG=$enableval])
AM_CONDITIONAL([ENABLE_DEBUG], [test "$ENABLE_DEBUG" = "yes"])
AC_ARG_ENABLE(
[c],
[AS_HELP_STRING([--enable-c],
[Compile the C interface [default=yes]])],
[ENABLE_C=$enableval])
AM_CONDITIONAL([ENABLE_C], [test "$ENABLE_C" = "yes"])
AC_ARG_ENABLE(
[fortran],
[AC_HELP_STRING([--enable-fortran],
[AS_HELP_STRING([--enable-fortran],
[Compile the Fortran interface [default=no]])],
[USE_FORTRAN=$enableval])
[ENABLE_FORTRAN=$enableval])
AM_CONDITIONAL([ENABLE_FORTRAN], [test "$ENABLE_FORTRAN" = "yes"])
AC_ARG_ENABLE(
[python],
[AS_HELP_STRING([--enable-python],
[Compile the Python interface [default=no]])],
[ENABLE_PYTHON=$enableval])
AM_CONDITIONAL([ENABLE_PYTHON], [test "$ENABLE_PYTHON" = "yes"])
AC_ARG_ENABLE(
[parallel],
[AC_HELP_STRING([--enable-parallel],
[AS_HELP_STRING([--enable-parallel],
[Compile the MPI/IO interface [default=no]])],
[USE_PARALLEL=$enableval])
[ENABLE_PARALLEL=$enableval])
AM_CONDITIONAL([ENABLE_PARALLEL], [test "$ENABLE_PARALLEL" = "yes"])
AC_ARG_ENABLE(
[tools],
[AC_HELP_STRING([--enable-tools],
[Compile h5part tools [default=no]])],
[USE_TOOLS=$enableval])
[large-indices],
[AC_HELP_STRING([--enable-large-indices],
[Compile with 64bit local IDs and indices [default=no]])],
[USE_LARGE_INDICES=$enableval])
AC_ARG_ENABLE(
[experimental],
[AS_HELP_STRING([--enable-experimental],
[Compile experimental code [default=no]])],
[ENABLE_EXPERIMENTAL=$enableval])
AM_CONDITIONAL([ENABLE_EXPERIMENTAL], [test "$ENABLE_EXPERIMENTAL" = "yes"])
AC_ARG_ENABLE(
[vtkconverter],
[AS_HELP_STRING([--enable-vtkconverter],
[Compile the vtk to H5hut converter for grids [default=no]])],
[ENABLE_VTKCONVERTER=$enableval])
AM_CONDITIONAL([ENABLE_VTKCONVERTER], [test "$ENABLE_VTKCONVERTER" = "yes"])
AC_ARG_ENABLE(
[examples],
[AS_HELP_STRING([--enable-examples],
[Compile the H5hut examples [default=no]])],
[ENABLE_EXAMPLES=$enableval])
AM_CONDITIONAL([ENABLE_EXAMPLES], [test "$ENABLE_EXAMPLES" = "yes"])
AC_ARG_WITH(
[hdf5],
[AC_HELP_STRING([--with-hdf5],
[AS_HELP_STRING([--with-hdf5],
[path to HDF5 installation [default=""]])],
[HDF5PATH=$withval], [HDF5PATH=""])
[HDF5_PREFIX=$withval], [])
AC_ARG_WITH(
[mpi],
[AS_HELP_STRING([--with-mpi],
[path to MPI installation [default=""]])],
[PATH=$MPI_PREFIX/bin:$PATH])
AC_ARG_WITH(
[lustre],
[AS_HELP_STRING([--with-lustre],
[path to lustre user API [default=""]])],
[LUSTREPATH=$withval], [LUSTREPATH=""])
AC_ARG_WITH(
[parmetis],
[AC_HELP_STRING([--with-parmetis],
[path to ParMETIS API [default=""]])],
[PARMETIS_PREFIX=$withval], [])
AC_ARG_WITH(
[vtk],
[AC_HELP_STRING([--with-vtk],
[VTK installation path [default=""]])],
[VTK_PREFIX=$withval], [])
# Determine a C/C++ compiler to use.
if test "x$ENABLE_PARALLEL" = "xyes"; then
if test "x$MPICC" != "x"; then
CC=$MPICC
fi
if test "x$MPICXX" != "x"; then
CXX=$MPICXX
fi
c_compilers="mpicc cc"
cxx_compilers="mpic++ CC"
else
c_compilers="pgcc pathcc icc gcc cc_r cc"
cxx_compilers="pgcc pathcc icc g++ cc_r c++"
fi
AC_PROG_CC($c_compilers)
AC_PROG_CXX($cxx_compilers)
CC=`which $CC`
CXX=`which $CXX`
AC_PROG_CC_C99
if test "x$ac_cv_prog_cc_c99" = "xno"; then
AC_MSG_ERROR([Cannot set C compiler to use C99 standard!])
exit 1
fi
###############################################################################
############### PATH SERACH FUNCTION - to be used later... ####################
@@ -85,45 +170,62 @@ PATH_Search() {
return
}
###############################################################################
# MISC SETTINGS INCLUDING C & C++ COMPILER SETTING
###############################################################################
############# MISC SETTINGS INCLUDING C & C++ COMPILER SETTING ################
###############################################################################
# Compute the canonical host-system type variable, host, and its three
# individual parts host_cpu, host_vendor, and host_os.
AC_CANONICAL_HOST
AC_PROG_MAKE_SET
CFLAGS="$CFLAGS -Wall"
CXXFLAGS="$CFLAGS -Wall"
FFLAGS="$FFLAGS -Wall"
# Determine a C/C++ compiler to use.
# If CC is not already set in the environment, check for gcc and cc, then
# for other C compilers.
# Set output variable CC to the name of the compiler found.
if test "x$USE_PARALLEL" = "xyes"; then
CCOMPILERS="mpicc cc"
CXXCOMPILERS="mpic++ mpicxx CC"
# debug enabled?
AC_MSG_CHECKING([if debug is enabled])
if test "X$ENABLE_DEBUG" = "Xyes"; then
AC_MSG_RESULT([yes])
CFLAGS="$CFLAGS -g3 -O0"
CXXFLAGS="$CFLAGS -g3 -O0"
FFLAGS="$FFLAGS -g3 -O0"
else
CCOMPILERS="pgcc pathcc icc gcc cc_r cc"
CXXCOMPILERS="pgCC pathCC icpc g++"
AC_MSG_RESULT([no])
CFLAGS="$CFLAGS -O3"
CXXFLAGS="$CFLAGS -O3"
FFLAGS="$FFLAGS -O3"
fi
AC_PROG_CC($CCOMPILERS)
# Only need C++ for some of the tools
#if test "x$USE_TOOLS" = "xyes"; then
AC_PROG_CXX($CXXCOMPILERS)
#fi
# Set output variable INSTALL to the path of a BSD-compatible install program,
# if one is found in the current PATH.
# Otherwise, set INSTALL to `dir/install-sh -c`
AC_PROG_INSTALL
AC_PROG_AWK
# Disable shared libraries by default: can be enabled with --enable-shared
LT_INIT([disable-shared])
AC_PROG_LIBTOOL
# Default prefix for bindir, etc... (eg >> ./build/bin)
AC_PREFIX_DEFAULT(`pwd`/build)
# Checks for header files.
AC_CHECK_HEADERS([fcntl.h limits.h stdint.h stdlib.h string.h sys/ioctl.h unistd.h])
# Checks for typedefs, structures, and compiler characteristics.
AC_HEADER_STDBOOL
AC_C_INLINE
AC_TYPE_INT16_T
AC_TYPE_INT32_T
AC_TYPE_INT64_T
AC_TYPE_SIZE_T
AC_TYPE_SSIZE_T
AC_TYPE_UINT16_T
AC_TYPE_UINT32_T
AC_TYPE_UINT64_T
AC_CHECK_TYPES([ptrdiff_t])
# Checks for library functions.
AC_FUNC_MALLOC
AC_FUNC_REALLOC
AC_CHECK_FUNCS([memmove memset pow strchr strdup strerror strstr])
# AC_DEFINE_UNQUOTED (variable, value, [description])
# Define the C preprocessor variable variable to value
# Use this macro instead of AC_DEFINE when variable or value is a shell variable.
@@ -135,226 +237,267 @@ AC_DEFINE_UNQUOTED(MY_UNAME, "$uname", "")
###############################################################################
######################## CONFIGURE LINE OPTIONS ###############################
###############################################################################
# PROCESS ARGUMENTS
AC_MSG_CHECKING([if debug is enabled])
if test "X$USE_DEBUG" = "Xyes"; then
AC_MSG_RESULT([yes])
CFLAGS="$CFLAGS -g"
CXXFLAGS="$CXXFLAGS -g"
FFLAGS="$FFLAGS -g"
# C enabled?
AC_MSG_CHECKING([if C interface enabled])
if test "X$ENABLE_C" = "Xyes"; then
AC_MSG_RESULT([yes])
else
AC_MSG_RESULT([no])
AC_MSG_RESULT([no])
fi
############################ fortran enabled ##################################
# fortran enabled?
AC_MSG_CHECKING([if fortran interface enabled])
if test "X$USE_FORTRAN" = "Xyes"; then
if test "X$ENABLE_FORTRAN" = "Xyes"; then
AC_MSG_RESULT([yes])
LIB_FORTRAN="libH5PartF.la"
BUILD_LIBS="$BUILD_LIBS libH5PartF"
BUILD_TESTS="$BUILD_TESTS testf"
if test "X$USE_PARALLEL" = "Xyes"; then
AC_PROG_FC(mpif90 mpif77 ftn)
AC_LANG_PUSH(Fortran)
FC=''
F77=''
F90=''
if test "X$ENABLE_PARALLEL" = "Xyes"; then
AC_PROG_FC(mpif90 mpif77)
else
AC_PROG_FC(pgf90 pathf90 ifort ftn xlf_r g95 g90 gfortran)
AC_PROG_FC(pgf90 ifort xlf_r pathf90 g95 g90 ftn gfortran)
fi
if test -z "$FC" ; then
AC_MSG_ERROR([Cannot find a Fortran compiler!])
exit 1
FC=`which $FC`
# Query Fortran symbol mangling. __AC_FC_NAME_MANGLING sets
# ac_cv_{f77,fc}_mangling. The value contains three fields, separated
# by commas:
#
# lower case / upper case:
# case translation of the Fortran symbols
# underscore / no underscore:
# whether the compiler appends "_" to symbol names
# extra underscore / no extra underscore:
# whether the compiler appends an extra "_" to symbol names already
# containing at least one underscore
__AC_FC_NAME_MANGLING
if test "X${ac_cv_fc_mangling}" == "Xlower case, no underscore, no extra underscore"; then
CPPFLAGS+=" -DFC_MANGLING_LOWERCASE_NO_UNDERSCORE"
elif test "X${ac_cv_fc_mangling}" == "Xlower case, underscore, no extra underscore"; then
CPPFLAGS+=" -DFC_MANGLING_LOWERCASE_SINGLE_UNDERSCORE"
elif test "X${ac_cv_fc_mangling}" == "Xlower case, underscore, extra underscore"; then
CPPFLAGS+=" -DFC_MANGLING_LOWERCASE_DOUBLE_UNDERSCORE"
elif test "X${ac_cv_fc_mangling}" == "Xupper case, no underscore, no extra underscore"; then
CPPFLAGS+=" -DFC_MANGLING_UPPERCASE_NO_UNDERSCORE"
elif test "X${ac_cv_fc_mangling}" == "Xupper case, underscore, no extra underscore"; then
CPPFLAGS+=" -DFC_MANGLING_UPPERCASE_SINGLE_UNDERSCORE"
elif test "X${ac_cv_fc_mangling}" == "Xupper case, underscore, extra underscore"; then
CPPFLAGS+=" -DFC_MANGLING_UPPERCASE_DOUBLE_UNDERSCORE"
fi
if test $FC = "g90"; then
FFLAGS="${FFLAGS} -fno-second-underscore"
fi
if test $FC = "g95"; then
FFLAGS="${FFLAGS} -fno-second-underscore"
fi
AC_MSG_CHECKING([symbol convention in object files])
`cd src && rm -f TestUnderscore.o TestUnderscoreC.o TestUnderscore`
`cd src && ${FC} ${FFLAGS} -c TestUnderscore.f`
`cd src && ${CC} ${CFLAGS} -c TestUnderscoreC.c`
`cd src && ${FC} ${FFLAGS} -o TestUnderscore TestUnderscore.o TestUnderscoreC.o`
if test -f src/TestUnderscore ; then
UNDERSCORE_H=Underscore.h
`cd src && ./TestUnderscore > Underscore.h`
AC_MSG_RESULT([ok])
else
AC_MSG_RESULT([nok])
AC_MSG_ERROR([Cannot determine the symbon convention for Fortran object files!])
exit 1
fi
AC_LANG_POP(Fortran)
else
AC_MSG_RESULT([no])
fi
# python enabled?
if test "X$ENABLE_PYTHON" = "Xyes"; then
# Disable shared libraries by default: can be enabled with --enable-shared
LT_INIT([disable-shared])
AC_PROG_LIBTOOL
AM_PATH_PYTHON([2.5])
AX_PKG_SWIG([1.3], [], [ AC_MSG_ERROR([SWIG is required to build..]) ])
#SWIG_ENABLE_CXX
#SWIG_PYTHON
PYTHON_PREFIX=`python-config --prefix`
PYTHON_EXEC_PREFIX=`python-config --exec-prefix`
# make sure numpy is available..
AC_MSG_CHECKING([for numpy support])
NUMPY_INCLUDE=`${PYTHON} -c 'import numpy; print numpy.get_include()'`
if test "X$?" = "X0" ; then
AC_MSG_RESULT([$NUMPY_INCLUDE])
else
AC_MSG_RESULT([no])
exit 1
fi
AC_SUBST([NUMPY_INCLUDE])
#check for parallel support
if test "X$ENABLE_PARALLEL" = "Xyes"; then
AC_MSG_CHECKING([for mpi4py support])
MPI4PY_INCLUDE=`${PYTHON} -c 'import mpi4py; print mpi4py.get_include()'`
if test "X$?" = "X0" ; then
AC_MSG_RESULT([$MPI4PY_INCLUDE])
else
AC_MSG_RESULT([no])
exit 1
fi
AC_SUBST([MPI4PY_INCLUDE])
fi
AC_MSG_RESULT([ok])
else
AC_MSG_CHECKING([if python interface is enabled])
AC_MSG_RESULT([no])
fi
######################## large indices enabled ###########################
AC_MSG_CHECKING([if large indices are enabled])
if test "X$USE_LARGE_INDICES" = "Xyes"; then
AC_MSG_RESULT([yes])
CFLAGS="${CFLAGS} -DUSE_LARGE_INDICES"
else
AC_MSG_RESULT([no])
fi
######################## parallel interface enabled ###########################
AC_MSG_CHECKING([if parallel interface enabled])
if test "X$USE_PARALLEL" = "Xyes"; then
if test "X$ENABLE_PARALLEL" = "Xyes"; then
AC_MSG_RESULT([yes])
CPPFLAGS="${CPPFLAGS} -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK"
CFLAGS="${CFLAGS} -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK"
CXXFLAGS="${CXXFLAGS} -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK"
FFLAGS="${FFLAGS} -DPARALLEL_IO"
if test "X$ENABLE_EXPERIMENTAL" = "Xyes"; then
CPPFLAGS="$CPPFLAGS -DWITH_PARALLEL_H5GRID"
AC_MSG_CHECKING([for ParMETIS])
if test "X$PARMETIS_PREFIX" != "X"; then
CPPFLAGS="$CPPFLAGS -I$PARMETIS_PREFIX/include"
LDFLAGS="$LDFLAGS -L$PARMETIS_PREFIX/lib"
fi
AC_MSG_CHECKING([if we can compile MPI code without setting flags])
AC_TRY_LINK([#include "mpi.h"], [
MPI_Comm comm;
int n;
MPI_Comm_size( comm, &n ); ],
[AC_MSG_RESULT([yes]); r='yes'], [AC_MSG_RESULT([no]); r='no'] )
if test "X$r" = "Xno"; then
AC_MSG_ERROR([MPI wrapper can't compile or link MPI program! Please set the INCLUDE and LIBS variables manually.])
exit 1
fi
LIBS="$LIBS -lparmetis -lmetis"
AC_TRY_LINK([#include <parmetis.h>], [
ParMETIS_V3_PartGeom (NULL, NULL, NULL, NULL, NULL);],
[AC_MSG_RESULT([yes]); r='yes'], [AC_MSG_RESULT([no]); r='no'] )
if test "X$r" = "Xno"; then
AC_MSG_ERROR([ParMETIS])
exit 1
fi
fi
else # --enable-parallel=no
AC_MSG_RESULT([no])
fi
######################## tools enabled ###########################
AC_MSG_CHECKING([whether tools are enabled])
if test "X$USE_TOOLS" = "Xyes"; then
AC_MSG_RESULT([yes])
BUILD_TOOLS="h5pAttrib h5pToGNUplot homdynToH5p"
# tools + parallel
if test "X$USE_PARALLEL" = "Xyes"; then
BUILD_TOOLS="${BUILD_TOOLS} H5PartBench H5BlockBench"
fi
else
AC_MSG_RESULT([no])
###############################################################################
# LIBRARY PATHS
if test -z "${HDF5_PREFIX}"; then
# alternatives to HDF5_PREFIX
if test -n "${HDF5_DIR}"; then
HDF5_PREFIX=${HDF5_DIR}
fi
fi
if test -n "${HDF5_PREFIX}"; then
CPPFLAGS="$CPPFLAGS -I$HDF5_PREFIX/include"
LDFLAGS="$LDFLAGS -L$HDF5_PREFIX/lib"
fi
AC_CHECK_LIB([z], [compress2])
AC_CHECK_LIB([hdf5], [H5open])
AS_IF([test "x$ac_cv_lib_hdf5_H5open" != xyes],
[AC_MSG_ERROR([Cannot compile and link a HDF5 program]);
exit 1])
###############################################################################
######################### PATH CHECKING & SETTING #############################
###############################################################################
AC_MSG_CHECKING([for HDF5 root ])
AC_MSG_CHECKING([for lustre API ])
AC_MSG_RESULT([])
if test -n "${HDF5PATH}" ; then
P=${HDF5PATH}
elif test -n "${HDF5ROOT}"; then
P=${HDF5ROOT}
elif test -n "${HDF5HOME}" ; then
P=${HDF5HOME}
elif test -n "${HDF5_DIR}" ; then
P=${HDF5_DIR}
if test -n "${LUSTREPATH}"; then
P=${LUSTREPATH}
elif test -n "${LUSTREROOT}" ; then
P=${LUSTREROOT}
elif test -n "${LUSTREHOME}" ; then
P=${LUSTREHOME}
elif test -n "${LUSTRE_DIR}" ; then
P=${LUSTRE_DIR}
else
P=''
P="$P /usr"
P="$P /usr/local"
P="$P /usr/local/hdf5"
P="$P /usr/local/packages/hdf5"
P="$P /apps/hdf5"
P="$P /opt/hdf5"
P="$P /usr/local/lustre"
P="$P /opt/lustre"
fi
PATH_Search HDF5ROOT "$P" include/hdf5.h
if test -z "$HDF5ROOT"; then
AC_MSG_ERROR([Cannot find an HDF5 library!])
exit 1
PATH_Search LUSTREROOT "$P" usr/include/lustre/liblustreapi.h
if test -z "$LUSTREROOT"; then
AC_MSG_WARN([Couldn't locate the lustre API... building without support for lustre striping!])
else
CFLAGS="$CFLAGS -DH5_USE_LUSTRE"
CPPFLAGS="$CPPFLAGS -I$LUSTREROOT/usr/include"
LDFLAGS="$LDFLAGS -L$LUSTREROOT/usr/lib"
LIBS="$LIBS -llustreapi"
fi
INCLUDES="$INCLUDES -I$HDF5ROOT/include"
LDFLAGS="$LDFLAGS -L$HDF5ROOT/lib"
LIBS="$LIBS -lhdf5"
AC_MSG_CHECKING([if we need to link to libsz ])
if test -n "$HDF5ROOT"; then
if test -f $HDF5ROOT/lib/libsz.a; then
AC_MSG_RESULT([yes])
LDFLAGS="$LDFLAGS -L$HDF5ROOT/lib"
LIBS="$LIBS -lsz"
else
AC_MSG_RESULT([no])
fi
fi
LIBS="$LIBS -lz -lm"
# Checks for header files.
AC_CHECK_HEADERS([fcntl.h stdlib.h string.h unistd.h])
# Checks for typedefs, structures, and compiler characteristics.
AC_HEADER_STDBOOL
AC_TYPE_INT64_T
AC_TYPE_SIZE_T
AC_TYPE_SSIZE_T
# Checks for library functions.
AC_FUNC_MALLOC
AC_CHECK_FUNCS([memset pow strchr strdup])
LIBS="$LIBS -lm"
###############################################################################
############## EXPORTING VARIABLES & CREATING OUTPUT FILES ####################
# TOOLS
AC_MSG_CHECKING([if we have to compile the VTK to H5hut grid converter])
if test "X$ENABLE_VTKCONVERTER" = "Xyes"; then
AC_MSG_RESULT([yes])
# :TODO: add test whether we can compile/link a prog with vtk
else
AC_MSG_RESULT([no])
fi
###############################################################################
# AC_SUBST (variable, [value])
# Create an output variable from a shell variable. Make AC_OUTPUT substitute
# the variable variable into output files (typically one or more `Makefile's).
# This means that AC_OUTPUT will replace instances of `@variable@' in input
# files with the value that the shell variable variable has when AC_OUTPUT is
# called. This value of variable should not contain literal newlines. If
# value is given, in addition assign it to variable.
# EXAMPLES
AC_MSG_CHECKING([if we have to compile the H5hut examples])
if test "X$ENABLE_EXAMPLES" = "Xyes"; then
AC_MSG_RESULT([yes])
else
AC_MSG_RESULT([no])
fi
###############################################################################
# EXPORTING VARIABLES & CREATING OUTPUT FILES
AM_CPPFLAGS=$CPPFLAGS
AM_LDFLAGS=$LDFLAGS
AC_SUBST(HDF5_PREFIX)
AC_SUBST(CFLAGS)
AC_SUBST(CXXFLAGS)
AC_SUBST(FFLAGS)
AC_SUBST(INCLUDES)
AC_SUBST(LDFLAGS)
AC_SUBST(LIBS)
AC_SUBST(UNDERSCORE_H)
AC_SUBST(LIB_FORTRAN)
AC_SUBST(BUILD_TESTS)
AC_SUBST(BUILD_TOOLS)
AC_SUBST(AM_CPPFLAGS)
AC_SUBST(AM_LDFLAGS)
# Make AC_OUTPUT create each `file' by copying an input file (by default `file.in'),
# substituting the output variable values.
AC_CONFIG_FILES([
Makefile
src/Makefile
doc/Makefile
src/h5core/Makefile
src/include/Makefile
src/include/h5core/Makefile
src/C/Makefile
src/Fortran/Makefile
src/Python/Makefile
test/Makefile
doc/Makefile
tools/Makefile
tools/h5hutcc
tools/vtk2h5grid/Makefile
examples/H5/Makefile
examples/H5Part/Makefile
examples/H5Block/Makefile
examples/H5Fed/Makefile
])
AC_OUTPUT
###############################################################################
########################## PRINTING SUMMARY ###################################
###############################################################################
# PRINTING SUMMARY
AC_MSG_RESULT([ ])
AC_MSG_RESULT([Summary:])
AC_MSG_RESULT([ ])
AC_MSG_RESULT([Host OS: $host_os])
AC_MSG_RESULT([Host CPU: $host_cpu])
AC_MSG_RESULT([Host vendor: $host_vendor])
AC_MSG_RESULT([Build libraries: $BUILD_LIBS])
AC_MSG_RESULT([Build test programs: $BUILD_TESTS])
AC_MSG_RESULT([Build tools: $BUILD_TOOLS])
AC_MSG_RESULT([CC = $CC])
AC_MSG_RESULT([CXX = $CXX])
AC_MSG_RESULT([FC = $FC])
AC_MSG_RESULT([CFLAGS = $CFLAGS])
AC_MSG_RESULT([CXXFLAGS = $CXXFLAGS])
AC_MSG_RESULT([FFLAGS = $FFLAGS])
AC_MSG_RESULT([INCLUDES = $INCLUDES])
AC_MSG_RESULT([LDFLAGS = $LDFLAGS])
AC_MSG_RESULT([AM_CPPFLAGS = $AM_CPPFLAGS])
AC_MSG_RESULT([AM_LDFLAGS = $AM_LDFLAGS])
AC_MSG_RESULT([LIBS = $LIBS])
AC_MSG_RESULT([HDF5ROOT = $HDF5ROOT])
AC_MSG_RESULT([HDF5_PREFIX = $HDF5_PREFIX])
AC_MSG_RESULT([LUSTREROOT = $LUSTREROOT])
if test "x$ENABLE_PYTHON" = "xyes"; then
AC_MSG_RESULT([PYTHON = $PYTHON])
AC_MSG_RESULT([SWIG = $SWIG])
AC_MSG_RESULT([NUMPY_INCLUDE = $NUMPY_INCLUDE])
if test "x$ENABLE_PARALLEL" = "xyes"; then
AC_MSG_RESULT([MPI4PY_INCLUDE = $MPI4PY_INCLUDE])
fi
fi
AC_MSG_RESULT([ ])
depcomp
-529
View File
@@ -1,529 +0,0 @@
#! /bin/sh
# depcomp - compile a program generating dependencies as side-effects
scriptversion=2005-02-09.22
# Copyright (C) 1999, 2000, 2003, 2004, 2005 Free Software Foundation, Inc.
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2, or (at your option)
# any later version.
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
# 02111-1307, USA.
# As a special exception to the GNU General Public License, if you
# distribute this file as part of a program that contains a
# configuration script generated by Autoconf, you may include it under
# the same distribution terms that you use for the rest of that program.
# Originally written by Alexandre Oliva <oliva@dcc.unicamp.br>.
case $1 in
'')
echo "$0: No command. Try \`$0 --help' for more information." 1>&2
exit 1;
;;
-h | --h*)
cat <<\EOF
Usage: depcomp [--help] [--version] PROGRAM [ARGS]
Run PROGRAMS ARGS to compile a file, generating dependencies
as side-effects.
Environment variables:
depmode Dependency tracking mode.
source Source file read by `PROGRAMS ARGS'.
object Object file output by `PROGRAMS ARGS'.
DEPDIR directory where to store dependencies.
depfile Dependency file to output.
tmpdepfile Temporary file to use when outputing dependencies.
libtool Whether libtool is used (yes/no).
Report bugs to <bug-automake@gnu.org>.
EOF
exit $?
;;
-v | --v*)
echo "depcomp $scriptversion"
exit $?
;;
esac
if test -z "$depmode" || test -z "$source" || test -z "$object"; then
echo "depcomp: Variables source, object and depmode must be set" 1>&2
exit 1
fi
# Dependencies for sub/bar.o or sub/bar.obj go into sub/.deps/bar.Po.
depfile=${depfile-`echo "$object" |
sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`}
tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`}
rm -f "$tmpdepfile"
# Some modes work just like other modes, but use different flags. We
# parameterize here, but still list the modes in the big case below,
# to make depend.m4 easier to write. Note that we *cannot* use a case
# here, because this file can only contain one case statement.
if test "$depmode" = hp; then
# HP compiler uses -M and no extra arg.
gccflag=-M
depmode=gcc
fi
if test "$depmode" = dashXmstdout; then
# This is just like dashmstdout with a different argument.
dashmflag=-xM
depmode=dashmstdout
fi
case "$depmode" in
gcc3)
## gcc 3 implements dependency tracking that does exactly what
## we want. Yay! Note: for some reason libtool 1.4 doesn't like
## it if -MD -MP comes after the -MF stuff. Hmm.
"$@" -MT "$object" -MD -MP -MF "$tmpdepfile"
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
mv "$tmpdepfile" "$depfile"
;;
gcc)
## There are various ways to get dependency output from gcc. Here's
## why we pick this rather obscure method:
## - Don't want to use -MD because we'd like the dependencies to end
## up in a subdir. Having to rename by hand is ugly.
## (We might end up doing this anyway to support other compilers.)
## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like
## -MM, not -M (despite what the docs say).
## - Using -M directly means running the compiler twice (even worse
## than renaming).
if test -z "$gccflag"; then
gccflag=-MD,
fi
"$@" -Wp,"$gccflag$tmpdepfile"
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
rm -f "$depfile"
echo "$object : \\" > "$depfile"
alpha=ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz
## The second -e expression handles DOS-style file names with drive letters.
sed -e 's/^[^:]*: / /' \
-e 's/^['$alpha']:\/[^:]*: / /' < "$tmpdepfile" >> "$depfile"
## This next piece of magic avoids the `deleted header file' problem.
## The problem is that when a header file which appears in a .P file
## is deleted, the dependency causes make to die (because there is
## typically no way to rebuild the header). We avoid this by adding
## dummy dependencies for each header file. Too bad gcc doesn't do
## this for us directly.
tr ' ' '
' < "$tmpdepfile" |
## Some versions of gcc put a space before the `:'. On the theory
## that the space means something, we add a space to the output as
## well.
## Some versions of the HPUX 10.20 sed can't process this invocation
## correctly. Breaking it into two sed invocations is a workaround.
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
hp)
# This case exists only to let depend.m4 do its work. It works by
# looking at the text of this script. This case will never be run,
# since it is checked for above.
exit 1
;;
sgi)
if test "$libtool" = yes; then
"$@" "-Wp,-MDupdate,$tmpdepfile"
else
"$@" -MDupdate "$tmpdepfile"
fi
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
rm -f "$depfile"
if test -f "$tmpdepfile"; then # yes, the sourcefile depend on other files
echo "$object : \\" > "$depfile"
# Clip off the initial element (the dependent). Don't try to be
# clever and replace this with sed code, as IRIX sed won't handle
# lines with more than a fixed number of characters (4096 in
# IRIX 6.2 sed, 8192 in IRIX 6.5). We also remove comment lines;
# the IRIX cc adds comments like `#:fec' to the end of the
# dependency line.
tr ' ' '
' < "$tmpdepfile" \
| sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' | \
tr '
' ' ' >> $depfile
echo >> $depfile
# The second pass generates a dummy entry for each header file.
tr ' ' '
' < "$tmpdepfile" \
| sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' -e 's/$/:/' \
>> $depfile
else
# The sourcefile does not contain any dependencies, so just
# store a dummy comment line, to avoid errors with the Makefile
# "include basename.Plo" scheme.
echo "#dummy" > "$depfile"
fi
rm -f "$tmpdepfile"
;;
aix)
# The C for AIX Compiler uses -M and outputs the dependencies
# in a .u file. In older versions, this file always lives in the
# current directory. Also, the AIX compiler puts `$object:' at the
# start of each line; $object doesn't have directory information.
# Version 6 uses the directory in both cases.
stripped=`echo "$object" | sed 's/\(.*\)\..*$/\1/'`
tmpdepfile="$stripped.u"
if test "$libtool" = yes; then
"$@" -Wc,-M
else
"$@" -M
fi
stat=$?
if test -f "$tmpdepfile"; then :
else
stripped=`echo "$stripped" | sed 's,^.*/,,'`
tmpdepfile="$stripped.u"
fi
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
if test -f "$tmpdepfile"; then
outname="$stripped.o"
# Each line is of the form `foo.o: dependent.h'.
# Do two passes, one to just change these to
# `$object: dependent.h' and one to simply `dependent.h:'.
sed -e "s,^$outname:,$object :," < "$tmpdepfile" > "$depfile"
sed -e "s,^$outname: \(.*\)$,\1:," < "$tmpdepfile" >> "$depfile"
else
# The sourcefile does not contain any dependencies, so just
# store a dummy comment line, to avoid errors with the Makefile
# "include basename.Plo" scheme.
echo "#dummy" > "$depfile"
fi
rm -f "$tmpdepfile"
;;
icc)
# Intel's C compiler understands `-MD -MF file'. However on
# icc -MD -MF foo.d -c -o sub/foo.o sub/foo.c
# ICC 7.0 will fill foo.d with something like
# foo.o: sub/foo.c
# foo.o: sub/foo.h
# which is wrong. We want:
# sub/foo.o: sub/foo.c
# sub/foo.o: sub/foo.h
# sub/foo.c:
# sub/foo.h:
# ICC 7.1 will output
# foo.o: sub/foo.c sub/foo.h
# and will wrap long lines using \ :
# foo.o: sub/foo.c ... \
# sub/foo.h ... \
# ...
"$@" -MD -MF "$tmpdepfile"
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
rm -f "$depfile"
# Each line is of the form `foo.o: dependent.h',
# or `foo.o: dep1.h dep2.h \', or ` dep3.h dep4.h \'.
# Do two passes, one to just change these to
# `$object: dependent.h' and one to simply `dependent.h:'.
sed "s,^[^:]*:,$object :," < "$tmpdepfile" > "$depfile"
# Some versions of the HPUX 10.20 sed can't process this invocation
# correctly. Breaking it into two sed invocations is a workaround.
sed 's,^[^:]*: \(.*\)$,\1,;s/^\\$//;/^$/d;/:$/d' < "$tmpdepfile" |
sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
tru64)
# The Tru64 compiler uses -MD to generate dependencies as a side
# effect. `cc -MD -o foo.o ...' puts the dependencies into `foo.o.d'.
# At least on Alpha/Redhat 6.1, Compaq CCC V6.2-504 seems to put
# dependencies in `foo.d' instead, so we check for that too.
# Subdirectories are respected.
dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
test "x$dir" = "x$object" && dir=
base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
if test "$libtool" = yes; then
# With Tru64 cc, shared objects can also be used to make a
# static library. This mecanism is used in libtool 1.4 series to
# handle both shared and static libraries in a single compilation.
# With libtool 1.4, dependencies were output in $dir.libs/$base.lo.d.
#
# With libtool 1.5 this exception was removed, and libtool now
# generates 2 separate objects for the 2 libraries. These two
# compilations output dependencies in in $dir.libs/$base.o.d and
# in $dir$base.o.d. We have to check for both files, because
# one of the two compilations can be disabled. We should prefer
# $dir$base.o.d over $dir.libs/$base.o.d because the latter is
# automatically cleaned when .libs/ is deleted, while ignoring
# the former would cause a distcleancheck panic.
tmpdepfile1=$dir.libs/$base.lo.d # libtool 1.4
tmpdepfile2=$dir$base.o.d # libtool 1.5
tmpdepfile3=$dir.libs/$base.o.d # libtool 1.5
tmpdepfile4=$dir.libs/$base.d # Compaq CCC V6.2-504
"$@" -Wc,-MD
else
tmpdepfile1=$dir$base.o.d
tmpdepfile2=$dir$base.d
tmpdepfile3=$dir$base.d
tmpdepfile4=$dir$base.d
"$@" -MD
fi
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
exit $stat
fi
for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
do
test -f "$tmpdepfile" && break
done
if test -f "$tmpdepfile"; then
sed -e "s,^.*\.[a-z]*:,$object:," < "$tmpdepfile" > "$depfile"
# That's a tab and a space in the [].
sed -e 's,^.*\.[a-z]*:[ ]*,,' -e 's,$,:,' < "$tmpdepfile" >> "$depfile"
else
echo "#dummy" > "$depfile"
fi
rm -f "$tmpdepfile"
;;
#nosideeffect)
# This comment above is used by automake to tell side-effect
# dependency tracking mechanisms from slower ones.
dashmstdout)
# Important note: in order to support this mode, a compiler *must*
# always write the preprocessed file to stdout, regardless of -o.
"$@" || exit $?
# Remove the call to Libtool.
if test "$libtool" = yes; then
while test $1 != '--mode=compile'; do
shift
done
shift
fi
# Remove `-o $object'.
IFS=" "
for arg
do
case $arg in
-o)
shift
;;
$object)
shift
;;
*)
set fnord "$@" "$arg"
shift # fnord
shift # $arg
;;
esac
done
test -z "$dashmflag" && dashmflag=-M
# Require at least two characters before searching for `:'
# in the target name. This is to cope with DOS-style filenames:
# a dependency such as `c:/foo/bar' could be seen as target `c' otherwise.
"$@" $dashmflag |
sed 's:^[ ]*[^: ][^:][^:]*\:[ ]*:'"$object"'\: :' > "$tmpdepfile"
rm -f "$depfile"
cat < "$tmpdepfile" > "$depfile"
tr ' ' '
' < "$tmpdepfile" | \
## Some versions of the HPUX 10.20 sed can't process this invocation
## correctly. Breaking it into two sed invocations is a workaround.
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
dashXmstdout)
# This case only exists to satisfy depend.m4. It is never actually
# run, as this mode is specially recognized in the preamble.
exit 1
;;
makedepend)
"$@" || exit $?
# Remove any Libtool call
if test "$libtool" = yes; then
while test $1 != '--mode=compile'; do
shift
done
shift
fi
# X makedepend
shift
cleared=no
for arg in "$@"; do
case $cleared in
no)
set ""; shift
cleared=yes ;;
esac
case "$arg" in
-D*|-I*)
set fnord "$@" "$arg"; shift ;;
# Strip any option that makedepend may not understand. Remove
# the object too, otherwise makedepend will parse it as a source file.
-*|$object)
;;
*)
set fnord "$@" "$arg"; shift ;;
esac
done
obj_suffix="`echo $object | sed 's/^.*\././'`"
touch "$tmpdepfile"
${MAKEDEPEND-makedepend} -o"$obj_suffix" -f"$tmpdepfile" "$@"
rm -f "$depfile"
cat < "$tmpdepfile" > "$depfile"
sed '1,2d' "$tmpdepfile" | tr ' ' '
' | \
## Some versions of the HPUX 10.20 sed can't process this invocation
## correctly. Breaking it into two sed invocations is a workaround.
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile" "$tmpdepfile".bak
;;
cpp)
# Important note: in order to support this mode, a compiler *must*
# always write the preprocessed file to stdout.
"$@" || exit $?
# Remove the call to Libtool.
if test "$libtool" = yes; then
while test $1 != '--mode=compile'; do
shift
done
shift
fi
# Remove `-o $object'.
IFS=" "
for arg
do
case $arg in
-o)
shift
;;
$object)
shift
;;
*)
set fnord "$@" "$arg"
shift # fnord
shift # $arg
;;
esac
done
"$@" -E |
sed -n '/^# [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' |
sed '$ s: \\$::' > "$tmpdepfile"
rm -f "$depfile"
echo "$object : \\" > "$depfile"
cat < "$tmpdepfile" >> "$depfile"
sed < "$tmpdepfile" '/^$/d;s/^ //;s/ \\$//;s/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
msvisualcpp)
# Important note: in order to support this mode, a compiler *must*
# always write the preprocessed file to stdout, regardless of -o,
# because we must use -o when running libtool.
"$@" || exit $?
IFS=" "
for arg
do
case "$arg" in
"-Gm"|"/Gm"|"-Gi"|"/Gi"|"-ZI"|"/ZI")
set fnord "$@"
shift
shift
;;
*)
set fnord "$@" "$arg"
shift
shift
;;
esac
done
"$@" -E |
sed -n '/^#line [0-9][0-9]* "\([^"]*\)"/ s::echo "`cygpath -u \\"\1\\"`":p' | sort | uniq > "$tmpdepfile"
rm -f "$depfile"
echo "$object : \\" > "$depfile"
. "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s:: \1 \\:p' >> "$depfile"
echo " " >> "$depfile"
. "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s::\1\::p' >> "$depfile"
rm -f "$tmpdepfile"
;;
none)
exec "$@"
;;
*)
echo "Unknown depmode $depmode" 1>&2
exit 1
;;
esac
exit 0
# Local Variables:
# mode: shell-script
# sh-indentation: 2
# eval: (add-hook 'write-file-hooks 'time-stamp)
# time-stamp-start: "scriptversion="
# time-stamp-format: "%:y-%02m-%02d.%02H"
# time-stamp-end: "$"
# End:
doc/Doxyfile
+2305 -151
View File
File diff suppressed because it is too large Load Diff
doc/Examples/meshexample.dxf
+47962
View File
File diff suppressed because it is too large Load Diff
doc/Examples/meshexample.txt
+77
View File
@@ -0,0 +1,77 @@
NumLevels: 2
NumVerticesOnLevel: 11 20 29
Vertices:
1 0.0 0.0
2 60.0 -70.0
3 90.0 -10.0
4 140.0 -70.0
5 180.0 -10.0
6 240.0 -60.0
7 220.0 60.0
8 140.0 90.0
9 200.0 120.0
10 130.0 150.0
11 50.0 80.0
12 115.0 40.0
13 95.0 85.0
14 70.0 35.0
15 160.0 -40.0
16 135.0 -10.0
17 115.0 -40.0
18 200.0 25.0
19 180.0 75.0
20 160.0 40.0
21 125.0 15.0
22 112.5 -10.0
23 102.5 15.0
24 147.5 15.0
25 137.5 40.0
26 150.0 65.0
27 127.5 65.0
28 117.5 87.5
29 105.0 62.5
NumElemsOnLevel: 12 24 36
NumElems: 12 28 44
Elements:
ID PID CID VertexIDs Adj Translation Tbl (dim num lvls - 1)
1 -1 -1 1 2 3 2 11 -1 1
2 -1 -1 2 3 4 3 -1 1 2
3 -1 12 3 4 5 4 12 2 -1
4 -1 -1 4 5 6 5 -1 3 3
5 -1 -1 5 7 6 -1 4 6 4
6 -1 17 8 5 7 5 7 12 -1
7 -1 -1 8 9 7 -1 6 8 5
8 -1 -1 10 8 9 7 -1 9 6
9 -1 -1 11 10 8 8 10 -1 7
10 -1 25 11 3 8 12 9 11 -1
11 -1 -1 1 11 3 10 1 -1 8
12 -1 21 3 8 5 6 3 10 -1
13 3 -1 3 14 13 16 21 2 9
14 3 -1 14 4 12 4 16 2 10
15 3 -1 13 12 5 4 23 16 11
16 3 -1 14 13 12 15 14 13 12
17 6 -1 8 17 16 20 5 22 13
18 6 -1 17 5 15 5 20 23 14
19 6 -1 16 15 7 5 7 20 15
20 6 -1 17 16 15 19 18 17 16
21 12 -1 3 18 13 24 13 26 17
22 12 -1 18 8 17 17 24 27 18
23 12 -1 13 17 5 18 15 24 19
24 12 -1 18 13 17 23 22 21 20
25 10 -1 11 20 19 28 9 11 21
26 10 -1 20 3 18 21 28 11 22
27 10 -1 19 18 8 22 9 28 23
28 10 -1 20 3 18 27 26 25 24
3,0 3,1 4,2 2,3 16,4
1 2 -1 3 4
1 2 3
1 3 6
2 11 1 13 14
doc/Examples/simple_tet.vtk
+107
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@@ -0,0 +1,107 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 18 90
4 0 3 2 1
4 0 4 3 1
4 0 5 6 7
4 5 3 8 9
4 6 8 2 10
4 7 9 10 1
4 5 6 7 9
4 5 6 8 9
4 6 7 9 10
4 6 8 9 10
4 0 11 12 13
4 11 5 14 15
4 12 14 6 16
4 13 15 16 7
4 11 12 13 15
4 11 12 14 15
4 12 13 15 16
4 12 14 15 16
CELL_TYPES 18
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 18
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
doc/Examples/simple_tet_level0.vtk
+59
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@@ -0,0 +1,59 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 2 10
4 0 3 2 1
4 0 4 3 1
CELL_TYPES 2
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 2
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
0
1
doc/Examples/simple_tet_level1.vtk
+80
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@@ -0,0 +1,80 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 9 45
4 0 4 3 1
4 0 5 6 7
4 5 3 8 9
4 6 8 2 10
4 7 9 10 1
4 5 6 7 9
4 5 6 8 9
4 6 7 9 10
4 6 8 9 10
CELL_TYPES 9
10
10
10
10
10
10
10
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 9
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
doc/Examples/simple_tet_level2.vtk
+101
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@@ -0,0 +1,101 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 16 80
4 0 4 3 1
4 5 3 8 9
4 6 8 2 10
4 7 9 10 1
4 5 6 7 9
4 5 6 8 9
4 6 7 9 10
4 6 8 9 10
4 0 11 12 13
4 11 5 14 15
4 12 14 6 16
4 13 15 16 7
4 11 12 13 15
4 11 12 14 15
4 12 13 15 16
4 12 14 15 16
CELL_TYPES 16
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 16
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
1
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
doc/Examples/trimesh_dgraph_level0.metis
+13
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@@ -0,0 +1,13 @@
12 14
2 11
1 3
2 4 12
3 5
4 6
5 7 12
6 8
7 9
8 10
9 11 12
1 10
3 6 10
doc/Examples/trimesh_dgraph_level0.metis.part.2
+12
View File
@@ -0,0 +1,12 @@
0
1
1
1
1
1
0
0
0
0
0
1
doc/Examples/trimesh_dgraph_level0.metis.part.3
+12
View File
@@ -0,0 +1,12 @@
1
1
2
2
2
0
0
0
0
1
1
2
doc/Examples/trimesh_dnode_level1.metis
+49
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@@ -0,0 +1,49 @@
24 35
%1
2 8
%2
1 9 10
%3
4 10 11
%4
3 14 15
%5
6 13 15
%6
5 7
%7
6 21 23
%8
1 21 22
%9
2 12 17
%10
2 3 12
%11
3 12 19
%12
9 10 11
%13
5 16 18
%14
4 16 19
%15
4 5 16
%16
13 14 15
%17
9 20 22
%18
13 20 23
%19
11 14 20
%20
17 18 19
%21
7 8 24
%22
8 17 24
%23
7 18 24
%24
21 22 23
doc/Examples/trimesh_dnode_level1.metis.part.2
+24
View File
@@ -0,0 +1,24 @@
1
1
0
0
0
0
1
1
1
1
0
1
0
0
0
0
1
0
0
0
1
1
1
1
doc/Examples/trimesh_level0.metis
+13
View File
@@ -0,0 +1,13 @@
12 1
1 2 3
2 3 4
3 4 6
4 5 6
5 6 7
6 7 8
7 8 11
8 10 11
8 9 10
3 8 9
1 3 9
3 6 8
doc/Examples/trimesh_level0.metis.epart.2
+12
View File
@@ -0,0 +1,12 @@
1
1
1
1
0
0
0
0
0
0
1
1
doc/Examples/trimesh_level0.metis.ngraph
+12
View File
@@ -0,0 +1,12 @@
11 22
2 3 9
1 3 4
1 2 4 6 8 9
2 3 6 5
4 6 7
3 4 5 7 8
5 6 8 11
6 7 11 10 9 3
8 10 3 1
8 11 9
7 8 10
doc/Examples/trimesh_level0.metis.npart.2
+11
View File
@@ -0,0 +1,11 @@
1
1
1
1
1
0
0
0
0
0
0
doc/Examples/trimesh_level1.metis
+41
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@@ -0,0 +1,41 @@
20 43
%1
2 3 11
%2
1 3 4
%3
1 2 14 13 18 20
%4
2 14 12 6
%5
12 6 15 17 13
%6
4 5 7
%7
6 15 16 9
%8
9 10 19 18 17 16
%9
7 8 10
%10
8 9 11
%11
1 20 19 10
%12
4 14 13 5
%13
3 14 12 5 17 18
%14
3 13 12 4
%15
5 17 17 7
%16
7 8 17 15
%17
5 15 16 8 18 13
%18
3 13 17 8 19 20
%19
8 11 20 18
%20
3 18 19 11
doc/Examples/trimesh_level1.metis.part.2
+20
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@@ -0,0 +1,20 @@
1
1
1
0
0
0
0
1
1
1
1
0
0
0
0
0
0
1
1
1
doc/H5.dox
+171
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@@ -0,0 +1,171 @@
/*!
\mainpage H5hut: A High-Performance I/O Library for Particle-based Simulations
Particle-based simulations running on large high-performance computing systems
over many time steps can generate an enormous amount of particle- and
field-based data for post-processing and analysis. Achieving high-performance
I/O for this data, effectively managing it on disk, and interfacing it with
analysis and visualization tools can be challenging, especially for domain
scientists who do not have I/O and data management expertise. We present the
H5hut library, an implementation of several data models for particle-based
simulations that encapsulates the complexity of HDF5 and is simple to use, yet
does not compromise performance.
Developers:
<UL>
<LI> Andreas Adelmann (PSI) </LI>
<LI> Achim Gsell (PSI) </LI>
<LI> Mark Howison (NERSC/LBNL) </LI>
<LI> Prabhat (NERSC/LBNL) </LI>
<LI> Wes Bethel (NERSC/LBNL) </LI>
</UL>
Previous developers:
<UL>
<LI> Benedikt Oswald (PSI) </LI>
<LI> Cristina Siegerist (NERSC/LBNL)</LI>
<LI> John Shalf (NERSC/LBNL)</LI>
</UL>
For more information, please contact the
<a href="mailto:h5part@lists.psi.ch">h5part</a> mailing list.
\defgroup c_api C API
@{
\note The C API is implemented with '\c static \c inline' functions to minimize overhead.
\defgroup h5_c_api H5
@{
\defgroup h5_file File interface
In this section we document the interface for accessing H5hut files.
\defgroup h5_model Setting up the data model
The fundamental data model of H5hut is pretty simple. There
are (time-)steps to group data, that's it. In this section we
document the interface to these (time-)steps.
\defgroup h5_file_attribs File attributes interface
File attributes are small datasets that can be used to
describe specific properties of a file. The H5hut API provides
functions to attach (write), read and inquire file attributes.
\defgroup h5_step_attribs Step attributes interface
Step attributes are similar to file attributes but are
attached to (time-)steps. They can be used to describe
specific properties of a specific step. The H5hut API provides
functions to attach (write), read and inquire step attributes.
\defgroup h5_attach Attaching files
Sometimes it is required (or at least useful) to attach
additional information to H5hut files. H5hut provides
functions to attach other files to H5hut files. The attached
files can be of any type.
\defgroup h5_log Controlling verbosity level
Controlling the verbosity level of H5hut. By default only
error messages are printed. For debugging it might be helpful
to increase the verbosity level.
\defgroup h5_debug Controlling debug output
Debug output mainly intended for developers.
\defgroup h5_error Error handling interface
H5hut comes with two error handler. The default error handler
prints an error message (which can be suppressed by setting
the verbosity level to \c 0), sets an internal error number
and returns to the calling program with the value \c
H5_FAILURE. It is up to the programmer to handle the error
properly. In certain use-cases it make sense just to abort the
program, so no additional error handling is needed. H5hut
provides an abort error-handler for this use-cases-
@}
\defgroup h5part_c_api H5Part
@{
\defgroup h5part_model Setting up the data model
The H5Part data model interface provides functions to set and
inquire (per core) views on datasets.
\defgroup h5part_io Dataset interface
The dataset interface provides functions to read and write
datasets. The following data types are supported:
- 64-bit floating point numbers (\c h5_float64_t)
- 32-bit floating point numbers (\c h5_float32_t)
- 64-bit integers (\c h5_int64_t)
- 32-bit integers (\c h5_int32_t)
\note Before you can write or read a dataset, you have to
define a "view" on the dataset for each core.
@}
\defgroup h5block_c_api H5Block
@{
\defgroup h5block_model Setting up the data model
The H5Block data model interface provides functions to set and
inquire (per core) views on fields.
\defgroup h5block_io Interface to block structured data
H5Block provides functions to store and retrieve
- 3-dimensional fields with scalar values
- 3-dimensional fields with 3-dimensional vectors as values
The following datatypes are supported:
- 64-bit floating point numbers (\c h5_float64_t)
- 32-bit floating point numbers (\c h5_float32_t)
- 64-bit integers (\c h5_int64_t)
- 32-bit integers (\c h5_int32_t)
\defgroup h5block_attrib Attaching attributes to field data
Field attributes are small datasets that can be used to
describe specific properties of a field like origin, spacing
or coordinates. The H5hut API provides functions to attach
(write), read and inquire file attributes.
@}
@}
*/
/*!
\defgroup f90_api Fortran90 API
@{
\defgroup h5_f90_api H5
@{
\defgroup h5_file_f file interface
\defgroup h5_model_f setting up the data model
\defgroup h5_file_attribs_f reading and writing file attributes
\defgroup h5_step_attribs_f reading and writing step attributes
\defgroup h5_log_f control verbosity level
\defgroup h5_debug_f control debug output
\defgroup h5_error_f error handling interface
@}
\defgroup h5part_f90_api H5Part
@{
\defgroup h5part_model_f setting up the data model
\defgroup h5part_io_f reading and writing datasets
@}
\defgroup h5block_f90_api H5Block
@{
\defgroup h5block_model_f setting up the data model
\defgroup h5block_io_f reading and writing datasets
\defgroup h5block_attrib_f reading and writing attributes
@}
@}
*/
doc/Makefile.am
+13 -1
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@@ -1,2 +1,14 @@
EXTRA_DIST = \
Doxyfile doxyfooter
Doxyfile \
H5.dox
all:
doc:
doxydoc:
doxygen
clean-local:
$(RM) -r ReferencePages TWiki
$(RM) *~
doc/TracFooter.html
+2
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doc/TracHeader.html
+4
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@@ -0,0 +1,4 @@
<style type="text/css">
h1 { text-align: center; }
</style>
doc/doxyheader
+6
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@@ -0,0 +1,6 @@
<HTML>
<HEAD>
<TITLE>H5/H5Part/H5Block/H5Fed API</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
doc/html2twiki
Executable
+36
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#!/bin/bash
shopt -s nullglob
function html2twiki() {
declare -rx infile=$1
declare -rx outdir=$2
declare -rx fname=$( sed -n 's/.* member="\([a-zA-Z0-9_.]*\)::\([_a-zA-Z0-9]*\)" .*/\2/p' "${infile}" )
declare -rx outfile="${outdir}/${fname}.txt"
grep -q " member=" "${infile}" || return 0
sed '/Generated by/,/anchor/d' "${infile}" > "${outfile}"
}
mkdir -p TWiki/h5_core
mkdir -p TWiki/H5
mkdir -p TWiki/H5Part
mkdir -p TWiki/H5Block
mkdir -p TWiki/H5Fed
for f in ReferencePages/group__h5__core_*.html; do
html2twiki $f TWiki/h5_core
done
for f in ReferencePages/group__h5__c__api_*.html; do
html2twiki $f TWiki/H5
done
for f in ReferencePages/group__h5part__c__api_*.html; do
html2twiki $f TWiki/H5Part
done
for f in ReferencePages/group__h5block__c__api_*.html; do
html2twiki $f TWiki/H5Block
done
for f in ReferencePages/group__h5fed__c__api_*.html; do
html2twiki $f TWiki/H5Fed
done
doc/meshexample.dxf
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doc/postprocess.py
Executable
+39
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#!/usr/bin/env python
from lxml import etree
from lxml.html import builder as E
import os
import re
tree = etree.parse('tagfile')
tags = tree.xpath ('//member[@kind="function"]')
tags_per_files = {}
for tag in tags:
name = tag.find("name").text
anchor = tag.find("anchor").text
anchorfile = tag.find("anchorfile").text
if anchorfile in tags_per_files:
tags_per_files[anchorfile].append([name, anchor])
else:
tags_per_files[anchorfile] = [[name, anchor]]
prefix = None
for line in open("Doxyfile", "r"):
if re.search ("^OUTPUT_DIRECTORY", line):
prefix = line.split("=")[-1].strip()
if not prefix:
prefix = "."
parser = etree.HTMLParser()
for filename,anchors in tags_per_files.items():
print "Processing file: %s/%s" % (prefix, filename)
tree = etree.parse ("%s/%s" % (prefix, filename), parser)
for name,id in anchors:
anchor = tree.xpath ('//a[@id="%s"]' % id)
el = E.A(id="%s" % name)
anchor[0].addnext (el)
f = open ("%s/%s" % (prefix, filename), "w")
f.write (etree.tostring (tree))
doc/tetrahedron_refinements/1-edge/edge_01_refined/01.png
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doc/tetrahedron_refinements/1-edge/edge_01_refined/01.txt
+10
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TET no. 0:
0.5, 0.5, 0.0
0.0, 0.0, 1.0
0.0, 0.0, 0.0
0.0, 1.0, 0.0
TET no. 1:
0.5, 0.5, 0.0
0.0, 0.0, 0.0
0.0, 0.0, 1.0
1.0, 0.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_01_refined/01.vtk
+25
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.5 0.5 0.0
0.0 0.0 1.0
0.0 0.0 0.0
0.0 1.0 0.0
1.0 0.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_01_refined/01_smal.png
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doc/tetrahedron_refinements/1-edge/edge_12_refined/12.txt
+10
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TET no. 0:
0.0, 0.5, 0.5
0.0, 0.0, 0.0
1.0, 0.0, 0.0
0.0, 1.0, 0.0
TET no. 1:
0.0, 0.5, 0.5
1.0, 0.0, 0.0
0.0, 0.0, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/1-edge/edge_12_refined/12.vtk
+25
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@@ -0,0 +1,25 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.0 0.5 0.5
0.0 0.0 0.0
1.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_12_refined/12_small.png
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doc/tetrahedron_refinements/1-edge/edge_20_refined/20.txt
+10
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TET no. 0:
0.5, 0.0, 0.5
0.0, 0.0, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 1.0
TET no. 1:
0.5, 0.0, 0.5
0.0, 1.0, 0.0
0.0, 0.0, 0.0
1.0, 0.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_20_refined/20.vtk
+25
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@@ -0,0 +1,25 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.5 0.0 0.5
0.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
1.0 0.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_20_refined/20_small.png
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doc/tetrahedron_refinements/1-edge/edge_23_refined/23.txt
+10
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TET no. 0:
0.0, 0.0, 0.5
1.0, 0.0, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 0.0
TET no. 1:
0.0, 0.0, 0.5
0.0, 1.0, 0.0
1.0, 0.0, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/1-edge/edge_23_refined/23.vtk
+25
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@@ -0,0 +1,25 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.0 0.0 0.5
1.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 0.0
0.0 0.0 1.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_23_refined/23_small.png
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doc/tetrahedron_refinements/1-edge/edge_30_refined/30.txt
+10
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@@ -0,0 +1,10 @@
TET no. 0:
0.5, 0.0, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 1.0
0.0, 0.0, 0.0
TET no. 1:
0.5, 0.0, 0.0
0.0, 0.0, 1.0
0.0, 1.0, 0.0
1.0, 0.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_30_refined/30.vtk
+25
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@@ -0,0 +1,25 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.5 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
0.0 0.0 0.0
1.0 0.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_30_refined/30_small.png
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doc/tetrahedron_refinements/1-edge/edge_31_refined/31.pvsm
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doc/tetrahedron_refinements/1-edge/edge_31_refined/31.txt
+10
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@@ -0,0 +1,10 @@
TET no. 0:
0.0, 0.5, 0.0
0.0, 0.0, 1.0
1.0, 0.0, 0.0
0.0, 0.0, 0.0
TET no. 1:
0.0, 0.5, 0.0
1.0, 0.0, 0.0
0.0, 0.0, 1.0
0.0, 1.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_31_refined/31.vtk
+25
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@@ -0,0 +1,25 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.0 0.5 0.0
0.0 0.0 1.0
1.0 0.0 0.0
0.0 0.0 0.0
0.0 1.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_31_refined/31_small.png
BIN
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doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.png
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doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.txt
+15
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TET no. 0:
0.5, 0.5, 0.0
0.0, 1.0, 0.0
0.0, 0.5, 0.5
0.0, 0.0, 0.0
TET no. 1:
0.0, 0.5, 0.5
1.0, 0.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 0.0
TET no. 2:
1.0, 0.0, 0.0
0.0, 0.5, 0.5
0.0, 0.0, 1.0
0.0, 0.0, 0.0
doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.vtk
+29
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@@ -0,0 +1,29 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
0.5 0.5 0.0
0.0 1.0 0.0
0.0 0.5 0.5
0.0 0.0 0.0
1.0 0.0 0.0
0.0 0.0 1.0
CELLS 3 15
4 0 1 2 3
4 2 4 0 3
4 4 2 5 3
CELL_TYPES 3
10
10
10
CELL_DATA 3
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12_smal.png
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doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20.txt
+15
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@@ -0,0 +1,15 @@
TET no. 0:
0.5, 0.0, 0.5
1.0, 0.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 0.0
TET no. 1:
0.5, 0.5, 0.0
0.0, 0.0, 1.0
0.5, 0.0, 0.5
0.0, 0.0, 0.0
TET no. 2:
0.0, 0.0, 1.0
0.5, 0.5, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 0.0
doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20.vtk
+29
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@@ -0,0 +1,29 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
0.5 0.0 0.5
1.0 0.0 0.0
0.5 0.5 0.0
0.0 0.0 0.0
0.0 0.0 1.0
0.0 1.0 0.0
CELLS 3 15
4 0 1 2 3
4 2 4 0 3
4 4 2 5 3
CELL_TYPES 3
10
10
10
CELL_DATA 3
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20_small.png
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doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23.txt
+20
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@@ -0,0 +1,20 @@
TET no. 0:
1.0, 0.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 0.5
0.0, 0.0, 0.0
TET no. 1:
0.5, 0.5, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 0.5
0.0, 0.0, 0.0
TET no. 2:
0.5, 0.5, 0.0
0.0, 0.0, 0.5
0.0, 1.0, 0.0
0.0, 0.0, 1.0
TET no. 3:
1.0, 0.0, 0.0
0.0, 0.0, 0.5
0.5, 0.5, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23.vtk
+32
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
1.0 0.0 0.0
0.5 0.5 0.0
0.0 0.0 0.5
0.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
CELLS 4 20
4 0 1 2 3
4 1 4 2 3
4 1 2 4 5
4 0 2 1 5
CELL_TYPES 4
10
10
10
10
CELL_DATA 4
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
3
doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23_smal.png
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doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.png
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doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.txt
+15
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@@ -0,0 +1,15 @@
TET no. 0:
0.5, 0.5, 0.0
1.0, 0.0, 0.0
0.5, 0.0, 0.0
0.0, 0.0, 1.0
TET no. 1:
0.5, 0.0, 0.0
0.0, 1.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 1.0
TET no. 2:
0.0, 1.0, 0.0
0.5, 0.0, 0.0
0.0, 0.0, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.vtk
+29
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@@ -0,0 +1,29 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
0.5 0.5 0.0
1.0 0.0 0.0
0.5 0.0 0.0
0.0 0.0 1.0
0.0 1.0 0.0
0.0 0.0 0.0
CELLS 3 15
4 0 1 2 3
4 2 4 0 3
4 4 2 5 3
CELL_TYPES 3
10
10
10
CELL_DATA 3
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30_small.png
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doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31.txt
+15
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@@ -0,0 +1,15 @@
TET no. 0:
0.0, 0.5, 0.0
0.0, 1.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 1.0
TET no. 1:
0.5, 0.5, 0.0
0.0, 0.0, 0.0
0.0, 0.5, 0.0
0.0, 0.0, 1.0
TET no. 2:
0.0, 0.0, 0.0
0.5, 0.5, 0.0
1.0, 0.0, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31.vtk
+29
View File
@@ -0,0 +1,29 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
0.0 0.5 0.0
0.0 1.0 0.0
0.5 0.5 0.0
0.0 0.0 1.0
0.0 0.0 0.0
1.0 0.0 0.0
CELLS 3 15
4 0 1 2 3
4 2 4 0 3
4 4 2 5 3
CELL_TYPES 3
10
10
10
CELL_DATA 3
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31_small.png
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