H5hut/src
0
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Compare commits

base: H5hut/src:1.99.8
Branches Tags
H5hut/src:master H5hut/src:int8 H5hut/src:1.99.x H5hut/src:1.99 H5hut/src:1.6 H5hut/src:1.4 H5hut/src:1.2 H5hut/src:1.0
H5hut/src:H5hut-2.0.0rc7 H5hut/src:H5hut-2.0.0rc6 H5hut/src:H5hut-2.0.0rc5 H5hut/src:H5hut-2.0.0rc4 H5hut/src:H5hut-2.0.0rc1 H5hut/src:H5hut-2.0.0rc3 H5hut/src:H5hut-2.0.0rc2 H5hut/src:1.99.13 H5hut/src:1.99.12 H5hut/src:1.99.11 H5hut/src:1.99.10 H5hut/src:1.99.9 H5hut/src:1.99.8 H5hut/src:1.99.7 H5hut/src:H5Part-1.6.5 H5hut/src:1.99.6 H5hut/src:H5Part-1.6.4 H5hut/src:1.99.5 H5hut/src:H5Part-1.6.3 H5hut/src:1.99.4 H5hut/src:1.99.3 H5hut/src:1.99.2 H5hut/src:H5hut-1.99.1 H5hut/src:1.99.0 H5hut/src:H5Part-1.6.2 H5hut/src:H5Part-1.6.1 H5hut/src:H5Part-1.6.0 H5hut/src:H5Part-1.4 H5hut/src:H5Part-1.3.3 H5hut/src:H5Part-1.3.2 H5hut/src:H5Part-1.3.1
..
compare: H5hut/src:H5Part-1.6.1
Branches Tags
H5hut/src:master H5hut/src:int8 H5hut/src:1.99.x H5hut/src:1.99 H5hut/src:1.6 H5hut/src:1.4 H5hut/src:1.2 H5hut/src:1.0
H5hut/src:H5hut-2.0.0rc7 H5hut/src:H5hut-2.0.0rc6 H5hut/src:H5hut-2.0.0rc5 H5hut/src:H5hut-2.0.0rc4 H5hut/src:H5hut-2.0.0rc1 H5hut/src:H5hut-2.0.0rc3 H5hut/src:H5hut-2.0.0rc2 H5hut/src:1.99.13 H5hut/src:1.99.12 H5hut/src:1.99.11 H5hut/src:1.99.10 H5hut/src:1.99.9 H5hut/src:1.99.8 H5hut/src:1.99.7 H5hut/src:H5Part-1.6.5 H5hut/src:1.99.6 H5hut/src:H5Part-1.6.4 H5hut/src:1.99.5 H5hut/src:H5Part-1.6.3 H5hut/src:1.99.4 H5hut/src:1.99.3 H5hut/src:1.99.2 H5hut/src:H5hut-1.99.1 H5hut/src:1.99.0 H5hut/src:H5Part-1.6.2 H5hut/src:H5Part-1.6.1 H5hut/src:H5Part-1.6.0 H5hut/src:H5Part-1.4 H5hut/src:H5Part-1.3.3 H5hut/src:H5Part-1.3.2 H5hut/src:H5Part-1.3.1

54 Commits
1.99.8 .. H5Part-1.6.1

Author SHA1 Message Date
Marc Howison 1cd47a604a 1.6.1 tag 2010-06-21 15:39:41 +00:00
Marc Howison e3b93e4383 removed redundant VFD code in _H5Part_open and added an option for CORE VFD 2010-05-13 17:54:38 +00:00
Marc Howison 3e99a8ccfa fixed autoconf issue with PGI compilers and #define issue with OpenMPI 2010-05-03 20:04:34 +00:00
Marc Howison bb41cc3288 added documentation for file open flags; added flags to h5pt_openr_par_align(); added H5PartSetViewEmpty() and h5pt_setview_empty() calls for creating empty hyperslab selections (previously kludge was to use H5PartSetViewIndices with a null list); fixed memory leak with file open flags in the Fortran interface; fixed missing statement in 1.6.x logic for _H5Part_have_group() 2010-04-29 16:17:51 +00:00
Marc Howison cf1368291d fixed the H5PART_HAVE_HDF5_18 logic to work with the 1.9 snapshot; fixed broken test in _H5Part_have_group in the codepath for HDF5 1.6 2010-03-23 22:18:40 +00:00
Marc Howison 698b5e0c76 removed config.h.in 2010-03-11 23:04:27 +00:00
Marc Howison ea40b3272e fixes to lustre optimizations 2010-03-11 23:00:43 +00:00
Marc Howison 90f8506628 changed print functions to only print from proc 0 in parallel mode, except for 'debug detail' level which prints from all procs 2010-02-23 19:45:43 +00:00
Marc Howison a7727635a7 reverted the rename of xfer_prop because it is used in OPAL 2010-02-22 21:18:37 +00:00
Marc Howison 66476adf6a removed overloaded use of H5_USE_16_API so that it can be used with HDF 1.85 without invoking the HDF5 1.6 codepath in places 2010-02-22 18:35:37 +00:00
Marc Howison 1c4c62192d added chunking for H5Part; had to remove open object test because out-of-order file handle / property list closes were causing errors 2010-02-18 21:08:03 +00:00
Marc Howison fb660f8459 changed throttling routine; removed read-only restriction for setting step to existing steps; revised NEWS 2010-02-18 18:56:39 +00:00
Marc Howison 20bff7f87c fixes for HDF5 1.6.x 2010-02-17 03:19:20 +00:00
Marc Howison 64c2b96f27 incorporated fixes from Gunther for 1.6.0 release 2010-02-16 18:46:57 +00:00
Marc Howison 1d23bdab85 1.6 release: moved 1.5 to 1.6; copied 1.6 to tags/H5Part-1.6.0; copied 1.6 to 1.7 2010-02-16 17:06:40 +00:00
Marc Howison 0de2f00b08 fixed H5PartGetNumParticles to correctly count indexed views; added type parameter to H5BlockGetFieldInfo/ByName 2010-02-11 22:28:49 +00:00
Marc Howison 3300a665b5 updates to makefiles; added CrayXT configure crutch 2010-02-11 19:39:25 +00:00
Marc Howison f671d1ab9f fixed missing test/testf.F90 2010-02-11 17:42:56 +00:00
Marc Howison ec7184bf2d fixed missing test/read.c 2010-02-11 17:42:18 +00:00
Marc Howison 46574c2482 fixed bug in strided selection; added examples dir with a strided write Fortran program (more examples to come...) 2010-02-11 17:34:50 +00:00
Marc Howison 2bb96c6f69 updated NEWS with details about 1.6 changes; changed hsize_t type in H5PartSetViewIndices; fixes to the build system; fixed bugs that were preventing the use of H5PartSetView during writes; added open object checks to regression test 2010-02-10 23:33:32 +00:00
Marc Howison 181c03008f major changes in preparations for 1.6 release: will add details to CHANGES 2010-02-10 01:02:14 +00:00
Marc Howison 7c4126c2c8 integrated changes to iterators from Allen; refactored the HDF 1.6 vs. 1.8 API #ifs 2010-01-14 21:25:29 +00:00
Marc Howison 90c6032c34 fixed type id leaks found by Allen 2010-01-11 21:29:26 +00:00
Marc Howison f40afd9670 fixed H5Oget_info() bug from Allen 2010-01-11 20:37:05 +00:00
Marc Howison c8b49c520f fixed attribute read functions to use string type 2010-01-06 00:12:55 +00:00
Marc Howison a65e9586c5 fixed string attribute bug reported by Allen Sanderson 2010-01-05 23:26:23 +00:00
Marc Howison 3c6065e2f9 flags are now stored in H5PartFile struct; added the 'throttle' as a runtime parameter instead of a compiler flag; merged H5Bench into the tests suite; compiles but need to perform regression tests 2009-10-16 22:37:20 +00:00
Marc Howison c3cd4d7c99 set collective mode as default for H5Part 2009-10-12 22:13:19 +00:00
Marc Howison fdd69338ea updated doxygen groups for H5(Multi)Block 2009-10-07 18:12:03 +00:00
Marc Howison 5d4d62f5c2 typo in Fortran linkage; fixed doxygen to use parallel flag 2009-10-06 17:58:39 +00:00
Marc Howison 195d58693a added throttling for reading 2009-09-10 04:45:48 +00:00
Marc Howison d149d8a5dd added write throttling for large concurency jobs with MPI-POSIX VFD 2009-09-10 02:49:59 +00:00
Marc Howison 8dac86872b added a proc shift option to H5MultiBlock, used in I/O benchmarking to defeat caching 2009-08-30 18:02:04 +00:00
Marc Howison 15ad7b21c5 added MPI_Comm_f2c in Fortran-C bindings 2009-08-25 17:40:49 +00:00
Marc Howison 1b8073b82b added API calls for int32 and float32 step attribs 2009-08-18 15:47:50 +00:00
Marc Howison 06aef8a08f fixed bug in halo exchange when there is only one proc in the direction of the exchange 2009-07-10 21:34:44 +00:00
Marc Howison 57ce44db8b fixed format flag for H5MultiBlock timing output 2009-07-09 01:36:26 +00:00
Marc Howison 1104b9ff93 added timing output for H5MultiBlock reads 2009-07-08 20:14:56 +00:00
Marc Howison 01aa167339 changes to _H5Block_init so that only 1 dataset creation plist is created and reused 2009-07-06 21:31:42 +00:00
Marc Howison cd0391db7e added a test for existing datasets to write calls 2009-07-06 21:07:30 +00:00
Marc Howison 207e49716c Implemented two halo exchange routines: one uses an MPI vector datatype and the other manually packs and unpacks the send and recv buffers. The MPI datatype method is not currently working due to a "double free" error in libc. The manual buffering method has been debuged and works. 2009-07-06 16:42:03 +00:00
Marc Howison 97a14cc488 fixed Fortran compile error with gfortran (had to move f90 files to F90) 2009-07-02 18:46:06 +00:00
Marc Howison 13d7784c44 added file open flags for Fortran interface 2009-07-02 18:22:30 +00:00
Marc Howison 00b0e87f10 forgot to remove existing write attrib functions from H5BlockF.inc and H5BlockF.c after adding them to the code generator 2009-07-02 17:06:12 +00:00
Marc Howison 6d38bf442d * H5Block: added attribute writing functions to code generator: still need to add reading functions 
* H5MultiBlock: added halo exchange routine: still needs debugging
 2009-07-02 16:46:07 +00:00
Marc Howison 3d4da8653a fixed bug with layout debug info always printing the layout for proc 0 2009-06-24 18:45:23 +00:00
Marc Howison 0e853656cd * fixed bug in h5bl_defin3dchunkdims call that was using variables addresses ins 
* added new MultiBlock module that is used for efficiently loading regular
rectilinear grid blocks (using chunking) and handling ghost zones in a
distributed-memory environment
** still need to add the "halo exchange" routine for reshuffling ghost regions
** performed some basic testing of read/write functionality

~Mark
 2009-06-24 18:11:39 +00:00
Marc Howison 3d1ed0e92a found incorrect == comparison with read flag; replaced with & 2009-06-19 22:34:22 +00:00
Marc Howison b5e3756f57 fixed bug in H5Gopen2 where I was using the wrong group id 2009-06-19 18:34:57 +00:00
Marc Howison 122e913f08 Merged changes from LBL, including: 
* read/write call variants for different datatypes
* HDF5 properties tuned for lustre filesystems and the Cray XT (enabled using flags passed during file open)
* HDF5 chunking for field data
* HDF5 alignment (set during file open)
* support for both HDF5 1.6 and 1.8 using #if statements
* a new error reporting level: debug_detail (HDF5 errors are now printed at debug level 1 by default)

These changes have undergone limited testing.
I will begin using this version for my H5Part projects so that I can test it more thoroughly.

~Mark
 2009-06-18 20:29:02 +00:00
gsell a2d2a02cd2 branch new development verson 2008-06-24 19:04:45 +00:00
gsell 249117c89e serial and parallel code merged 2008-06-24 18:59:06 +00:00
gsell 463ef08da9 branch stable 1.4 version 2007-09-21 09:53:26 +00:00
666 changed files with 23495 additions and 251196 deletions
Expand all files Collapse all files
.gitattributes
+68 -597
View File
@@ -2,620 +2,91 @@
/AUTHORS -text
/COPYING -text
/ChangeLog -text
/GNUmakefile.orig -text
/INSTALL -text
/Makefile.am -text
/Makefile.orig -text
/NEWS -text
/README -text
/autogen.sh -text
/config.guess -text
/config.sub -text
/configure-crayxt -text
/configure.ac -text
/depcomp -text
doc/Doxyfile -text
doc/Examples/meshexample.dxf -text
doc/Examples/meshexample.txt -text
doc/Examples/simple_tet.vtk -text
doc/Examples/simple_tet_level0.vtk -text
doc/Examples/simple_tet_level1.vtk -text
doc/Examples/simple_tet_level2.vtk -text
doc/Examples/trimesh_dgraph_level0.metis -text
doc/Examples/trimesh_dgraph_level0.metis.part.2 -text
doc/Examples/trimesh_dgraph_level0.metis.part.3 -text
doc/Examples/trimesh_dnode_level1.metis -text
doc/Examples/trimesh_dnode_level1.metis.part.2 -text
doc/Examples/trimesh_level0.metis -text
doc/Examples/trimesh_level0.metis.epart.2 -text
doc/Examples/trimesh_level0.metis.ngraph -text
doc/Examples/trimesh_level0.metis.npart.2 -text
doc/Examples/trimesh_level1.metis -text
doc/Examples/trimesh_level1.metis.part.2 -text
doc/H5.dox -text
doc/H5X_File_Format.txt -text
doc/Makefile.am -text
doc/doxyfooter -text
doc/doxyheader -text
doc/html2twiki -text
doc/meshexample.dxf -text
doc/tetrahedron_refinements/1-edge/edge_01_refined/01.png -text
doc/tetrahedron_refinements/1-edge/edge_01_refined/01.pvsm -text
doc/tetrahedron_refinements/1-edge/edge_01_refined/01.txt -text
doc/tetrahedron_refinements/1-edge/edge_01_refined/01.vtk -text
doc/tetrahedron_refinements/1-edge/edge_01_refined/01_smal.png -text
doc/tetrahedron_refinements/1-edge/edge_01_refined/01_small.png -text
doc/tetrahedron_refinements/1-edge/edge_12_refined/12.png -text
doc/tetrahedron_refinements/1-edge/edge_12_refined/12.pvsm -text
doc/tetrahedron_refinements/1-edge/edge_12_refined/12.txt -text
doc/tetrahedron_refinements/1-edge/edge_12_refined/12.vtk -text
doc/tetrahedron_refinements/1-edge/edge_12_refined/12_small.png -text
doc/tetrahedron_refinements/1-edge/edge_20_refined/20.png -text
doc/tetrahedron_refinements/1-edge/edge_20_refined/20.pvsm -text
doc/tetrahedron_refinements/1-edge/edge_20_refined/20.txt -text
doc/tetrahedron_refinements/1-edge/edge_20_refined/20.vtk -text
doc/tetrahedron_refinements/1-edge/edge_20_refined/20_small.png -text
doc/tetrahedron_refinements/1-edge/edge_23_refined/23.png -text
doc/tetrahedron_refinements/1-edge/edge_23_refined/23.pvsm -text
doc/tetrahedron_refinements/1-edge/edge_23_refined/23.txt -text
doc/tetrahedron_refinements/1-edge/edge_23_refined/23.vtk -text
doc/tetrahedron_refinements/1-edge/edge_23_refined/23_small.png -text
doc/tetrahedron_refinements/1-edge/edge_30_refined/30.png -text
doc/tetrahedron_refinements/1-edge/edge_30_refined/30.pvsm -text
doc/tetrahedron_refinements/1-edge/edge_30_refined/30.txt -text
doc/tetrahedron_refinements/1-edge/edge_30_refined/30.vtk -text
doc/tetrahedron_refinements/1-edge/edge_30_refined/30_small.png -text
doc/tetrahedron_refinements/1-edge/edge_31_refined/31.png -text
doc/tetrahedron_refinements/1-edge/edge_31_refined/31.pvsm -text
doc/tetrahedron_refinements/1-edge/edge_31_refined/31.txt -text
doc/tetrahedron_refinements/1-edge/edge_31_refined/31.vtk -text
doc/tetrahedron_refinements/1-edge/edge_31_refined/31_small.png -text
doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.png -text
doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.pvsm -text
doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.txt -text
doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.vtk -text
doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12_smal.png -text
doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12_small.png -text
doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20.png -text
doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20.pvsm -text
doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20.txt -text
doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20.vtk -text
doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20_small.png -text
doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23.png -text
doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23.pvsm -text
doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23.txt -text
doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23.vtk -text
doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23_smal.png -text
doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23_small.png -text
doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.png -text
doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.pvsm -text
doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.txt -text
doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.vtk -text
doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30_small.png -text
doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31.png -text
doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31.pvsm -text
doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31.txt -text
doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31.vtk -text
doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31_small.png -text
doc/tetrahedron_refinements/2-edges/edge_12-20_refined/12-20.png -text
doc/tetrahedron_refinements/2-edges/edge_12-20_refined/12-20.pvsm -text
doc/tetrahedron_refinements/2-edges/edge_12-20_refined/12-20.txt -text
doc/tetrahedron_refinements/2-edges/edge_12-20_refined/12-20.vtk -text
doc/tetrahedron_refinements/2-edges/edge_12-20_refined/12-20_small.png -text
doc/tetrahedron_refinements/2-edges/edge_12-23_refined/12-23.png -text
doc/tetrahedron_refinements/2-edges/edge_12-23_refined/12-23.pvsm -text
doc/tetrahedron_refinements/2-edges/edge_12-23_refined/12-23.txt -text
doc/tetrahedron_refinements/2-edges/edge_12-23_refined/12-23.vtk -text
doc/tetrahedron_refinements/2-edges/edge_12-23_refined/12-23_small.png -text
doc/tetrahedron_refinements/2-edges/edge_12-30_refined/12-30.png -text
doc/tetrahedron_refinements/2-edges/edge_12-30_refined/12-30.pvsm -text
doc/tetrahedron_refinements/2-edges/edge_12-30_refined/12-30.txt -text
doc/tetrahedron_refinements/2-edges/edge_12-30_refined/12-30.vtk -text
doc/tetrahedron_refinements/2-edges/edge_12-30_refined/12-30_small.png -text
doc/tetrahedron_refinements/2-edges/edge_12-31_refined/12-31.png -text
doc/tetrahedron_refinements/2-edges/edge_12-31_refined/12-31.pvsm -text
doc/tetrahedron_refinements/2-edges/edge_12-31_refined/12-31.txt -text
doc/tetrahedron_refinements/2-edges/edge_12-31_refined/12-31.vtk -text
doc/tetrahedron_refinements/2-edges/edge_12-31_refined/12-31_small.png -text
doc/tetrahedron_refinements/2-edges/edge_20-23_refined/20-23.png -text
doc/tetrahedron_refinements/2-edges/edge_20-23_refined/20-23.pvsm -text
doc/tetrahedron_refinements/2-edges/edge_20-23_refined/20-23.txt -text
doc/tetrahedron_refinements/2-edges/edge_20-23_refined/20-23.vtk -text
doc/tetrahedron_refinements/2-edges/edge_20-23_refined/20-23_small.png -text
doc/tetrahedron_refinements/2-edges/edge_20-30_refined/20-30.png -text
doc/tetrahedron_refinements/2-edges/edge_20-30_refined/20-30.pvsm -text
doc/tetrahedron_refinements/2-edges/edge_20-30_refined/20-30.txt -text
doc/tetrahedron_refinements/2-edges/edge_20-30_refined/20-30.vtk -text
doc/tetrahedron_refinements/2-edges/edge_20-30_refined/20-30_small.png -text
doc/tetrahedron_refinements/2-edges/edge_20-31_refined/20-31.png -text
doc/tetrahedron_refinements/2-edges/edge_20-31_refined/20-31.pvsm -text
doc/tetrahedron_refinements/2-edges/edge_20-31_refined/20-31.txt -text
doc/tetrahedron_refinements/2-edges/edge_20-31_refined/20-31.vtk -text
doc/tetrahedron_refinements/2-edges/edge_20-31_refined/20-31_small.png -text
doc/tetrahedron_refinements/2-edges/edge_23-30_refined/23-30.png -text
doc/tetrahedron_refinements/2-edges/edge_23-30_refined/23-30.pvsm -text
doc/tetrahedron_refinements/2-edges/edge_23-30_refined/23-30.txt -text
doc/tetrahedron_refinements/2-edges/edge_23-30_refined/23-30.vtk -text
doc/tetrahedron_refinements/2-edges/edge_23-30_refined/23-30_small.png -text
doc/tetrahedron_refinements/2-edges/edge_23-31_refined/23-31.png -text
doc/tetrahedron_refinements/2-edges/edge_23-31_refined/23-31.pvsm -text
doc/tetrahedron_refinements/2-edges/edge_23-31_refined/23-31.txt -text
doc/tetrahedron_refinements/2-edges/edge_23-31_refined/23-31.vtk -text
doc/tetrahedron_refinements/2-edges/edge_23-31_refined/23-31_small.png -text
doc/tetrahedron_refinements/2-edges/edge_30-31_refined/30-31.png -text
doc/tetrahedron_refinements/2-edges/edge_30-31_refined/30-31.pvsm -text
doc/tetrahedron_refinements/2-edges/edge_30-31_refined/30-31.txt -text
doc/tetrahedron_refinements/2-edges/edge_30-31_refined/30-31.vtk -text
doc/tetrahedron_refinements/2-edges/edge_30-31_refined/30-31_small.png -text
doc/tetrahedron_refinements/3-edges/edge_01-12-20_refined/01-12-20.png -text
doc/tetrahedron_refinements/3-edges/edge_01-12-20_refined/01-12-20.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_01-12-20_refined/01-12-20.txt -text
doc/tetrahedron_refinements/3-edges/edge_01-12-20_refined/01-12-20.vtk -text
doc/tetrahedron_refinements/3-edges/edge_01-12-20_refined/01-12-20_small.png -text
doc/tetrahedron_refinements/3-edges/edge_01-12-23_refined/01-12-23.png -text
doc/tetrahedron_refinements/3-edges/edge_01-12-23_refined/01-12-23.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_01-12-23_refined/01-12-23.txt -text
doc/tetrahedron_refinements/3-edges/edge_01-12-23_refined/01-12-23.vtk -text
doc/tetrahedron_refinements/3-edges/edge_01-12-23_refined/01-12-23_small.png -text
doc/tetrahedron_refinements/3-edges/edge_01-12-30_refined/01-12-30.png -text
doc/tetrahedron_refinements/3-edges/edge_01-12-30_refined/01-12-30.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_01-12-30_refined/01-12-30.txt -text
doc/tetrahedron_refinements/3-edges/edge_01-12-30_refined/01-12-30.vtk -text
doc/tetrahedron_refinements/3-edges/edge_01-12-30_refined/01-12-30_small.png -text
doc/tetrahedron_refinements/3-edges/edge_01-12-31_refined/01-12-31.png -text
doc/tetrahedron_refinements/3-edges/edge_01-12-31_refined/01-12-31.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_01-12-31_refined/01-12-31.txt -text
doc/tetrahedron_refinements/3-edges/edge_01-12-31_refined/01-12-31.vtk -text
doc/tetrahedron_refinements/3-edges/edge_01-12-31_refined/01-12-31_small.png -text
doc/tetrahedron_refinements/3-edges/edge_01-20-23_refined/01-20-23.png -text
doc/tetrahedron_refinements/3-edges/edge_01-20-23_refined/01-20-23.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_01-20-23_refined/01-20-23.txt -text
doc/tetrahedron_refinements/3-edges/edge_01-20-23_refined/01-20-23.vtk -text
doc/tetrahedron_refinements/3-edges/edge_01-20-23_refined/01-20-23_small.png -text
doc/tetrahedron_refinements/3-edges/edge_01-20-30_refined/01-20-30.png -text
doc/tetrahedron_refinements/3-edges/edge_01-20-30_refined/01-20-30.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_01-20-30_refined/01-20-30.txt -text
doc/tetrahedron_refinements/3-edges/edge_01-20-30_refined/01-20-30.vtk -text
doc/tetrahedron_refinements/3-edges/edge_01-20-30_refined/01-20-30_small.png -text
doc/tetrahedron_refinements/3-edges/edge_01-20-31_refined/01-20-31.png -text
doc/tetrahedron_refinements/3-edges/edge_01-20-31_refined/01-20-31.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_01-20-31_refined/01-20-31.txt -text
doc/tetrahedron_refinements/3-edges/edge_01-20-31_refined/01-20-31.vtk -text
doc/tetrahedron_refinements/3-edges/edge_01-20-31_refined/01-20-31_small.png -text
doc/tetrahedron_refinements/3-edges/edge_01-23-30_refined/01-23-30.png -text
doc/tetrahedron_refinements/3-edges/edge_01-23-30_refined/01-23-30.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_01-23-30_refined/01-23-30.txt -text
doc/tetrahedron_refinements/3-edges/edge_01-23-30_refined/01-23-30.vtk -text
doc/tetrahedron_refinements/3-edges/edge_01-23-30_refined/01-23-30_small.png -text
doc/tetrahedron_refinements/3-edges/edge_01-23-31_refined/01-23-31.png -text
doc/tetrahedron_refinements/3-edges/edge_01-23-31_refined/01-23-31.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_01-23-31_refined/01-23-31.txt -text
doc/tetrahedron_refinements/3-edges/edge_01-23-31_refined/01-23-31.vtk -text
doc/tetrahedron_refinements/3-edges/edge_01-23-31_refined/01-23-31_small.png -text
doc/tetrahedron_refinements/3-edges/edge_01-30-31_refined/01-30-31.png -text
doc/tetrahedron_refinements/3-edges/edge_01-30-31_refined/01-30-31.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_01-30-31_refined/01-30-31.txt -text
doc/tetrahedron_refinements/3-edges/edge_01-30-31_refined/01-30-31.vtk -text
doc/tetrahedron_refinements/3-edges/edge_01-30-31_refined/01-30-31_small.png -text
doc/tetrahedron_refinements/3-edges/edge_12-20-23_refined/12-20-23.png -text
doc/tetrahedron_refinements/3-edges/edge_12-20-23_refined/12-20-23.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_12-20-23_refined/12-20-23.txt -text
doc/tetrahedron_refinements/3-edges/edge_12-20-23_refined/12-20-23.vtk -text
doc/tetrahedron_refinements/3-edges/edge_12-20-23_refined/12-20-23_small.png -text
doc/tetrahedron_refinements/3-edges/edge_12-20-30_refined/12-20-30.png -text
doc/tetrahedron_refinements/3-edges/edge_12-20-30_refined/12-20-30.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_12-20-30_refined/12-20-30.txt -text
doc/tetrahedron_refinements/3-edges/edge_12-20-30_refined/12-20-30.vtk -text
doc/tetrahedron_refinements/3-edges/edge_12-20-30_refined/12-20-30_small.png -text
doc/tetrahedron_refinements/3-edges/edge_12-20-31_refined/12-20-31.png -text
doc/tetrahedron_refinements/3-edges/edge_12-20-31_refined/12-20-31.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_12-20-31_refined/12-20-31.txt -text
doc/tetrahedron_refinements/3-edges/edge_12-20-31_refined/12-20-31.vtk -text
doc/tetrahedron_refinements/3-edges/edge_12-20-31_refined/12-20-31_small.png -text
doc/tetrahedron_refinements/3-edges/edge_12-23-30_refined/12-23-30.png -text
doc/tetrahedron_refinements/3-edges/edge_12-23-30_refined/12-23-30.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_12-23-30_refined/12-23-30.txt -text
doc/tetrahedron_refinements/3-edges/edge_12-23-30_refined/12-23-30.vtk -text
doc/tetrahedron_refinements/3-edges/edge_12-23-30_refined/12-23-30_small.png -text
doc/tetrahedron_refinements/3-edges/edge_12-23-31_refined/12-23-31.png -text
doc/tetrahedron_refinements/3-edges/edge_12-23-31_refined/12-23-31.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_12-23-31_refined/12-23-31.txt -text
doc/tetrahedron_refinements/3-edges/edge_12-23-31_refined/12-23-31.vtk -text
doc/tetrahedron_refinements/3-edges/edge_12-23-31_refined/12-23-31_small.png -text
doc/tetrahedron_refinements/3-edges/edge_12-30-31_refined/12-30-31.png -text
doc/tetrahedron_refinements/3-edges/edge_12-30-31_refined/12-30-31.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_12-30-31_refined/12-30-31.txt -text
doc/tetrahedron_refinements/3-edges/edge_12-30-31_refined/12-30-31.vtk -text
doc/tetrahedron_refinements/3-edges/edge_12-30-31_refined/12-30-31_small.png -text
doc/tetrahedron_refinements/3-edges/edge_20-23-30_refined/20-23-30.png -text
doc/tetrahedron_refinements/3-edges/edge_20-23-30_refined/20-23-30.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_20-23-30_refined/20-23-30.txt -text
doc/tetrahedron_refinements/3-edges/edge_20-23-30_refined/20-23-30.vtk -text
doc/tetrahedron_refinements/3-edges/edge_20-23-30_refined/20-23-30_small.png -text
doc/tetrahedron_refinements/3-edges/edge_20-23-31_refined/20-23-31.png -text
doc/tetrahedron_refinements/3-edges/edge_20-23-31_refined/20-23-31.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_20-23-31_refined/20-23-31.txt -text
doc/tetrahedron_refinements/3-edges/edge_20-23-31_refined/20-23-31.vtk -text
doc/tetrahedron_refinements/3-edges/edge_20-23-31_refined/20-23-31_small.png -text
doc/tetrahedron_refinements/3-edges/edge_20-30-31_refined/20-30-31.png -text
doc/tetrahedron_refinements/3-edges/edge_20-30-31_refined/20-30-31.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_20-30-31_refined/20-30-31.txt -text
doc/tetrahedron_refinements/3-edges/edge_20-30-31_refined/20-30-31.vtk -text
doc/tetrahedron_refinements/3-edges/edge_20-30-31_refined/20-30-31_small.png -text
doc/tetrahedron_refinements/3-edges/edge_23-30-31_refined/23-30-31.png -text
doc/tetrahedron_refinements/3-edges/edge_23-30-31_refined/23-30-31.pvsm -text
doc/tetrahedron_refinements/3-edges/edge_23-30-31_refined/23-30-31.txt -text
doc/tetrahedron_refinements/3-edges/edge_23-30-31_refined/23-30-31.vtk -text
doc/tetrahedron_refinements/3-edges/edge_23-30-31_refined/23-30-31_small.png -text
doc/tetrahedron_refinements/4-edges/edge_01-12-20-23_refined/01-12-20-23.png -text
doc/tetrahedron_refinements/4-edges/edge_01-12-20-23_refined/01-12-20-23.pvsm -text
doc/tetrahedron_refinements/4-edges/edge_01-12-20-23_refined/01-12-20-23.txt -text
doc/tetrahedron_refinements/4-edges/edge_01-12-20-23_refined/01-12-20-23.vtk -text
doc/tetrahedron_refinements/4-edges/edge_01-12-20-23_refined/01-12-20-23_small.png -text
doc/tetrahedron_refinements/4-edges/edge_01-12-20-30_refined/01-12-20-30.png -text
doc/tetrahedron_refinements/4-edges/edge_01-12-20-30_refined/01-12-20-30.pvsm -text
doc/tetrahedron_refinements/4-edges/edge_01-12-20-30_refined/01-12-20-30.txt -text
doc/tetrahedron_refinements/4-edges/edge_01-12-20-30_refined/01-12-20-30.vtk -text
doc/tetrahedron_refinements/4-edges/edge_01-12-20-30_refined/01-12-20-30_small.png -text
doc/tetrahedron_refinements/4-edges/edge_01-12-20-31_refined/01-12-20-31.png -text
doc/tetrahedron_refinements/4-edges/edge_01-12-20-31_refined/01-12-20-31.pvsm -text
doc/tetrahedron_refinements/4-edges/edge_01-12-20-31_refined/01-12-20-31.txt -text
doc/tetrahedron_refinements/4-edges/edge_01-12-20-31_refined/01-12-20-31.vtk -text
doc/tetrahedron_refinements/4-edges/edge_01-12-20-31_refined/01-12-20-31_small.png -text
doc/tetrahedron_refinements/4-edges/edge_01-12-23-30_refined/01-12-23-30.png -text
doc/tetrahedron_refinements/4-edges/edge_01-12-23-30_refined/01-12-23-30.pvsm -text
doc/tetrahedron_refinements/4-edges/edge_01-12-23-30_refined/01-12-23-30.txt -text
doc/tetrahedron_refinements/4-edges/edge_01-12-23-30_refined/01-12-23-30.vtk -text
doc/tetrahedron_refinements/4-edges/edge_01-12-23-30_refined/01-12-23-30_small.png -text
doc/tetrahedron_refinements/4-edges/edge_01-12-23-31_refined/01-12-23-31.png -text
doc/tetrahedron_refinements/4-edges/edge_01-12-23-31_refined/01-12-23-31.pvsm -text
doc/tetrahedron_refinements/4-edges/edge_01-12-23-31_refined/01-12-23-31.txt -text
doc/tetrahedron_refinements/4-edges/edge_01-12-23-31_refined/01-12-23-31.vtk -text
doc/tetrahedron_refinements/4-edges/edge_01-12-23-31_refined/01-12-23-31_small.png -text
doc/tetrahedron_refinements/4-edges/edge_01-12-30-31_refined/01-12-30-31.png -text
doc/tetrahedron_refinements/4-edges/edge_01-12-30-31_refined/01-12-30-31.pvsm -text
doc/tetrahedron_refinements/4-edges/edge_01-12-30-31_refined/01-12-30-31.txt -text
doc/tetrahedron_refinements/4-edges/edge_01-12-30-31_refined/01-12-30-31.vtk -text
doc/tetrahedron_refinements/4-edges/edge_01-12-30-31_refined/01-12-30-31_small.png -text
doc/tetrahedron_refinements/4-edges/edge_01-20-23-30_refined/01-20-23-30.png -text
doc/tetrahedron_refinements/4-edges/edge_01-20-23-30_refined/01-20-23-30.pvsm -text
doc/tetrahedron_refinements/4-edges/edge_01-20-23-30_refined/01-20-23-30.txt -text
doc/tetrahedron_refinements/4-edges/edge_01-20-23-30_refined/01-20-23-30.vtk -text
doc/tetrahedron_refinements/4-edges/edge_01-20-23-30_refined/01-20-23-30_small.png -text
doc/tetrahedron_refinements/4-edges/edge_01-20-23-31_refined/01-20-23-31.png -text
doc/tetrahedron_refinements/4-edges/edge_01-20-23-31_refined/01-20-23-31.pvsm -text
doc/tetrahedron_refinements/4-edges/edge_01-20-23-31_refined/01-20-23-31.txt -text
doc/tetrahedron_refinements/4-edges/edge_01-20-23-31_refined/01-20-23-31.vtk -text
doc/tetrahedron_refinements/4-edges/edge_01-20-23-31_refined/01-20-23-31_small.png -text
doc/tetrahedron_refinements/4-edges/edge_01-20-30-31_refined/01-20-30-31.png -text
doc/tetrahedron_refinements/4-edges/edge_01-20-30-31_refined/01-20-30-31.pvsm -text
doc/tetrahedron_refinements/4-edges/edge_01-20-30-31_refined/01-20-30-31.txt -text
doc/tetrahedron_refinements/4-edges/edge_01-20-30-31_refined/01-20-30-31.vtk -text
doc/tetrahedron_refinements/4-edges/edge_01-20-30-31_refined/01-20-30-31_small.png -text
doc/tetrahedron_refinements/4-edges/edge_01-23-30-31_refined/01-23-30-31.png -text
doc/tetrahedron_refinements/4-edges/edge_01-23-30-31_refined/01-23-30-31.pvsm -text
doc/tetrahedron_refinements/4-edges/edge_01-23-30-31_refined/01-23-30-31.txt -text
doc/tetrahedron_refinements/4-edges/edge_01-23-30-31_refined/01-23-30-31.vtk -text
doc/tetrahedron_refinements/4-edges/edge_01-23-30-31_refined/01-23-30-31_small.png -text
doc/tetrahedron_refinements/4-edges/edge_12-20-23-30_refined/12-20-23-30.png -text
doc/tetrahedron_refinements/4-edges/edge_12-20-23-30_refined/12-20-23-30.pvsm -text
doc/tetrahedron_refinements/4-edges/edge_12-20-23-30_refined/12-20-23-30.txt -text
doc/tetrahedron_refinements/4-edges/edge_12-20-23-30_refined/12-20-23-30.vtk -text
doc/tetrahedron_refinements/4-edges/edge_12-20-23-30_refined/12-20-23-30_small.png -text
doc/tetrahedron_refinements/4-edges/edge_12-20-23-31_refined/12-20-23-31.png -text
doc/tetrahedron_refinements/4-edges/edge_12-20-23-31_refined/12-20-23-31.pvsm -text
doc/tetrahedron_refinements/4-edges/edge_12-20-23-31_refined/12-20-23-31.txt -text
doc/tetrahedron_refinements/4-edges/edge_12-20-23-31_refined/12-20-23-31.vtk -text
doc/tetrahedron_refinements/4-edges/edge_12-20-23-31_refined/12-20-23-31_small.png -text
doc/tetrahedron_refinements/4-edges/edge_12-20-30-31_refined/12-20-30-31.png -text
doc/tetrahedron_refinements/4-edges/edge_12-20-30-31_refined/12-20-30-31.pvsm -text
doc/tetrahedron_refinements/4-edges/edge_12-20-30-31_refined/12-20-30-31.txt -text
doc/tetrahedron_refinements/4-edges/edge_12-20-30-31_refined/12-20-30-31.vtk -text
doc/tetrahedron_refinements/4-edges/edge_12-20-30-31_refined/12-20-30-31_small.png -text
doc/tetrahedron_refinements/4-edges/edge_12-23-30-31_refined/12-23-30-31.png -text
doc/tetrahedron_refinements/4-edges/edge_12-23-30-31_refined/12-23-30-31.pvsm -text
doc/tetrahedron_refinements/4-edges/edge_12-23-30-31_refined/12-23-30-31.txt -text
doc/tetrahedron_refinements/4-edges/edge_12-23-30-31_refined/12-23-30-31.vtk -text
doc/tetrahedron_refinements/4-edges/edge_12-23-30-31_refined/12-23-30-31_small.png -text
doc/tetrahedron_refinements/4-edges/edge_20-23-30-31_refined/20-23-30-31.png -text
doc/tetrahedron_refinements/4-edges/edge_20-23-30-31_refined/20-23-30-31.pvsm -text
doc/tetrahedron_refinements/4-edges/edge_20-23-30-31_refined/20-23-30-31.txt -text
doc/tetrahedron_refinements/4-edges/edge_20-23-30-31_refined/20-23-30-31.vtk -text
doc/tetrahedron_refinements/4-edges/edge_20-23-30-31_refined/20-23-30-31_small.png -text
doc/tetrahedron_refinements/5-edges/edge_01-12-20-23-30_refined/01-12-20-23-30.png -text
doc/tetrahedron_refinements/5-edges/edge_01-12-20-23-30_refined/01-12-20-23-30.pvsm -text
doc/tetrahedron_refinements/5-edges/edge_01-12-20-23-30_refined/01-12-20-23-30.txt -text
doc/tetrahedron_refinements/5-edges/edge_01-12-20-23-30_refined/01-12-20-23-30.vtk -text
doc/tetrahedron_refinements/5-edges/edge_01-12-20-23-30_refined/01-12-20-23-30_small.png -text
doc/tetrahedron_refinements/5-edges/edge_01-12-20-23-31_refined/01-12-20-23-31.png -text
doc/tetrahedron_refinements/5-edges/edge_01-12-20-23-31_refined/01-12-20-23-31.pvsm -text
doc/tetrahedron_refinements/5-edges/edge_01-12-20-23-31_refined/01-12-20-23-31.txt -text
doc/tetrahedron_refinements/5-edges/edge_01-12-20-23-31_refined/01-12-20-23-31.vtk -text
doc/tetrahedron_refinements/5-edges/edge_01-12-20-23-31_refined/01-12-20-23-31_small.png -text
doc/tetrahedron_refinements/5-edges/edge_01-12-20-30-31_refined/01-12-20-30-31.png -text
doc/tetrahedron_refinements/5-edges/edge_01-12-20-30-31_refined/01-12-20-30-31.pvsm -text
doc/tetrahedron_refinements/5-edges/edge_01-12-20-30-31_refined/01-12-20-30-31.txt -text
doc/tetrahedron_refinements/5-edges/edge_01-12-20-30-31_refined/01-12-20-30-31.vtk -text
doc/tetrahedron_refinements/5-edges/edge_01-12-20-30-31_refined/01-12-20-30-31_small.png -text
doc/tetrahedron_refinements/5-edges/edge_01-12-23-30-31_refined/01-12-23-30-31.png -text
doc/tetrahedron_refinements/5-edges/edge_01-12-23-30-31_refined/01-12-23-30-31.pvsm -text
doc/tetrahedron_refinements/5-edges/edge_01-12-23-30-31_refined/01-12-23-30-31.txt -text
doc/tetrahedron_refinements/5-edges/edge_01-12-23-30-31_refined/01-12-23-30-31.vtk -text
doc/tetrahedron_refinements/5-edges/edge_01-12-23-30-31_refined/01-12-23-30-31_small.png -text
doc/tetrahedron_refinements/5-edges/edge_01-20-23-30-31_refined/01-20-23-30-31.png -text
doc/tetrahedron_refinements/5-edges/edge_01-20-23-30-31_refined/01-20-23-30-31.pvsm -text
doc/tetrahedron_refinements/5-edges/edge_01-20-23-30-31_refined/01-20-23-30-31.txt -text
doc/tetrahedron_refinements/5-edges/edge_01-20-23-30-31_refined/01-20-23-30-31.vtk -text
doc/tetrahedron_refinements/5-edges/edge_01-20-23-30-31_refined/01-20-23-30-31_small.png -text
doc/tetrahedron_refinements/5-edges/edge_12-20-23-30-31_refined/12-20-23-30-31.png -text
doc/tetrahedron_refinements/5-edges/edge_12-20-23-30-31_refined/12-20-23-30-31.pvsm -text
doc/tetrahedron_refinements/5-edges/edge_12-20-23-30-31_refined/12-20-23-30-31.txt -text
doc/tetrahedron_refinements/5-edges/edge_12-20-23-30-31_refined/12-20-23-30-31.vtk -text
doc/tetrahedron_refinements/5-edges/edge_12-20-23-30-31_refined/12-20-23-30-31_small.png -text
doc/tetrahedron_refinements/6-edges/edge_01-12-20-23-30-31_refined/01-12-20-23-30-31.aux -text
doc/tetrahedron_refinements/6-edges/edge_01-12-20-23-30-31_refined/01-12-20-23-30-31.log -text
doc/tetrahedron_refinements/6-edges/edge_01-12-20-23-30-31_refined/01-12-20-23-30-31.pdf -text
doc/tetrahedron_refinements/6-edges/edge_01-12-20-23-30-31_refined/01-12-20-23-30-31.png -text
doc/tetrahedron_refinements/6-edges/edge_01-12-20-23-30-31_refined/01-12-20-23-30-31.pvsm -text
doc/tetrahedron_refinements/6-edges/edge_01-12-20-23-30-31_refined/01-12-20-23-30-31.tex -text
doc/tetrahedron_refinements/6-edges/edge_01-12-20-23-30-31_refined/01-12-20-23-30-31.tex.orig -text
doc/tetrahedron_refinements/6-edges/edge_01-12-20-23-30-31_refined/01-12-20-23-30-31.txt -text
doc/tetrahedron_refinements/6-edges/edge_01-12-20-23-30-31_refined/01-12-20-23-30-31.vtk -text
doc/tetrahedron_refinements/6-edges/edge_01-12-20-23-30-31_refined/01-12-20-23-30-31_small.png -text
doc/tetrahedron_refinements/6-edges/edge_01-12-20-23-30-31_refined/buildlatex.bash -text
doc/tetrahedron_refinements/6-edges/edge_01-12-20-23-30-31_refined/output_file.jpg -text
doc/tetrahedron_refinements/README -text
doc/tetrahedron_refinements/text2vtk.py -text
examples/simplef.F90 -text
examples/stridedf.F90 -text
examples/write_setview.c -text
/install-sh -text
/license.txt -text
src/C++/H5Fed.cc -text
src/C++/H5Fed.hh -text
src/C++/Makefile.am -text
src/C/H5.c -text
src/C/H5Block.c -text
src/C/H5Block_readwrite.c -text
src/C/H5Part.c -text
src/C/H5_attachments.c -text
src/C/H5_attribs.c -text
src/C/Makefile.am -text
src/C/generate-h5b-readwrite.py -text
src/Fortran/H5.f90 -text
src/Fortran/H5Block.f90 -text
src/Fortran/H5Block_F.c -text
src/Fortran/H5Block_readwrite.f90 -text
src/Fortran/H5Block_readwrite_F.c -text
src/Fortran/H5Part.f90 -text
src/Fortran/H5Part_F.c -text
src/Fortran/H5_F.c -text
src/Fortran/H5_attribs.f90 -text
src/Fortran/H5_attribs_F.c -text
src/Fortran/Makefile.am -text
src/Fortran/TestUnderscore.f -text
src/Fortran/TestUnderscoreC.c -text
src/Fortran/generate-h5-attribs-f.py -text
/missing -text
/rules.make -text
src/H5Block.c -text
src/H5Block.f90 -text
src/H5Block.h -text
src/H5BlockErrors.h -text
src/H5BlockF.c -text
src/H5BlockPrivate.h -text
src/H5BlockReadWrite.c -text
src/H5BlockReadWrite.f90 -text
src/H5BlockReadWrite.h -text
src/H5BlockReadWriteF.c -text
src/H5BlockTypes.h -text
src/H5MultiBlock.c -text
src/H5MultiBlock.h -text
src/H5MultiBlockErrors.h -text
src/H5MultiBlockPrivate.h -text
src/H5MultiBlockReadWrite.c -text
src/H5MultiBlockReadWrite.h -text
src/H5MultiBlockTypes.h -text
src/H5Part.c -text
src/H5Part.f90 -text
src/H5Part.h -text
src/H5PartAttrib.c -text
src/H5PartAttrib.f90 -text
src/H5PartAttrib.h -text
src/H5PartAttribF.c -text
src/H5PartErrors.h -text
src/H5PartF.c -text
src/H5PartPrivate.h -text
src/H5PartTypes.h -text
src/Makefile.am -text
src/h5core/Makefile.am -text
src/h5core/h5_attach.c -text
src/h5core/h5_attribs.c -text
src/h5core/h5_attribs_private.h -text
src/h5core/h5_core_private.h -text
src/h5core/h5_errorhandling.c -text
src/h5core/h5_errorhandling_private.h -text
src/h5core/h5_fcmp.c -text
src/h5core/h5_fcmp_private.h -text
src/h5core/h5_hdf5.c -text
src/h5core/h5_hdf5_private.h -text
src/h5core/h5_hsearch.c -text
src/h5core/h5_hsearch_private.h -text
src/h5core/h5_lustre.c -text
src/h5core/h5_lustre_private.h -text
src/h5core/h5_maps.c -text
src/h5core/h5_maps_private.h -text
src/h5core/h5_model.c -text
src/h5core/h5_mpi.c -text
src/h5core/h5_mpi_private.h -text
src/h5core/h5_openclose.c -text
src/h5core/h5_qsort.c -text
src/h5core/h5_qsort_private.h -text
src/h5core/h5_qsort_r.c -text
src/h5core/h5_readwrite.c -text
src/h5core/h5_readwrite_private.h -text
src/h5core/h5_syscall.c -text
src/h5core/h5_syscall_private.h -text
src/h5core/h5_types_private.h -text
src/h5core/h5_va_macros.h -text
src/h5core/h5b_attribs.c -text
src/h5core/h5b_errorhandling_private.h -text
src/h5core/h5b_model.c -text
src/h5core/h5b_model_private.h -text
src/h5core/h5b_readwrite.c -text
src/h5core/h5b_types_private.h -text
src/h5core/h5t_access_private.h -text
src/h5core/h5t_access_tetm.c -text
src/h5core/h5t_access_trim.c -text
src/h5core/h5t_adjacencies.c -text
src/h5core/h5t_adjacencies_private.h -text
src/h5core/h5t_adjacencies_tetm.c -text
src/h5core/h5t_adjacencies_trim.c -text
src/h5core/h5t_core_private.h -text
src/h5core/h5t_errorhandling_private.h -text
src/h5core/h5t_hsearch.c -text
src/h5core/h5t_hsearch_private.h -text
src/h5core/h5t_inquiry.c -text
src/h5core/h5t_map.c -text
src/h5core/h5t_map_private.h -text
src/h5core/h5t_model.c -text
src/h5core/h5t_model_private.h -text
src/h5core/h5t_model_tetm.c -text
src/h5core/h5t_model_trim.c -text
src/h5core/h5t_readwrite.c -text
src/h5core/h5t_readwrite_private.h -text
src/h5core/h5t_readwrite_tetm.c -text
src/h5core/h5t_readwrite_trim.c -text
src/h5core/h5t_ref_elements.c -text
src/h5core/h5t_ref_elements_private.h -text
src/h5core/h5t_retrieve.c -text
src/h5core/h5t_retrieve_private.h -text
src/h5core/h5t_retrieve_tetm.c -text
src/h5core/h5t_retrieve_trim.c -text
src/h5core/h5t_store.c -text
src/h5core/h5t_store_private.h -text
src/h5core/h5t_store_tetm.c -text
src/h5core/h5t_store_trim.c -text
src/h5core/h5t_store_trim_private.h -text
src/h5core/h5t_tags.c -text
src/h5core/h5t_tags_private.h -text
src/h5core/h5t_types_private.h -text
src/h5core/h5u_errorhandling_private.h -text
src/h5core/h5u_model.c -text
src/h5core/h5u_readwrite.c -text
src/h5core/h5u_types_private.h -text
src/include/H5.h -text
src/include/H5Block.h -text
src/include/H5Block_readwrite.h -text
src/include/H5Fed.h -text
src/include/H5Fed_adjacency.h -text
src/include/H5Fed_inquiry.h -text
src/include/H5Fed_retrieve.h -text
src/include/H5Fed_store.h -text
src/include/H5Fed_tags.h -text
src/include/H5Part.h -text
src/include/H5_attachments.h -text
src/include/H5_attribs.h -text
src/include/H5hut.h -text
src/include/grephdr -text
src/include/h5core/h5_attach.h -text
src/include/h5core/h5_attribs.h -text
src/include/h5core/h5_core.h -text
src/include/h5core/h5_errno.h -text
src/include/h5core/h5_errorhandling.h -text
src/include/h5core/h5_hdf5.h -text
src/include/h5core/h5_maps.h -text
src/include/h5core/h5_openclose.h -text
src/include/h5core/h5_readwrite.h -text
src/include/h5core/h5_syscall.h -text
src/include/h5core/h5_types.h -text
src/include/h5core/h5b_attribs.h -text
src/include/h5core/h5b_model.h -text
src/include/h5core/h5b_readwrite.h -text
src/include/h5core/h5t_adjacencies.h -text
src/include/h5core/h5t_core.h -text
src/include/h5core/h5t_inquiry.h -text
src/include/h5core/h5t_map.h -text
src/include/h5core/h5t_model.h -text
src/include/h5core/h5t_readwrite.h -text
src/include/h5core/h5t_ref_elements.h -text
src/include/h5core/h5t_retrieve.h -text
src/include/h5core/h5t_storemesh.h -text
src/include/h5core/h5t_tags.h -text
src/include/h5core/h5u_model.h -text
src/include/h5core/h5u_readwrite.h -text
test/H5Block/BlockTestSpecs.txt -text
test/H5Block/H5BlockDissolveGhosts.c -text
test/H5Block/H5BlockParTestScalarField.c -text
test/H5Block/H5BlockParTestScalarField.pbs -text
test/H5Block/H5BlockParTestScalarFieldF.f90 -text
test/H5Block/H5BlockTestAttributes.c -text
test/H5Block/H5BlockTestAttributesF.f90 -text
test/H5Block/Makefile.am -text
test/H5Fed/Makefile.am -text
test/H5Fed/map_tet2globalid.c -text
test/H5Fed/map_triangle2globalid.c -text
test/H5Fed/tetmesh_adjacencies.c -text
test/H5Fed/tetmesh_read.c -text
test/H5Fed/tetmesh_read_tags.c -text
test/H5Fed/tetmesh_write.c -text
test/H5Fed/tetmesh_write1.c -text
test/H5Fed/tetmesh_write2.c -text
test/H5Fed/tetmesh_write_tags.c -text
test/H5Fed/trimesh_2gnuplot.c -text
test/H5Fed/trimesh_adjacencies.c -text
test/H5Fed/trimesh_read.c -text
test/H5Fed/trimesh_write.c -text
test/H5Fed/trimesh_write_dunetest.c -text
test/H5Fed/write_boundary.c -text
test/H5Part/Bench.c -text
test/H5Part/H5ParallelTest.cc -text
test/H5Part/H5PartAndreasTest.cc -text
test/H5Part/H5PartTest.cc -text
test/H5Part/H5PartTestParallel.cc -text
test/H5Part/H5test.cc -text
test/H5Part/H5testF.f -text
test/H5Part/H5testFpar.f90 -text
test/H5Part/Makefile.am -text
src/TestUnderscore.f -text
src/TestUnderscoreC.c -text
src/generate-attr.py -text
src/generate-h5bl-readwrite.py -text
src/generate-h5multi-readwrite.py -text
test/Bench.c -text
test/BlockTestSpecs.txt -text
test/H5BlockDissolveGhosts.c -text
test/H5BlockParTestScalarField.c -text
test/H5BlockParTestScalarField.pbs -text
test/H5BlockParTestScalarFieldF.F90 -text
test/H5BlockTestAttributes.c -text
test/H5BlockTestAttributesF.F90 -text
test/H5ParallelTest.cc -text
test/H5PartAndreasTest.cc -text
test/H5PartTest.cc -text
test/H5PartTestParallel.cc -text
test/H5test.cc -text
test/H5testF.f -text
test/H5testFpar.F90 -text
test/Makefile.am -text
test/h5_attach_test.c -text
test/h5b_read.c -text
test/h5b_test.c -text
test/h5b_write.c -text
test/h5u_read.c -text
test/h5u_test.c -text
test/h5u_write.c -text
test/params.h -text
test/read.c -text
test/test.c -text
test/testf.F90 -text
test/testframe.c -text
test/testframe.h -text
tools/H5PartMerge/AUTHORS -text
tools/H5PartMerge/COPYING -text
tools/H5PartMerge/ChangeLog -text
tools/H5PartMerge/INSTALL -text
tools/H5PartMerge/NEWS -text
tools/H5PartMerge/README -text
tools/H5PartMerge/autogen.sh -text
tools/H5PartMerge/configure.ac -text
tools/H5PartMerge/makefile.am -text
tools/H5PartMerge/src/H5merge.cpp -text
tools/H5PartMerge/src/optparse.cpp -text
tools/H5PartMerge/src/optparse.hh -text
test/write.c -text
tools/H5BlockBench.c -text
tools/H5PartBench.c -text
tools/Makefile.am -text
tools/README -text
tools/h5PartDcToVtk.cc -text
tools/h5PartSurfaceToVtk.cc -text
tools/h5hutcc.in -text
tools/h5pAttrib.cc -text
tools/h5pToGNUplot.cc -text
tools/homdynToH5p.cc -text
visit_plugins/databases/H5Part/.depend -text
visit_plugins/databases/H5Part/Makefile -text
visit_plugins/databases/H5Part/README.txt -text
visit_plugins/databases/H5Part/avth5partFileFormat.C -text
visit_plugins/databases/H5Part/avth5partFileFormat.h -text
visit_plugins/databases/H5Part/h5part.xml -text
visit_plugins/databases/H5Part/h5partCommonPluginInfo.C -text
visit_plugins/databases/H5Part/h5partEnginePluginInfo.C -text
visit_plugins/databases/H5Part/h5partMDServerPluginInfo.C -text
visit_plugins/databases/H5Part/h5partPluginInfo.C -text
visit_plugins/databases/H5Part/h5partPluginInfo.h -text
visit_plugins/operators/BinnerFilter/.depend -text
visit_plugins/operators/BinnerFilter/Binner.xml -text
visit_plugins/operators/BinnerFilter/BinnerCommonPluginInfo.C -text
visit_plugins/operators/BinnerFilter/BinnerEnginePluginInfo.C -text
visit_plugins/operators/BinnerFilter/BinnerFilter.C -text
visit_plugins/operators/BinnerFilter/BinnerFilter.h -text
visit_plugins/operators/BinnerFilter/BinnerFilter.java -text
visit_plugins/operators/BinnerFilter/BinnerGUIPluginInfo.C -text
visit_plugins/operators/BinnerFilter/BinnerMakefile -text
visit_plugins/operators/BinnerFilter/BinnerPluginInfo.C -text
visit_plugins/operators/BinnerFilter/BinnerPluginInfo.h -text
visit_plugins/operators/BinnerFilter/BinnerScriptingPluginInfo.C -text
visit_plugins/operators/BinnerFilter/BinnerViewerPluginInfo.C -text
visit_plugins/operators/BinnerFilter/Binnerreplace.txt -text
visit_plugins/operators/BinnerFilter/Makefile -text
visit_plugins/operators/BinnerFilter/PyBinner.C -text
visit_plugins/operators/BinnerFilter/PyBinner.h -text
visit_plugins/operators/BinnerFilter/QvisBinnerWindow.C -text
visit_plugins/operators/BinnerFilter/QvisBinnerWindow.h -text
visit_plugins/operators/BinnerFilter/avtBinnerFilter.C -text
visit_plugins/operators/BinnerFilter/avtBinnerFilter.h -text
visit_plugins/operators/BinnerFilter/icon.xpm -text
visit_plugins/operators/RandomSample/.depend -text
visit_plugins/operators/RandomSample/H5PartRandomSampleAttributes.C -text
visit_plugins/operators/RandomSample/H5PartRandomSampleAttributes.h -text
visit_plugins/operators/RandomSample/H5PartRandomSampleAttributes.java -text
visit_plugins/operators/RandomSample/H5PartRandomSampleCommonPluginInfo.C -text
visit_plugins/operators/RandomSample/H5PartRandomSampleEnginePluginInfo.C -text
visit_plugins/operators/RandomSample/H5PartRandomSampleGUIPluginInfo.C -text
visit_plugins/operators/RandomSample/H5PartRandomSamplePluginInfo.C -text
visit_plugins/operators/RandomSample/H5PartRandomSamplePluginInfo.h -text
visit_plugins/operators/RandomSample/H5PartRandomSampleScriptingPluginInfo.C -text
visit_plugins/operators/RandomSample/H5PartRandomSampleViewerPluginInfo.C -text
visit_plugins/operators/RandomSample/Makefile -text
visit_plugins/operators/RandomSample/PyH5PartRandomSampleAttributes.C -text
visit_plugins/operators/RandomSample/PyH5PartRandomSampleAttributes.h -text
visit_plugins/operators/RandomSample/QvisH5PartRandomSampleWindow.C -text
visit_plugins/operators/RandomSample/QvisH5PartRandomSampleWindow.h -text
visit_plugins/operators/RandomSample/RandomSample.xml -text
visit_plugins/operators/RandomSample/avtH5PartRandomSampleFilter.C -text
visit_plugins/operators/RandomSample/avtH5PartRandomSampleFilter.h -text
visit_plugins/operators/RandomSample/icon.xpm -text
.gitignore
-82
View File
@@ -1,82 +0,0 @@
/H5hut
/INSTALL
/Makefile
/Makefile.in
/aclocal.m4
/autom4te.cache
/build
/config.guess
/config.h
/config.h.in
/config.log
/config.status
/config.sub
/configure
/depcomp
doc/Makefile
doc/Makefile.in
/install-sh
/libtool
/ltmain.sh
/m4
/missing
src/.deps
src/C++/Makefile
src/C++/Makefile.in
src/C/.deps
src/C/Makefile
src/C/Makefile.in
src/C/libH5hutC.a
src/Fortran/.deps
src/Fortran/Makefile
src/Fortran/Makefile.in
src/Makefile
src/Makefile.in
src/h5core/.deps
src/h5core/Makefile
src/h5core/Makefile.in
src/h5core/libH5hut.a
src/include/H5hutF.h
src/lib
/stamp-h1
/svn-prop.tmp
test/.deps
test/H5Block/H5BlockParTestScalarField
test/H5Block/H5BlockTestAttributes
test/H5Block/Makefile
test/H5Block/Makefile.in
test/H5Fed/.deps
test/H5Fed/Makefile
test/H5Fed/Makefile.in
test/H5Fed/large_tet.h5
test/H5Fed/simple_tet.h5
test/H5Fed/simple_triangle.h5
test/H5Fed/small_tet.h5
test/H5Fed/tetmesh_adjacencies
test/H5Fed/tetmesh_read
test/H5Fed/tetmesh_read_tags
test/H5Fed/tetmesh_write
test/H5Fed/tetmesh_write2
test/H5Fed/tetmesh_write_tags
test/H5Fed/trimesh_adjacencies
test/H5Fed/trimesh_read
test/H5Fed/trimesh_write
test/H5Fed/trimesh_write_dunetest
test/H5Part/Bench
test/H5Part/H5PartAndreasTest
test/H5Part/H5PartTestP
test/H5Part/H5test
test/H5Part/Makefile
test/H5Part/Makefile.in
test/Makefile
test/Makefile.in
test/h5_attach.h5
test/h5_attach_test
test/h5b_test
test/h5u_test
tools/.deps
tools/Makefile
tools/Makefile.in
tools/h5PartDcToVtk
tools/h5PartSurfaceToVtk
tools/h5hutcc
AUTHORS
+1
View File
@@ -6,5 +6,6 @@ Benedikt Oswald (PSI)
Wes Bethel (NERSC/LBNL)
John Shalf (NERSC/LBNL)
Cristina Siegerist (NERSC/LBNL)
Mark Howison (NERSC/LBNL)
Please use h5part@lists.psi.ch for communicaion.
COPYING
+1 -1
View File
@@ -1,6 +1,6 @@
*** Copyright Notice ***
H5hut Copyright (c) 2006-2010, The Regents of the University of California,
H5Part Copyright (c) 2006-2009, The Regents of the University of California,
through Lawrence Berkeley National Laboratory (subject to receipt of any
required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
Institut (Switzerland). All rights reserved.
GNUmakefile.orig
Executable
+133
View File
@@ -0,0 +1,133 @@
UNAME := $(shell uname | perl -pe 's/(sn\d\d\d\d|jsimpson)/UNICOS\/mk/')
# for host specific options
HOST := $(shell hostname)
# for processor-specific options
ifeq ($(UNAME), Linux)
PROC := $(shell uname -p)
endif
CXX = c++
CC = cc
H5HOME = /usr/local/hdf5
CFLAGS = -g -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# MacOS-X Serial
ifeq ($(UNAME), Darwin)
ifeq ($(PARALLEL), yes)
CXX = g++
CC = mpicc
H5HOME = /usr/local
CFLAGS = -O -g -I$(H5HOME)/include -DPARALLEL_IO
LDFLAGS = -L$(H5HOME)/lib -lmpich -lpmpich -lhdf5 -lz -lm
else
CXX = c++
CC = cc
F90 = xlf
H5HOME = /usr/local
CFLAGS = -O -g -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
endif
endif
# SGI MIPS/Irix
ifeq ($(UNAME), IRIX64)
CXX = CC
CC = cc
F90 = f90
ifeq ($(PARALLEL), yes)
H5HOME = $(HDF5_DIR)
CFLAGS = -64 -O3 -I$(H5HOME)/include -DPARALLEL_IO
LDFLAGS = -64 -O3 -L$(H5HOME)/lib -lhdf5 -lz -lmpi -lm
else
H5HOME = /usr/local
CFLAGS = -O3 -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
endif
endif
# AIX/SP-2 Parallel/serial : Seaborg
ifeq ($(UNAME), AIX)
ifeq ($(PARALLEL), yes) # parallel
CXX = mpCC_r
CC = mpxlc_r
# H5HOME = /usr/common/usg/hdf5_64/1.4.5-post2/parallel
H5HOME = /usr/common/usg/hdf5_64/1.6.1/parallel
# /usr/common/usg/hdf5/1.4.4/parallel
H4HOME = /usr/common/usg/hdf/default
OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
CFLAGS = -q64 -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lsz -lm
else # serial
CXX = xlC
CC = xlc
H5HOME = /usr/common/usg/hdf5/1.4.4/serial
H4HOME = /usr/common/usg/hdf/default
OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
CFLAGS = -g -bmaxdata:800000000 -bmaxstack:256000000 -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lm
endif
endif
# Linux
ifeq ($(UNAME), Linux)
# if this machine is NERSC/Davinci Altix system
ifeq ($(PROC), ia64)
CC = icc
CXX = icc
ifeq ($(PARALLEL), yes)
# IA64 Linux Parallel
ifeq ($(HOST), davinci)
H5HOME = $(HDF5_PAR)
MPILIB = -lmpi
else
H5HOME = /usr/local
HDF5_PAR_LIB = -L$(H5HOME)/lib -lhdf5 -lz -lm
HDF5_PAR_INCLUDE = -I$(H5HOME)/include
MPIHOME = /usr/local
MPILIB = -lmpich
endif # HOST
CFLAGS = -O3 -DPARALLEL_IO -DH5_HAVE_PARALLEL $(HDF5_PAR_INCLUDE)
LDFLAGS = $(HDF5_PAR_LIB) $(MPILIB)
else # IA64 Linux Serial
CFLAGS = -O3 $(HDF5_INCLUDE)
LDFLAGS = $(HDF5_LIB) -lm
endif # PARALLEL
# else this is standard IA32 linux
else
ifeq ($(PARALLEL), yes)
# Linux Parallel
CC = gcc
CXX = g++
H5HOME = /usr/local
MPIHOME = /usr/local
CFLAGS = -O -g -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lmpich -lrt -lz -lm
else # Linux Serial
CXX = g++
CC = gcc
CFLAGS = -O -g -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
endif # !PARALLEL
endif # PROC!ia64
endif # !Linux
ifeq ($(PARALLEL), yes) #parallel
ifdef F90
all: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest H5PartF.o
else
all: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest
endif
else
ifdef F90
all: H5PartTest H5PartTest.o H5Part.o H5PartF.o
else
all: H5PartTest H5PartTest.o H5Part.o
endif
endif
include rules.make
INSTALL
+437
View File
@@ -0,0 +1,437 @@
==============================================================================
README file for H5Part configure
==============================================================================
+ 0. HDF5 library
-----------------
Make sure you have a working version of the HDF5 library installed. If you plan
to use parallel I/O you need to use a parallel HDF5 version. Source files and
installation instructions are available from the HDF5 website:
http://www.hdfgroup.org/HDF5/
+ 1. Quick start (If you feel lucky...)
----------------------------------------
For many platforms, where compilers are installed in the "default" location
and all the environment variables are set correctly, it should be sufficient
to type:
./configure [OPTIONS] && make [install]
to have the libraries and test program compiled.
+ 2. Configure line options
----------------------------
To view a full list of configure option, use:
./configure --help
(1) Enable options
--enable-fortran
--enable-parallel
--enable-tools
--enable-python
--enable-64 (only for AIX and Irix)
(2) Setting compilers related variables manually
To assign environment variables (e.g., CC, CFLAGS...), specify them as
VAR=VALUE before running configure. For example, if you are using the bash
shell, you might type:
export CC=gcc
to set the default C compiler. See below for descriptions of some useful
variables.
Compiler environment variables:
CC C compiler command
CXX C++ compiler command
FC Fortran compiler command
MPICC MPI-enabled C compiler command
MPICXX MPI-enabled C++ compiler command
MPIFC MPI-enabled Fortran compiler command
CFLAGS flags to append when invoking the C compiler
Library environment variables:
LDFLAGS flags to append when invoking the linker
(3) Setting prefix for installation manually (by default, the package will
install itself in the 'build' subdirectory of your source directory)
--prefix=PREFIX install files in PREFIX
+ 3. Platform specific settings for compiling libraries & test programs
------------------------------------------------------------------------
Building
make : builds the libraries and test programs
make install: builds and installs
make clean : removes extraneous object files
make distclean : returns configuration to unconfigured state
As tested on hosts:
(0) Franklin <franklin.nersc.gov> (CNL - Cray XT4)
--------------------------------------------------
module add hdf5_par
module add zlib
module add szip
export CC=cc CXX=CC FC=ftn MPICC=cc MPICXX=CC MPIFC=ftn
export LDFLAGS=$HDF5
./configure --enable-fortran --enable-parallel --with-hdf5path=$HDF5_PAR_DIR --with-mpiposix
make install
(1) Davinci <davinci.nersc.gov> (Linux"SUSE"-ia64)
---------------------------------------------------
FIRST THING FIRST!! Type:
module load intel
to have the proper compilers set up for use.
module load hdf5_par
[NOTE: module load hdf5 does not work at this moment.
Possible installation error of HDF5 on Davinci.]
Brief profile:
CC = icc
CXX = icc
FC = ifort
MPICC = icc
MPICXX = icc
MPIFC = ifort
If default doesn't work, try:
For C shell:
env CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure && make install
For Korn or Bourne shell:
CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure --enable-fortran --enable-parallel && make install
For Korn or Bourne shell:
CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure --enable-fortran --enable-parallel && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(ii) Parallel test
run:
mpirun 2 H5testFpar
mpirun 2 H5PartTestP
NOTE: Number 2 above is a arbitrary number that indicates the number of processes.
(2) Jacquard <jacquard.nersc.gov> (Linux"SUSE"-x86_64)
-------------------------------------------------------
Brief profile:
CC = pathcc
CXX = pathCC
FC = pathf90
MPICC = mpicc
MPICXX = mpicxx
MPIFC = mpif90
If default doesn't work, try:
For C shell:
env CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure && make install
For Korn or Bourne shell:
CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure --enable-fortran --enable-parallel && make install
For Korn or Bourne shell:
CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure --enable-fortran --enable-parallel && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(ii) Parallel test
In Jacquard, we need a script to run parallel programs, since Jacquard does not support interactive parallel processing. Instead, we need to submit the task to a queue. A sample script (run_H5testFpar.scr) may look like below:
+++++++++++++++++++++++++++++++++++++++
#!/bin/csh
#PBS -l nodes=1:ppn=2,walltime=00:05:00
#PBS -N H5testFpar
#PBS -o H5testFpar.out
#PBS -e H5testFpar.err
#PBS -q debug
#PBS -A mpccc
#PBS -V
setenv PBS_OWORKDIR /home/H5Part/test
cd $PBS_O_WORKDIR
mpirun -np 2 ./H5testFpar
+++++++++++++++++++++++++++++++++++++++
Then, we need to submit the task to a queue by running:
qsub run_H5testFpar.scr
After processed, the result will appear in H5testFpar.out, and error messages will appear in H5testFpar.err.
(3) Bassi <bassi.nersc.ogv> (AIX5.3.0.0-Power 3)
-------------------------------------------------
FIRST THING FIRST!! Type:
module load gcc
to have the proper compilers set up for use.
Brief profile:
CC = cc_r
CXX = cc_r
FC = xlf_r
MPICC = mpcc_r
MPICXX = mpcc_r
MPIFC = mpxlf_r
If default doesn't work, try:
For C shell:
env CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure && make install
For Korn or Bourne shell:
CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure --enable-fortran --enable-parallel && make install
For Korn or Bourne shell:
CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure --enable-fortran --enable-parallel && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(ii) Parallel test
run:
unsetenv MP_SINGLE_THREAD
poe ./H5PartTestP -procs 2 -nodes 1
poe ./H5testFpar -procs 2 -nodes 1
For more details on how to run parallel programs on Bassi, go to:
http://www.nersc.gov/nusers/resources/bassi/running_jobs/
(4) Starsky <starsky.lbl.gov> (Darwin8.5.0-PowerPC)
----------------------------------------------------
FIRST THING FIRST!! Set environment variables: (in tcsh)
setenv LD_LIBRARY_PATH /usr/local/g95/lib/gcc-lib/powerpc-apple-darwin8.5.0/4.0.3/
setenv PATH ${PATH}:/usr/local/g95/bin
NOTE: This environment variable setting is specifit to Starsky. It is to make configure find the fortran compiler.
Brief profile:
CC = gcc
CXX = g++
FC = g95
If default doesn't work, try:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(5) Linux AMD64 Visualization group workstations (Linux"SUSE"-x86_64)
---------------------------------------------------------
Brief profile:
CC = gcc
CXX = g++
FC = g95
If default doesn't work, try:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(6) Cray XT3 @ CSCS gele
1) modules/3.1.6 9) PrgEnv-pgi/1.4.26 17) xt-lustre-ss/1.4.26
2) MySQL/4.0.26 10) xt-pbs/5.3.4 18) Base-opts/1.4.26
3) acml/3.0 11) xt-service/1.4.26 19) subversion/1.3.2
4) pgi/6.1.4 12) xt-libc/1.4.26 20) zlib/1.2.3
5) totalview/7.2.0 13) xt-os/1.4.26 21) szip/2.0
6) xt-libsci/1.4.26 14) xt-catamount/1.4.26 22) hdf5/1.6.5
7) xt-mpt/1.4.26 15) xt-boot/1.4.26
8) xt-pe/1.4.26 16) xt-crms/1.4.26
CFLAGS="-I$H5HOME/include -DF77_SINGLE_UNDERSCORE" LDFLAGS="-L$H5HOME/lib -L$ZHOME/lib" ./configure --enable-parallel --enable-fortran
(7) merlin00 / merlin3
Currently Loaded Modulefiles:
1) hdf5/hdf5-1.6.5 2) root/root-5.10.00 3) mpi/mpich2-1.0.3-pgi-6.1 4) pgi/pgi_64-6.1
FC=mpif90 ./configure --enable-parallel --enable-fortran
==============================================================================
+ 4. Trouble shooting (Things to check for...)
--------------------------------------------
(0) Have you set the LD_LIBRARY_PATH?
---Some systems require the user to manually set the environment variable, LD_LIBRARY_PATH. To do so:
set the environment variable HDF5ROOT or PHDF5ROOT to point to your installation of HDF5 (serial and/or parallel respectively).
For Korn or Bourne shell:
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HDF5ROOT}/lib;export LD_LIBRARY_PATH
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:{PHDF5ROOT}/lib;export LD_LIBRARY_PATH
For C shell:
setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${HDF5ROOT}/lib
setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${PHDF5ROOT}/lib
Note that the values of HDF5ROOT & PHDF5ROOT will be in the "summary" section when you run configure.
Not properly set LD_LIBRARY_PATH value may result in a runtime error:
./H5PartTest: error while loading shared libraries: libhdf5.so.0: cannot open shared object file: No such file or directory
(1) Are the compilers set correctly?
---Check with: which COMPILER
(2) Have you installed HDF5?
---You can get it at: http://vis.lbl.gov/Research/AcceleratorSAPP/index.html
(3) Have you loaded the proper modules?
---It is necessary in Davinci & Bassi, and configure && make install may not work without it.
Makefile.am
+5 -1
View File
@@ -1,10 +1,14 @@
ACLOCAL_AMFLAGS = -I m4
# Trial by Antino Kim
# Top level Makefile.am
SUBDIRS = \
doc \
src \
test \
tools
EXTRA_DIST = configure-crayxt
MAINTAINERCLEANFILES = \
config.h \
config.log \
Makefile.orig
Executable
+59
View File
@@ -0,0 +1,59 @@
# This is a very rudimentary multiarchitecture makefile
# You need to uncomment the default block of make variables you need
# Some key things to watch for are the following defines
# -DREGRESSIONTEST : enables a main(){} inside of
# the H5Part.cc file that does simple regression testing.
# -DPARALLEL_IO : If you want to use parallel HDF5, you have to
# enable this. Otherwise, you get only the serial
# implementation of the library.
# MacOS-X Serial
#CXX = c++
#CC = cc
#F90 = xlf
#H5HOME = /usr/local
#CFLAGS = -O -g -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# AIX/SP-2 Parallel : Seaborg
#CXX = mpCC_r
#CC = mpcc_r
#F90 = mpxlf
#H5HOME = /usr/common/usg/hdf5/1.4.4/parallel
#H4HOME = /usr/common/usg/hdf/default
#OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
#CFLAGS = -g -bmaxdata:800000000 -bmaxstack:256000000 -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lm
# Linux Serial
#CXX = g++
#CC = gcc
#F90 = g77 # or could be pgif90
#CFLAGS = -O -g -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# Linux Jacquard
CC = mpicc
CXX = mpicxx
F90 = mpif90
H5HOME = /usr/common/usg/hdf5/1.6.3/parallel
CFLAGS = -O2 -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# Linux Parallel
#CC = gcc
#CXX = g++
#F90 = g77
#H5HOME = /usr/local
# /usr/common/usg/hdf5/1.6.3/parallel
#MPIHOME = /usr/local
#CFLAGS = -O -g -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lmpich -lrt -lz -lm
all: H5PartTest H5PartTest.o H5Part.o
parallel: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest # parallel regression tests
fortran: H5PartF.o # fortran bindings
include rules.make
NEWS
+320
View File
@@ -0,0 +1,320 @@
#### H5PART 1.6.1 ############################################################
Chunking in the H5Part API
--------------------------
There is now an H5Part equivalent H5PartSetChunkSize to the existing
H5BlockDefine3DChunkDims call. Both of these calls enable the chunking
mechanism in the underlying HDF5 layer. Chunking is used in combination
with the aligned open calls to pad datasets to alignment multiples
on disk.
All Steps Available on Write
----------------------------
Previously, existing steps in a file were only accessible in read-only mode.
Now, all steps are available in all modes, including write-truncate and
write-append. Thus, it is now possible to overwrite existing data in write
mode. To help alert the user to this possibility, a warning is issued every
time an existing dataset is written to. Warnings can be printed by setting
the verbosity to H5PART_VERB_WARN or higher.
New Throttling Routine
----------------------
Previously, a throttle factor of N meant that for P processors, the total
number of P writes were divided into N batches of P/N writes.
To better accommodate round-robin lustre striping, the new policy is to
execute P/N batches of N writes. Thus, matching N to the number of stripes
results in the desirable 1-1 matching of writers to stripes.
Other Fixes
-----------
* The configure script should correctly detect PGI compilers now.
* There was a small memory leak in the Fortran file open calls.
* There was a compile error with HDF5 1.6.x due to a missing assignment.
#### H5PART 1.6 ##############################################################
Updated Documentation
---------------------
The Fortran API has been added to the doxygen documentation. Most entries have
a reference to their respective C API call.
Regression Test Suite
---------------------
The test subdirectory has been reorganized to include a systematic series
of regression tests of common use cases for the API. The goal is to have both
complete coverage of the API (every call is exercised) and testing of some
unlikely or unsuspected values and cases.
Currently, the C test covers the entire H5Part API and the Fortran test is
still in development.
Benchmark Utilities
-------------------
Two benchmarking utilities, H5PartBench and H5BlockBench, have been added to
the tools collection. Both require the parallel library and have functionality
and syntax similar to the IOR benchmark:
http://sourceforge.net/projects/ior-sio/
File Mode Flags
---------------
Previously, the only flags used were H5PART_READ, H5PART_WRITE, and
H5PART_APPEND, and these were mutually exclusive. Additional flags have been
added to select the underlying virtual file driver (VFD) that HDF5 uses in
parallel mode and to accommodate the lustre filesystem:
H5PART_VFD_MPIPOSIX (use the MPI-POSIX driver, which bypasses MPI-IO)
H5PART_VFD_MPIIO_IND (use MPI-IO in independent mode)
H5PART_FS_LUSTRE (activate H5P tunings for the lustre stripe size)
These flags can be specified using the typical bitwise OR method, e.g.
char flag = H5PART_WRITE | H5PART_VFD_MPIPOSIX | H5PART_FS_LUSTRE;
will select write mode with these two additional options.
The parallel library now defaults to using the MPI-IO collective mode driver
(previously it used independent mode). The collective buffering algorithm in
the Cray XT4/5 environment has been substantially improved in the last year,
and defaulting to collective mode allows us to take advantage of these
improvements automatically.
There are also new open calls H5PartOpenAlign and H5PartOpenParallelAlign that
take an additional 'alignment' value. This value is passed to HDF5 and used to
pad out objects so that they align to filesystem boundaries. For instance, it
would make sense to use the stripe size as the alignment value when writing to
a lustre filesystem.
Unified 'View' Model
--------------------
Views are now supported in both read and write mode (previously only supported
in read mode). It is possible to specify non-sensical views: you could for
instance specify a read view that is larger than the dataset on disk. Or you
could create a write view that is larger than the data in memory. In those
cases, you will encounter an error when you try to perform a read or write
operation on a dataset.
There are two new methods for selecting views. H5PartSetNumParticlesStrided
selects a view with $n$ particles per processor, but such that the data in
memory is expected to have a 'stride' factor. For instance, if you have
particle data with fields $x$ and $y$ and a single array with entries
$x1,y1,x2,y2...$, then the stride factor is 2. Striding works for both reads
and writes and only affects the view of memory: individual fields are still
stored as individual arrays on disk.
The second new method is H5PartSetViewIndices, which allows for point
selections of datasets. You can pass a list of indices for the points you
want to select. This is useful, for instance, when interfacing with FastBit
to perform queries that select a small subset of non-contiguous particles.
Because views are now supported on write, it is possible to write a dataset
using multiple 'passes' or to leave some values unwritten.
Also, all views are now *inclusive*, so that a view of (0,9) corresponds
to the 10 items 0, 1, 2, ... 9.
Internal Handling of Dataspaces
-------------------------------
H5PartSetNumParticles and H5PartSetNumParticlesStrided now share the same
HDF5 dataspace state in the H5PartFile struct with the calls that modify
the view (H5PartSetView etc.). Previously, the memory and disk dataspaces
were regenerated from the view on every read access, which was unnecessary.
Autogeneration of API Calls
---------------------------
Python scripts have been added to automatically generate read/write call
variants for different data types.
Renamed Fortran Include
-----------------------
The automake system no longer greps the *F90.inc files to generate an include
called 'H5Part.inc'. Instead, the *F90.inc files have been renamed to *.f90,
and awk is used to generate an 'H5PartF.h' file (the same naming convention
as in MPI's 'mpif.h').
The change to *.f90 was necessary to facilitate integration of the Fortran
API into doxygen. Note that the *.f90 files will not compile, nor can they
be included directly. Simply use
include 'H5PartF.h'
in your Fortran code to include all the definitions for Fortran H5Part/H5Block
calls.
64 Char Limit on Dataset Names
------------------------------
Previously, a user could overrun internal buffers for dataset names. Now, a
fixed limit of 64 chars is imposed. Dataset names that are longer than this are
truncated and a warning is printed. We expect that most users are using
short canonical names like x, px, id, etc.
Changes to Existing API
-----------------------
The H5BlockGetFieldInfo and H5BlockGetFieldInfoByName calls now both include
a parameter for the 'type' of the field.
#### H5PART 1.4 ##############################################################
Error Handling
--------------
Now all functions, in which an error could occure, are returning a
value. This value is either a 64bit integer or a pointer.
A negative 64bit integer as result indicates an error. Values >= 0
indicates successfull execution. This is similiar to the convention
used in UNIX system calls, but we do not return -1 but the error
number (which is always negative).
For functions returning a pointer the NULL-pointer is used to indicate
an error. You can call the function H5PartGetErrno() to get the error
number. For the time being there is no strerror(3) or perror(3)
equivalent.
API Changes
-----------
There are several changes in the API of H5Part. The biggest change is
a side-effect of the implementation of strict error handling. The
impact to the existing C/C++ code is very small. But now you *can*
and *should* implement some kind of error handling. The simplest
error handling is to set an error handler which aborts the program as
soon as an error occured.
The next "biggest" change is the use of H5Part types instead of "long
long" and "double". The replacement of "long long" is "h5part_int64_t"
and for "double" "h5part_float64_t". This change has now effect in
Fortran.
In some functions the argument type changed from "int" to
"h5part_int64_t". Since on most systems "int" is a 32bit integer,
calls to these functions must be adapted to the new API. In C/C++ the
compiler will complain about it. But in Fortran you will *not* get an
error message.So, you must check your Fortran code carefully.
Changes in detail (not listed are functions where only the return
type changed from any to "h5part_int64_t"):
New API Changes to old API
h5part_int64_t void
H5PartSetNumParticles (
H5PartFile *f,
h5part_int64_t nparticles long long
);
h5part_int64_t int
H5PartWriteDataFloat64 (
H5PartFile *f,
char *name,
h5part_float64_t *dta double
);
h5part_int64_t int
H5PartWriteDataInt64 (
H5PartFile *f,
char *name,
h5part_int64_t *dta long long
);
h5part_int64_t void
H5PartSetStep (
H5PartFile *f,
h5part_int64_t step int
);
h5part_int64_t void
H5PartSetView (
H5PartFile *f,
h5part_int64_t start, long long
h5part_int64_t end long long
);
h5part_int64_t int
H5PartGetView (
H5PartFile *f,
h5part_int64_t *start, long long
h5part_int64_t *end long long
);
h5part_int64_t int
H5PartReadDataFloat64 (
H5PartFile *f,
char *name,
h5part_float64_t *dta double
);
h5part_int64_t int
H5PartReadDataInt64 (
H5PartFile *f,
char *name,
h5part_int64_t *dta long long
);
h5part_int64_t void
H5PartReadParticleStep (
H5PartFile *f,
h5part_int64_t step, int
h5part_float64_t *x, double
h5part_float64_t *y, double
h5part_float64_t *z, double
h5part_float64_t *px, double
h5part_float64_t *py, double
h5part_float64_t *pz, double
h5part_int64_t *id long long
);
New functions:
h5part_int64_t
H5PartSetVerbosityLevel (
unsigned int
);
h5part_int64_t
H5PartSetErrorHandler (
h5part_error_handler handler
);
h5part_int64_t
H5PartGetErrno (
void
);
h5part_int64_t
H5PartDefaultErrorHandler (
const char *funcname,
const h5part_int64_t eno,
const char *fmt,
...
);
h5part_int64_t
H5PartAbortErrorHandler (
const char *funcname,
const h5part_int64_t eno,
const char *fmt,
...
);
Removed functions:
int
H5PartFileIsValid (
H5PartFile *f
);
README
+29
View File
@@ -0,0 +1,29 @@
Website:
http://vis.lbl.gov/Research/AcceleratorSAPP/
Particle based simulations of accelerator beam-lines, especially in six
dimensional phase space, generate vast amounts of data. Even though a subset of
statistical information regarding phase space or analysis needs to be preserved,
reading and writing such enormous restart files on massively parallel
supercomputing systems remains challenging.
H5Part is a very simple data storage schema and provides an API that simplifies
the reading/writing of the data to the HDF5 file format. An important
foundation for a stable visualization and data analysis environment is a stable
and portable file storage format and its associated APIs. The presence of a
"common file storage format," including associated APIs, will help foster a
fundamental level of interoperability across the project's software
infrastructure. It will also help ensure that key data analysis capabilities
are present during the earliest phases of the software development effort.
H5Part is built on top of the HDF5 (Hierarchical Data Format). HDF5 offers a
self-describing machine-independent binary file format that supports scalable
parallel I/O performance for MPI codes on a variety of supercomputing systems,
and works equally well on laptop computers. The API is available for C, C++, and
Fortran codes. The H5Part file format and APIs enable disparate research groups
with different simulation implementations to transparently share datasets and
data analysis tools. For instance, the common file format will enable groups
that depend on completely different simulation implementations to share data
analysis tools.
autogen.sh
+24 -26
View File
@@ -1,48 +1,46 @@
#!/bin/sh
# Run this to generate all the initial makefiles, etc.
ACLOCAL_FLAGS="-I m4 $ACLOCAL_FLAGS"
LIBTOOLIZE_FLAGS="--force $LIBTOOLIZE_FLAGS"
AUTOMAKE_FLAGS="--add-missing --copy --foreign $AUTOMAKE_FLAGS"
LIBTOOLIZE=`which libtoolize`
if [ "$LIBTOOLIZE" = "" ]; then
LIBTOOLIZE=`which glibtoolize`
fi
if [ "$LIBTOOLIZE" = "" ]; then
echo "libtoolize not found" 1>&2
exit 1
fi
echo "+ making misc files ..."
touch NEWS README AUTHORS ChangeLog
echo
$LIBTOOLIZE $LIBTOOLIZE_FLAGS || {
echo "libtoolize failed"
exit 1
}
echo
echo
echo "+ running aclocal ..."
aclocal $ACLOCAL_FLAGS || {
echo "aclocal failed - check that all needed development files are present on system"
exit 1
echo
echo "aclocal failed - check that all needed development files are present on system"
exit 1
}
echo
echo
echo
echo
echo "+ running autoheader ... "
autoheader || {
echo "autoheader failed"
exit 1
echo
echo "autoheader failed"
exit 1
}
echo
echo
echo
echo "+ running autoconf ... "
autoconf || {
echo "autoconf failed"
exit 1
echo
echo "autoconf failed"
exit 1
}
echo
echo
echo
echo "+ running automake ... "
automake $AUTOMAKE_FLAGS || {
echo "automake failed"
exit 1
automake -a -c --foreign || {
echo
echo "automake failed"
exit 1
}
echo
echo
echo
config.guess
Vendored Executable
+1469
View File
File diff suppressed because it is too large Load Diff
config.sub
Vendored Executable
+1563
View File
File diff suppressed because it is too large Load Diff
configure-crayxt
Executable
+18
View File
@@ -0,0 +1,18 @@
#!/bin/sh
./configure \
$@ \
--enable-parallel \
--enable-fortran \
--enable-tools \
CC=cc CXX=CC FC=pgf90 \
MPICC=cc MPICXX=CC MPIFC=ftn
sed -e 's/pgf90/ftn/g' <Makefile > newMakefile
mv newMakefile Makefile
sed -e 's/pgf90/ftn/g' <src/Makefile > newMakefile
mv newMakefile src/Makefile
sed -e 's/pgf90/ftn/g' <test/Makefile > newMakefile
mv newMakefile test/Makefile
sed -e 's/pgf90/ftn/g' <tools/Makefile > newMakefile
mv newMakefile tools/Makefile
configure.ac
+478 -259
View File
@@ -1,25 +1,18 @@
# Every configure script must call AC_INIT before doing anything else.
# AC_INIT (package, version, [bug-report], [tarname])
AC_INIT([H5hut], [1.99.6], [h5part@lists.psi.ch], H5hut)
AC_INIT([H5Part], [1.6.1], [h5part@lists.psi.ch], H5Part)
# Ensure that a recent enough version of Autoconf is being used.
# If the version of Autoconf being used to create configure is earlier than version,
# print an error message to the standard error output and do not create configure.
AC_PREREQ(2.60)
#AC_PREREQ(2.59)
# should be called right after AC_INIT.
# configure scripts can create a C header file containing `#define' directives.
# The AC_CONFIG_HEADERS macro selects this kind of output.
AC_CONFIG_HEADERS(config.h)
AC_CONFIG_MACRO_DIR([m4])
# AM_INIT_AUTOMAKE is required to use autoconf with automake
AM_INIT_AUTOMAKE
BUILD_LIBS='libH5hut'
USE_C='yes'
AC_CONFIG_HEADER(config.h)
###############################################################################
################# --enable-xxx and --with-xxx Argument ########################
@@ -28,44 +21,68 @@ USE_C='yes'
AC_ARG_ENABLE(
[debug],
[AC_HELP_STRING([--enable-debug],
[Compile with debug flags [default=no]])],
[Compile with debug support [default=no]])],
[USE_DEBUG=$enableval])
AC_ARG_ENABLE(
[c],
[AC_HELP_STRING([--enable-c],
[Compile the C interface [default=yes]])],
[USE_C=$enableval])
[shared],
[AC_HELP_STRING([--enable-shared],
[Compile with shared library support [default=no]])],
[USE_SHARED=$enableval])
AC_ARG_ENABLE(
[64],
[AC_HELP_STRING([--enable-64],
[Compile using 64-bit flags [default=no]])],
[USE_64=$enableval])
AC_ARG_ENABLE(
[fortran],
[AC_HELP_STRING([--enable-fortran],
[AC_HELP_STRING([--enable-fortran],
[Compile the Fortran interface [default=no]])],
[USE_FORTRAN=$enableval])
[USE_FORTRAN=$enableval])
AC_ARG_ENABLE(
[parallel],
[AC_HELP_STRING([--enable-parallel],
[AC_HELP_STRING([--enable-parallel],
[Compile the MPI/IO interface [default=no]])],
[USE_PARALLEL=$enableval])
[USE_PARALLEL=$enableval])
AC_ARG_ENABLE(
[tools],
[AC_HELP_STRING([--enable-tools],
[Compile h5part tools [default=no]])],
[USE_TOOLS=$enableval])
AC_ARG_WITH(
[hdf5],
[AC_HELP_STRING([--with-hdf5],
[mpipath],
[AC_HELP_STRING([--with-mpipath],
[path to MPI installation [default=""]])],
[MPIPATH=$withval], [MPIPATH=""])
AC_ARG_WITH(
[hdf5path],
[AC_HELP_STRING([--with-hdf5path],
[path to HDF5 installation [default=""]])],
[HDF5PATH=$withval], [HDF5PATH=""])
AC_ARG_WITH(
[mpi],
[AC_HELP_STRING([--with-mpi],
[path to MPI installation [default=""]])],
[MPIPATH=$withval;PATH=$MPIPATH/bin:$PATH], [MPIPATH=""])
###############################################################################
################# A SIMPLE WORK AROUND TO USE ENV. VARS #######################
###############################################################################
AC_ARG_WITH(
[lustre],
[AC_HELP_STRING([--with-lustre],
[path to lustre user API [default=""]])],
[LUSTREPATH=$withval], [LUSTREPATH=""])
SAVE_CC=$CC
SAVE_CXX=$CXX
SAVE_FC=$FC
SAVE_MPICC=$MPICC
SAVE_MPICXX=$MPICXX
SAVE_MPIFC=$MPIFC
SAVE_MPILIB=$MPILIB
SAVE_MPIINC=$MPIINC
SAVE_CFLAGS=$CFLAGS
SAVE_FFLAGS=$FFLAGS
SAVE_MPIROOT=$MPIROOT
SAVE_HDF5ROOT=$HDF5ROOT
SAVE_LDFLAGS=$LDFLAGS
###############################################################################
############### PATH SERACH FUNCTION - to be used later... ####################
@@ -79,26 +96,35 @@ AC_ARG_WITH(
# @enddesc
#@@*/
PATH_Search() {
eval $1=""
if test $# -lt 4 ; then
h5part_basedir=""
else
h5part_basedir="$4/"
fi
for h5part_place in $2; do
AC_MSG_CHECKING([looking in $h5part_place ... ])
if test -r "$h5part_basedir$h5part_place/$3" ; then
AC_MSG_RESULT([found])
eval $1="$h5part_place"
break
fi
AC_MSG_RESULT([no])
done
return
PATH_Search()
{
eval $1=""
if test $# -lt 4 ; then
h5part_basedir=""
else
h5part_basedir="$4/"
fi
for h5part_place in $2
do
echo -n "looking in $h5part_place ... $ac_c" #1>&6
if test -r "$h5part_basedir$h5part_place/$3" ; then
echo "$ac_t"" found" #1>&6
eval $1="$h5part_place"
break
fi
if test -d "$h5part_basedir$h5part_place/$3" ; then
echo "$ac_t"" found" #1>&6
eval $1="$h5part_place"
break
fi
echo "$ac_t"" no" #1>&6
done
return
}
###############################################################################
############# MISC SETTINGS INCLUDING C & C++ COMPILER SETTING ################
###############################################################################
@@ -106,66 +132,81 @@ PATH_Search() {
# individual parts host_cpu, host_vendor, and host_os.
AC_CANONICAL_HOST
AC_PROG_MAKE_SET
# Determine a C/C++ compiler to use.
uname=`uname -s`
if test $uname = "AIX"; then
AC_MSG_CHECKING([if system is AIX])
AC_MSG_RESULT([OK])
# If on AIX, define _ALL_SOURCE. Allows the use of some BSD functions.
# Should be called before any macros that run the C compiler.
AC_AIX
fi
# DAVINCI SPECIFIC!!!
if test `uname -n` = "davinci"; then
echo "DAVINCI SPECIFIC TESTING FOR STDC++ LIBRARY!"
PATH_Search STDCXX_CHECK '/usr/lib64 /usr/lib' libstdc++.a
# if STDCXX_CHECK is set...
if test "$STDCXX_CHECK" = "/usr/lib64"; then
echo "STDCXX setting ..."
echo "STDCXX_CHECK = $STDCXX_CHECK ..."
STDCXX="-L/usr/lib64 -lstdc++"
echo "STDCXX = $STDCXX ..."
elif test "$STDCXX_CHECK" = "/usr/lib"; then
echo "STDCXX setting ..."
echo "STDCXX_CHECK = $STDCXX_CHECK ..."
STDCXX="-L/usr/lib -lstdc++"
echo "STDCXX = $STDCXX ..."
fi
fi
# Determine a C compiler to use.
# If CC is not already set in the environment, check for gcc and cc, then
# for other C compilers.
# Set output variable CC to the name of the compiler found.
if test "x$USE_PARALLEL" = "xyes"; then
CCOMPILERS="mpicc cc"
CXXCOMPILERS="mpic++ c++"
else
CCOMPILERS="pgcc pathcc icc gcc cc_r cc"
CXXCOMPILERS="pgcc pathcc icc g++ cc_r c++"
fi
AC_PROG_CC(pgcc pathcc icc cc_r gcc cc)
AC_PROG_CC($CCOMPILERS)
CC=`which $CC`
AC_PROG_CXX($CXXCOMPILERS)
CXX=`which $CXX`
# AC_PROG_CC doesn't pick up cc_r in Bassi. The following AC_PATH_PROGS
# is the fix.
AC_PATH_PROGS([BAS_CC], [cc_r], [], [$PATH])
# if BAS_CC not empty
if test -n "$BAS_CC"; then
echo "CC setting for Bassi ..."
CC=$BAS_CC
echo "CC = $CC ..."
fi
# Determine a C++ compiler to use.
# Check if the environment variable CXX or CCC (in that order) is set;
# if so, then set output variable CXX to its value.
# Otherwise, if the macro is invoked without an argument,
# then search for a C++ compiler under the likely names (first g++ and c++
# then other names).
# If none of those checks succeed, then as a last resort set CXX to g++.
AC_PROG_CXX(pgCC pathCC icc cc_r g++ gcc cc)
# Use macro to set C99 mode instead of checking for gcc, which breaks with
# parallel builds.
AC_PROG_CC_C99
if test "x$ac_cv_prog_cc_c99" = "xno"; then
AC_MSG_ERROR([Cannot set C compiler to use C99 standard!])
exit 1
fi
# Set output variable INSTALL to the path of a BSD-compatible install program,
# if one is found in the current PATH.
# Otherwise, set INSTALL to `dir/install-sh -c`
AC_PROG_INSTALL
AC_PROG_AWK
# Disable shared libraries by default: can be enabled with --enable-shared
LT_INIT([disable-shared])
AC_PROG_LIBTOOL
# AM_INIT_AUTOMAKE is required to use autoconf with automake
AM_INIT_AUTOMAKE()
AC_PROG_RANLIB
# Default prefix for bindir, etc... (eg >> ./build/bin)
AC_PREFIX_DEFAULT(`pwd`/build)
# Checks for header files.
AC_CHECK_HEADERS([fcntl.h limits.h stdint.h stdlib.h string.h sys/ioctl.h unistd.h])
# Checks for typedefs, structures, and compiler characteristics.
AC_HEADER_STDBOOL
AC_C_INLINE
AC_TYPE_INT16_T
AC_TYPE_INT32_T
AC_TYPE_INT64_T
AC_TYPE_SIZE_T
AC_TYPE_SSIZE_T
AC_TYPE_UINT16_T
AC_TYPE_UINT32_T
AC_TYPE_UINT64_T
AC_CHECK_TYPES([ptrdiff_t])
# Checks for library functions.
AC_FUNC_MALLOC
AC_FUNC_REALLOC
AC_CHECK_FUNCS([memmove memset pow strchr strdup strerror strstr])
# AC_DEFINE_UNQUOTED (variable, value, [description])
# Define the C preprocessor variable variable to value
@@ -177,6 +218,7 @@ AC_DEFINE_UNQUOTED(MY_GNUNAME, "${host_cpu}-${host_vendor}-${host_os}", "")
AC_DEFINE_UNQUOTED(MY_UNAME, "$uname", "")
###############################################################################
######################## CONFIGURE LINE OPTIONS ###############################
###############################################################################
@@ -186,109 +228,226 @@ AC_MSG_CHECKING([if debug is enabled])
if test "X$USE_DEBUG" = "Xyes"; then
AC_MSG_RESULT([yes])
CFLAGS="$CFLAGS -g"
FFLAGS="$FFLAGS -g"
else
AC_MSG_RESULT([no])
fi
############################ fortran enabled ##################################
AC_MSG_CHECKING([if C interface enabled])
if test "X$USE_C" = "Xyes"; then
AC_MSG_RESULT([yes])
BINDINGS="$BINDINGS C"
LIB_C="libH5hutC.la"
BUILD_LIBS="$BUILD_LIBS libH5hutC"
BUILD_TESTS="$BUILD_TESTS h5u_test h5b_test"
BUILD_TOOLS="$BUILD_TOOLS h5hutcc h5PartDcToVtk h5PartSurfaceToVtk"
# shared library
AC_MSG_CHECKING([if shared libraries are enabled])
if test "X$USE_SHARED" = "Xyes"; then
AC_MSG_RESULT([yes])
CFLAGS="$CFLAGS -fPIC"
FFLAGS="$FFLAGS -fPIC"
else
AC_MSG_RESULT([no])
fi
###################### 64-bit compilation enabled #############################
AC_MSG_CHECKING([if 64-bit compilation is enabled])
# If --enable-64 is set in the configure line
if test "X$USE_64:/f90
" = "Xyes"; then
AC_MSG_RESULT([yes])
if test $uname = "AIX"; then
CFLAGS="$CFLAGS -q64"
FFLAGS="$FFLAGS -q64"
fi
if test $uname = "IRIX64"; then
CFLAGS="$CFLAGS -64"
FFLAGS="$FFLAGS -64 -fPIC -fno-second-underscore"
fi
else
AC_MSG_RESULT([no])
fi
############################ fortran enabled ##################################
AC_MSG_CHECKING([if fortran interface enabled])
if test "X$USE_FORTRAN" = "Xyes"; then
AC_MSG_RESULT([yes])
BINDINGS="$BINDINGS Fortran"
LIB_FORTRAN="libH5hutF.la"
BUILD_LIBS="$BUILD_LIBS libH5hutF"
AC_MSG_RESULT([yes])
if test "X$USE_PARALLEL" = "Xyes"; then
AC_PROG_FC(mpif90 mpif77)
else
AC_PROG_FC(pgf90 ifort xlf_r pathf90 g95 g90 ftn gfortran)
fi
AC_PROG_FC(pgf90 ifort xlf_r pathf90 g95 g90 ftn gfortran)
if test -z "$FC" ; then
AC_MSG_ERROR([Cannot find a fortran compiler!!!])
exit 1
fi
if test -z "$FC" ; then
AC_MSG_ERROR([Cannot find a Fortran compiler!])
exit 1
fi
if test ! $uname = "AIX"; then
FFLAGS="${FFLAGS} -fPIC"
fi
if test $FC = "g90"; then
FFLAGS="${FFLAGS} -fno-second-underscore"
fi
if test $FC = "g90"; then
FFLAGS="${FFLAGS} -fno-second-underscore"
fi
if test $FC = "g95"; then
FFLAGS="${FFLAGS} -fno-second-underscore"
fi
if test $FC = "g95"; then
FFLAGS="${FFLAGS} -fno-second-underscore"
fi
AC_MSG_CHECKING([symbol convention in object files])
`cd src/Fortran && rm -f TestUnderscore.o TestUnderscoreC.o TestUnderscore`
`cd src/Fortran && ${FC} ${FFLAGS} -c TestUnderscore.f`
`cd src/Fortran && ${CC} ${CFLAGS} -c TestUnderscoreC.c`
`cd src/Fortran && ${FC} ${FFLAGS} -o TestUnderscore TestUnderscore.o TestUnderscoreC.o`
if test $FC = "gfortran"; then
FFLAGS="${FFLAGS} -DHAVE_GFORTRAN"
fi
if test -f src/Fortran/TestUnderscore ; then
UNDERSCORE_H=Underscore.h
`cd src/Fortran && ./TestUnderscore > Underscore.h`
AC_MSG_RESULT([ok])
else
AC_MSG_RESULT([nok])
AC_MSG_ERROR([Cannot determine the symbon convention for Fortran object files!])
exit 1
fi
AC_MSG_CHECKING([symbol convention in object files])
`cd src && rm -f TestUnderscore.o TestUnderscoreC.o TestUnderscore`
`cd src && ${FC} ${FFLAGS} -c TestUnderscore.f`
`cd src && ${CC} ${CFLAGS} -c TestUnderscoreC.c`
`cd src && ${FC} ${FFLAGS} -o TestUnderscore TestUnderscore.o TestUnderscoreC.o -lc`
if test -f src/TestUnderscore ; then
UNDERSCORE_H=Underscore.h
`cd src && ./TestUnderscore > Underscore.h`
AC_MSG_RESULT([ok])
else
AC_MSG_RESULT([nok])
AC_MSG_ERROR([Cannot build fortran executables!!!])
exit 1
fi
else
AC_MSG_RESULT([no])
AC_MSG_RESULT([no])
fi
######################## parallel interface enabled ###########################
AC_MSG_CHECKING([if parallel interface enabled])
if test "X$USE_PARALLEL" = "Xyes"; then
AC_MSG_RESULT([yes])
AC_MSG_RESULT([yes])
CFLAGS="${CFLAGS} -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK"
CFLAGS="${CFLAGS} -DPARALLEL_IO -DH5_HAVE_PARALLEL -DMPICH_IGNORE_CXX_SEEK"
AC_MSG_CHECKING([if we can compile MPI code without setting flags])
AC_TRY_LINK([#include "mpi.h"], [
MPI_Comm comm;
int n;
MPI_Comm_size( comm, &n ); ],
[AC_MSG_RESULT([yes]); r='yes'], [AC_MSG_RESULT([no]); r='no'] )
AC_MSG_CHECKING([if we can compile MPI code without setting flags])
AC_TRY_LINK([#include "mpi.h"], [
MPI_Comm comm;
int n;
MPI_Comm_size( comm, &n ); ],
[echo 'yes'; r='yes'], [echo "no"; r='no'] )
if test "X$r" = "Xno"; then
AC_MSG_ERROR([MPI wrapper can't compile or link MPI program! Please set the INCLUDE and LIBS variables manually.])
exit 1
if test "X$r" = "Xno"; then
AC_PATH_PROGS([MPICC], [mpicc mpcc_r], [], [$PATH])
AC_PATH_PROGS([MPICXX], [mpicxx mpcc_r], [], [$PATH])
if test -z "$MPICC" -o -z "$MPICXX"; then
AC_MSG_CHECKING([for MPI root ])
AC_MSG_RESULT([])
if test -n "$MPIROOT"; then
P=${MPIROOT}
elif test -n "$MPIHOME"; then
P=${MPIHOME}
elif test -n "$MPIPATH"; then
P=${MPIPATH}
else
P=''
P="$P /usr"
P="$P /usr/local"
P="$P /usr/local/mpi"
P="$P /usr/local/packages/mpi"
P="$P /usr/local/mpich2"
P="$P /usr/local/mpich"
P="$P /opt/xt-mpt/default/mpich2-64/P2"
fi
PATH_Search MPIROOT "$P" include/mpi.h
if test ! -n "$MPIROOT"; then
AC_MSG_ERROR([Cannot determine MPI root!!!])
exit 1
fi
if test -e "${MPIROOT}/bin/mpicc"; then
MPICC=${MPIROOT}/bin/mpicc
fi
if test -e "${MPIROOT}/bin/mpicxx"; then
MPICXX=${MPIROOT}/bin/mpicxx
fi
fi
TPTARGET="${TPTARGET} H5PartTestP H5PartAndreasTest Bench"
TBTARGET="${TBTARGET} H5BlockTestAttributes"
TBTARGET="${TBTARGET} H5BlockParTestScalarField"
# parallel + fortran
if test "X$USE_FORTRAN" = "Xyes"; then
TPTARGET="${TPTARGET} H5testFpar"
TBTARGET="${TBTARGET} H5BlockParTestScalarFieldF"
if test -z "$MPICC" -o -z "$MPICXX"; then
MPIINC="${MPIINC} -I${MPIROOT}/include"
FFLAGS="${FFLAGS} -I${MPIROOT}/include"
AC_MSG_CHECKING([for name of MPI lib ])
if test -e ${MPIROOT}/lib/libmpi.a; then
MPILIB="-L${MPIROOT}/lib -lmpi"
elif test -e ${MPIROOT}/lib/libmpi.so; then
MPILIB="-L${MPIROOT}/lib -lmpi"
elif test -e ${MPIROOT}/lib/libmpich.a; then
MPILIB="-L${MPIROOT}/lib -lmpich"
elif test -e ${MPIROOT}/lib/libmpich.so; then
MPILIB="-L${MPIROOT}/lib -lmpich"
else
AC_MSG_RESULT([not found])
exit 1
fi
AC_MSG_RESULT([${MPILIB}])
fi
if test -n "$MPICC"; then
CC=${MPICC}
fi
if test -n "$MPICXX"; then
CXX=${MPICXX}
fi
fi
H5P_LIB_NAME="-lpH5Part"
MTARGET="libpH5Part.a"
TTARGET="test"
# parallel + fortran
if test "X$USE_FORTRAN" = "Xyes"; then
AC_PATH_PROGS([MPIFC], [mpxlf_r mpif90], [], [$PATH])
FFLAGS="${FFLAGS} -DPARALLEL_IO"
if test -z "${MPIFC}" ; then
if test -e "${MPIROOT}/bin/mpif90"; then
MPIFC=${MPIROOT}/bin/mpif90
fi
fi
# if MPIFC empty
if test ! -n "$MPIFC"; then
AC_MSG_CHECKING([ No MPIFC detected. Setting MPIFC to FC.])
MPIFC=$FC
echo "MPIFC = $MPIFC ..."
fi
if test -n "$MPIFC"; then
FC=${MPIFC}
fi
H5P_LIB_NAME="-lpH5PartF"
MTARGET="${MTARGET} libpH5PartF.a"
TTARGET="${TTARGET} testf"
fi
else # --enable-parallel=no
AC_MSG_RESULT([no])
AC_MSG_RESULT([no])
TPTARGET="${TPTARGET} H5test"
TBTARGET="${TBTARGET} H5BlockTestAttributes"
H5P_LIB_NAME="-lH5Part"
MTARGET="libH5Part.a"
TTARGET="test"
if test "X$USE_FORTRAN" = "Xyes"; then
TPTARGET="${TPTARGET} H5testF"
TBTARGET="${TBTARGET} H5BlockTestAttributesF"
fi
if test "X$USE_FORTRAN" = "Xyes"; then
H5P_LIB_NAME="-lH5PartF"
MTARGET="${MTARGET} libH5PartF.a"
TTARGET="${TTARGET} testf"
fi
fi
AC_MSG_CHECKING([whether tools are enabled])
if test "X$USE_TOOLS" = "Xyes"; then
AC_MSG_RESULT([yes])
BUILD_TOOLS="h5pAttrib h5pToGNUplot homdynToH5p"
# tools + parallel
if test "X$USE_PARALLEL" = "Xyes"; then
BUILD_TOOLS="${BUILD_TOOLS} H5PartBench H5BlockBench"
fi
else
AC_MSG_RESULT([no])
fi
###############################################################################
@@ -297,109 +456,165 @@ fi
AC_MSG_CHECKING([for HDF5 root ])
AC_MSG_RESULT([])
if test -n "${HDF5PATH}" ; then
P=${HDF5PATH}
elif test -n "${HDF5ROOT}"; then
P=${HDF5ROOT}
if test -n "${HDF5ROOT}"; then
P=${HDF5ROOT}
elif test -n "${HDF5HOME}" ; then
P=${HDF5HOME}
elif test -n "${HDF5_DIR}" ; then
P=${HDF5_DIR}
P=${HDF5HOME}
elif test -n "${HDF5PATH}" ; then
P=${HDF5PATH}
else
P=''
P="$P /usr"
P="$P /usr/local"
P="$P /usr/local/hdf5"
P="$P /usr/local/packages/hdf5"
P="$P /apps/hdf5"
P="$P /opt/hdf5"
P=''
P="$P /usr"
P="$P /usr/local"
P="$P /usr/local/hdf5"
P="$P /usr/local/packages/hdf5"
P="$P /apps/hdf5"
if test "X$USE_PARALLEL" = "Xyes"; then
P="$P /usr/local/phdf5"
P="$P /usr/local/hdf5/hdf5_par"
if test "X$USE_64" = "Xyes"; then
P="$P /usr/common/usg/hdf5/64/default/parallel"
else
P="$P /usr/common/usg/hdf5/32/default/parallel"
fi
else
P="$P /usr/local/hdf5/hdf5_serial"
if test "X$USE_64" = "Xyes"; then
P="$P /usr/common/usg/hdf5/64/default/serial"
else
P="$P /usr/common/usg/hdf5/32/default/serial"
fi
fi
fi
PATH_Search HDF5ROOT "$P" include/hdf5.h
if test -z "$HDF5ROOT"; then
AC_MSG_ERROR([Cannot find an HDF5 library!])
exit 1
AC_MSG_ERROR([Cannot determine HDF5 root!!!])
exit 1
fi
INCLUDES="$INCLUDES -I$HDF5ROOT/include"
LDFLAGS="$LDFLAGS -L$HDF5ROOT/lib"
LIBS="$LIBS -lhdf5"
AC_MSG_CHECKING([if we need to link to libsz ])
if test -n "$HDF5ROOT"; then
if test -f $HDF5ROOT/lib/libsz.a; then
AC_MSG_RESULT([yes])
LDFLAGS="$LDFLAGS -L$HDF5ROOT/lib"
LIBS="$LIBS -lsz"
else
AC_MSG_RESULT([no])
fi
if test -f $HDF5ROOT/lib/libsz.a; then
AC_MSG_RESULT([yes])
SZLIB="-L$HDF5ROOT/lib/ -lsz"
else
AC_MSG_RESULT([no])
SZLIB=""
fi
fi
AC_MSG_CHECKING([for lustre API ])
AC_MSG_RESULT([])
if test -n "${LUSTREPATH}"; then
P=${LUSTREPATH}
elif test -n "${LUSTREROOT}" ; then
P=${LUSTREROOT}
elif test -n "${LUSTREHOME}" ; then
P=${LUSTREHOME}
elif test -n "${LUSTRE_DIR}" ; then
P=${LUSTRE_DIR}
else
P=''
P="$P /usr"
P="$P /usr/local"
P="$P /usr/local/lustre"
P="$P /opt/lustre"
fi
PATH_Search LUSTREROOT "$P" usr/include/lustre/liblustreapi.h
if test -z "$LUSTREROOT"; then
AC_MSG_WARN([Couldn't locate the lustre API... building without support for lustre striping!])
else
CFLAGS="$CFLAGS -DH5_USE_LUSTRE"
INCLUDES="$INCLUDES -I$LUSTREROOT/usr/include"
LDFLAGS="$LDFLAGS -L$LUSTREROOT/usr/lib"
LIBS="$LIBS -llustreapi"
AC_MSG_CHECKING([for static zlib root ])
echo
PATH_Search ZLIBROOT '/apps/zlib' lib/libz.a
if test -n "$ZLIBROOT"; then
LDFLAGS="$LDFLAGS -L$ZLIBROOT/lib"
fi
LIBS="$LIBS -lz -lm"
FCFLAGS=${FFLAGS}
CXXFLAGS=${CFLAGS}
###############################################################################
#################### MISC SETTINGS - path, flags, etc #########################
###############################################################################
H5P_LIB_LOC=`pwd`/src
###############################################################################
################# A SIMPLE WORK AROUND TO USE ENV. VARS #######################
###############################################################################
#if there was an external input for the variable...
if test -n "$SAVE_CC"; then
CC=$SAVE_CC
fi
if test -n "$SAVE_CXX"; then
CXX=$SAVE_CXX
fi
if test -n "$SAVE_FC"; then
FC=$SAVE_FC
fi
if test -n "$SAVE_MPICC"; then
MPICC=$SAVE_MPICC
fi
if test -n "$SAVE_MPICXX"; then
MPICXX=$SAVE_MPICXX
fi
if test -n "$SAVE_MPIFC"; then
MPIFC=$SAVE_MPIFC
fi
if test -n "$SAVE_MPILIB"; then
MPILIB=$SAVE_MPILIB
fi
if test -n "$SAVE_MPIINC"; then
MPIINC=$SAVE_MPIINC
fi
if test -n "$SAVE_CFLAGS"; then
CFLAGS="$SAVE_CFLAGS ${CFLAGS}"
fi
if test -n "$SAVE_FFLAGS"; then
FFLAGS=$SAVE_FFLAGS
fi
if test -n "$SAVE_MPIROOT"; then
MPIROOT=$SAVE_MPIROOT
fi
if test -n "$SAVE_HDF5ROOT"; then
HDF5ROOT=$SAVE_HDF5ROOT
fi
if test -n "$SAVE_LDFLAGS"; then
LDFLAGS=$SAVE_LDFLAGS
fi
###############################################################################
############## EXPORTING VARIABLES & CREATING OUTPUT FILES ####################
###############################################################################
# AC_SUBST (variable, [value])
# Create an output variable from a shell variable. Make AC_OUTPUT substitute
# the variable variable into output files (typically one or more `Makefile's).
# This means that AC_OUTPUT will replace instances of `@variable@' in input
# files with the value that the shell variable variable has when AC_OUTPUT is
# called. This value of variable should not contain literal newlines. If
# value is given, in addition assign it to variable.
# Create an output variable from a shell variable.
# Make AC_OUTPUT substitute the variable variable into output files (typically one or more `Makefile's).
# This means that AC_OUTPUT will replace instances of `@variable@' in input files with the value that
# the shell variable variable has when AC_OUTPUT is called.
# This value of variable should not contain literal newlines.
# If value is given, in addition assign it to variable.
AC_SUBST(MPIROOT)
AC_SUBST(HDF5ROOT)
AC_SUBST(LUSTREROOT)
AC_SUBST(MPIINC)
AC_SUBST(MPILIB)
AC_SUBST(MPICC)
AC_SUBST(MPICXX)
AC_SUBST(MPIFC)
AC_SUBST(MTARGET)
AC_SUBST(TTARGET)
AC_SUBST(SZLIB)
AC_SUBST(CFLAGS)
AC_SUBST(FFLAGS)
AC_SUBST(INCLUDES)
AC_SUBST(LDFLAGS)
AC_SUBST(LIBS)
AC_SUBST(STDCXX)
AC_SUBST(H5P_LIB_LOC)
AC_SUBST(H5P_LIB_NAME)
AC_SUBST(UNDERSCORE_H)
AC_SUBST(LIB_C)
AC_SUBST(LIB_FORTRAN)
AC_SUBST(BINDINGS)
AC_SUBST(BUILD_TESTS)
AC_SUBST(BUILD_TOOLS)
AC_SUBST(LDFLAGS)
# Make AC_OUTPUT create each `file' by copying an input file (by default `file.in'),
# substituting the output variable values.
AC_CONFIG_FILES([
Makefile
src/Makefile
src/C/Makefile
src/h5core/Makefile
src/Fortran/Makefile
test/Makefile
test/H5Fed/Makefile
tools/Makefile
tools/h5hutcc
Makefile
doc/Makefile
src/Makefile
test/Makefile
tools/Makefile
])
AC_OUTPUT
@@ -407,23 +622,27 @@ AC_OUTPUT
###############################################################################
########################## PRINTING SUMMARY ###################################
###############################################################################
AC_MSG_RESULT([ ])
AC_MSG_RESULT([Summary:])
AC_MSG_RESULT([ ])
AC_MSG_RESULT([Host OS: $host_os])
AC_MSG_RESULT([Host CPU: $host_cpu])
AC_MSG_RESULT([Host vendor: $host_vendor])
AC_MSG_RESULT([Build libraries: $BUILD_LIBS])
AC_MSG_RESULT([Build test programs: $BUILD_TESTS])
AC_MSG_RESULT([Build tools: $BUILD_TOOLS])
AC_MSG_RESULT([CC = $CC])
AC_MSG_RESULT([CXX = $CXX])
AC_MSG_RESULT([FC = $FC])
AC_MSG_RESULT([CFLAGS = $CFLAGS])
AC_MSG_RESULT([FFLAGS = $FFLAGS])
AC_MSG_RESULT([INCLUDES = $INCLUDES])
AC_MSG_RESULT([LDFLAGS = $LDFLAGS])
AC_MSG_RESULT([LIBS = $LIBS])
AC_MSG_RESULT([HDF5ROOT = $HDF5ROOT])
AC_MSG_RESULT([LUSTREROOT = $LUSTREROOT])
AC_MSG_RESULT([ ])
echo
echo
echo "Summary for `(hostname || uname -n) 2>/dev/null | sed 1q`:"
echo
echo "Host OS: $host_os"
echo "Host CPU: $host_cpu"
echo "Host vendor: $host_vendor"
echo "Build libraries: $MTARGET"
echo "Build test programs: $TTARGET"
echo "Build tools: $BUILD_TOOLS"
echo "CC = $CC"
echo "CXX = $CXX"
echo "FC = $FC"
echo "MPICC = $MPICC"
echo "MPICXX = $MPICXX"
echo "MPIFC = $MPIFC"
echo "CFLAGS = $CFLAGS"
echo "FFLAGS = $FFLAGS"
echo "MPILIB = $MPILIB"
echo "MPIINC = $MPIINC"
echo "MPIROOT = $MPIROOT"
echo "HDF5ROOT = $HDF5ROOT"
echo "LDFLAGS = $LDFLAGS"
echo
depcomp
Executable
+529
View File
@@ -0,0 +1,529 @@
#! /bin/sh
# depcomp - compile a program generating dependencies as side-effects
scriptversion=2005-02-09.22
# Copyright (C) 1999, 2000, 2003, 2004, 2005 Free Software Foundation, Inc.
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2, or (at your option)
# any later version.
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
# 02111-1307, USA.
# As a special exception to the GNU General Public License, if you
# distribute this file as part of a program that contains a
# configuration script generated by Autoconf, you may include it under
# the same distribution terms that you use for the rest of that program.
# Originally written by Alexandre Oliva <oliva@dcc.unicamp.br>.
case $1 in
'')
echo "$0: No command. Try \`$0 --help' for more information." 1>&2
exit 1;
;;
-h | --h*)
cat <<\EOF
Usage: depcomp [--help] [--version] PROGRAM [ARGS]
Run PROGRAMS ARGS to compile a file, generating dependencies
as side-effects.
Environment variables:
depmode Dependency tracking mode.
source Source file read by `PROGRAMS ARGS'.
object Object file output by `PROGRAMS ARGS'.
DEPDIR directory where to store dependencies.
depfile Dependency file to output.
tmpdepfile Temporary file to use when outputing dependencies.
libtool Whether libtool is used (yes/no).
Report bugs to <bug-automake@gnu.org>.
EOF
exit $?
;;
-v | --v*)
echo "depcomp $scriptversion"
exit $?
;;
esac
if test -z "$depmode" || test -z "$source" || test -z "$object"; then
echo "depcomp: Variables source, object and depmode must be set" 1>&2
exit 1
fi
# Dependencies for sub/bar.o or sub/bar.obj go into sub/.deps/bar.Po.
depfile=${depfile-`echo "$object" |
sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`}
tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`}
rm -f "$tmpdepfile"
# Some modes work just like other modes, but use different flags. We
# parameterize here, but still list the modes in the big case below,
# to make depend.m4 easier to write. Note that we *cannot* use a case
# here, because this file can only contain one case statement.
if test "$depmode" = hp; then
# HP compiler uses -M and no extra arg.
gccflag=-M
depmode=gcc
fi
if test "$depmode" = dashXmstdout; then
# This is just like dashmstdout with a different argument.
dashmflag=-xM
depmode=dashmstdout
fi
case "$depmode" in
gcc3)
## gcc 3 implements dependency tracking that does exactly what
## we want. Yay! Note: for some reason libtool 1.4 doesn't like
## it if -MD -MP comes after the -MF stuff. Hmm.
"$@" -MT "$object" -MD -MP -MF "$tmpdepfile"
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
mv "$tmpdepfile" "$depfile"
;;
gcc)
## There are various ways to get dependency output from gcc. Here's
## why we pick this rather obscure method:
## - Don't want to use -MD because we'd like the dependencies to end
## up in a subdir. Having to rename by hand is ugly.
## (We might end up doing this anyway to support other compilers.)
## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like
## -MM, not -M (despite what the docs say).
## - Using -M directly means running the compiler twice (even worse
## than renaming).
if test -z "$gccflag"; then
gccflag=-MD,
fi
"$@" -Wp,"$gccflag$tmpdepfile"
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
rm -f "$depfile"
echo "$object : \\" > "$depfile"
alpha=ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz
## The second -e expression handles DOS-style file names with drive letters.
sed -e 's/^[^:]*: / /' \
-e 's/^['$alpha']:\/[^:]*: / /' < "$tmpdepfile" >> "$depfile"
## This next piece of magic avoids the `deleted header file' problem.
## The problem is that when a header file which appears in a .P file
## is deleted, the dependency causes make to die (because there is
## typically no way to rebuild the header). We avoid this by adding
## dummy dependencies for each header file. Too bad gcc doesn't do
## this for us directly.
tr ' ' '
' < "$tmpdepfile" |
## Some versions of gcc put a space before the `:'. On the theory
## that the space means something, we add a space to the output as
## well.
## Some versions of the HPUX 10.20 sed can't process this invocation
## correctly. Breaking it into two sed invocations is a workaround.
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
hp)
# This case exists only to let depend.m4 do its work. It works by
# looking at the text of this script. This case will never be run,
# since it is checked for above.
exit 1
;;
sgi)
if test "$libtool" = yes; then
"$@" "-Wp,-MDupdate,$tmpdepfile"
else
"$@" -MDupdate "$tmpdepfile"
fi
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
rm -f "$depfile"
if test -f "$tmpdepfile"; then # yes, the sourcefile depend on other files
echo "$object : \\" > "$depfile"
# Clip off the initial element (the dependent). Don't try to be
# clever and replace this with sed code, as IRIX sed won't handle
# lines with more than a fixed number of characters (4096 in
# IRIX 6.2 sed, 8192 in IRIX 6.5). We also remove comment lines;
# the IRIX cc adds comments like `#:fec' to the end of the
# dependency line.
tr ' ' '
' < "$tmpdepfile" \
| sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' | \
tr '
' ' ' >> $depfile
echo >> $depfile
# The second pass generates a dummy entry for each header file.
tr ' ' '
' < "$tmpdepfile" \
| sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' -e 's/$/:/' \
>> $depfile
else
# The sourcefile does not contain any dependencies, so just
# store a dummy comment line, to avoid errors with the Makefile
# "include basename.Plo" scheme.
echo "#dummy" > "$depfile"
fi
rm -f "$tmpdepfile"
;;
aix)
# The C for AIX Compiler uses -M and outputs the dependencies
# in a .u file. In older versions, this file always lives in the
# current directory. Also, the AIX compiler puts `$object:' at the
# start of each line; $object doesn't have directory information.
# Version 6 uses the directory in both cases.
stripped=`echo "$object" | sed 's/\(.*\)\..*$/\1/'`
tmpdepfile="$stripped.u"
if test "$libtool" = yes; then
"$@" -Wc,-M
else
"$@" -M
fi
stat=$?
if test -f "$tmpdepfile"; then :
else
stripped=`echo "$stripped" | sed 's,^.*/,,'`
tmpdepfile="$stripped.u"
fi
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
if test -f "$tmpdepfile"; then
outname="$stripped.o"
# Each line is of the form `foo.o: dependent.h'.
# Do two passes, one to just change these to
# `$object: dependent.h' and one to simply `dependent.h:'.
sed -e "s,^$outname:,$object :," < "$tmpdepfile" > "$depfile"
sed -e "s,^$outname: \(.*\)$,\1:," < "$tmpdepfile" >> "$depfile"
else
# The sourcefile does not contain any dependencies, so just
# store a dummy comment line, to avoid errors with the Makefile
# "include basename.Plo" scheme.
echo "#dummy" > "$depfile"
fi
rm -f "$tmpdepfile"
;;
icc)
# Intel's C compiler understands `-MD -MF file'. However on
# icc -MD -MF foo.d -c -o sub/foo.o sub/foo.c
# ICC 7.0 will fill foo.d with something like
# foo.o: sub/foo.c
# foo.o: sub/foo.h
# which is wrong. We want:
# sub/foo.o: sub/foo.c
# sub/foo.o: sub/foo.h
# sub/foo.c:
# sub/foo.h:
# ICC 7.1 will output
# foo.o: sub/foo.c sub/foo.h
# and will wrap long lines using \ :
# foo.o: sub/foo.c ... \
# sub/foo.h ... \
# ...
"$@" -MD -MF "$tmpdepfile"
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
rm -f "$depfile"
# Each line is of the form `foo.o: dependent.h',
# or `foo.o: dep1.h dep2.h \', or ` dep3.h dep4.h \'.
# Do two passes, one to just change these to
# `$object: dependent.h' and one to simply `dependent.h:'.
sed "s,^[^:]*:,$object :," < "$tmpdepfile" > "$depfile"
# Some versions of the HPUX 10.20 sed can't process this invocation
# correctly. Breaking it into two sed invocations is a workaround.
sed 's,^[^:]*: \(.*\)$,\1,;s/^\\$//;/^$/d;/:$/d' < "$tmpdepfile" |
sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
tru64)
# The Tru64 compiler uses -MD to generate dependencies as a side
# effect. `cc -MD -o foo.o ...' puts the dependencies into `foo.o.d'.
# At least on Alpha/Redhat 6.1, Compaq CCC V6.2-504 seems to put
# dependencies in `foo.d' instead, so we check for that too.
# Subdirectories are respected.
dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
test "x$dir" = "x$object" && dir=
base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
if test "$libtool" = yes; then
# With Tru64 cc, shared objects can also be used to make a
# static library. This mecanism is used in libtool 1.4 series to
# handle both shared and static libraries in a single compilation.
# With libtool 1.4, dependencies were output in $dir.libs/$base.lo.d.
#
# With libtool 1.5 this exception was removed, and libtool now
# generates 2 separate objects for the 2 libraries. These two
# compilations output dependencies in in $dir.libs/$base.o.d and
# in $dir$base.o.d. We have to check for both files, because
# one of the two compilations can be disabled. We should prefer
# $dir$base.o.d over $dir.libs/$base.o.d because the latter is
# automatically cleaned when .libs/ is deleted, while ignoring
# the former would cause a distcleancheck panic.
tmpdepfile1=$dir.libs/$base.lo.d # libtool 1.4
tmpdepfile2=$dir$base.o.d # libtool 1.5
tmpdepfile3=$dir.libs/$base.o.d # libtool 1.5
tmpdepfile4=$dir.libs/$base.d # Compaq CCC V6.2-504
"$@" -Wc,-MD
else
tmpdepfile1=$dir$base.o.d
tmpdepfile2=$dir$base.d
tmpdepfile3=$dir$base.d
tmpdepfile4=$dir$base.d
"$@" -MD
fi
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
exit $stat
fi
for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
do
test -f "$tmpdepfile" && break
done
if test -f "$tmpdepfile"; then
sed -e "s,^.*\.[a-z]*:,$object:," < "$tmpdepfile" > "$depfile"
# That's a tab and a space in the [].
sed -e 's,^.*\.[a-z]*:[ ]*,,' -e 's,$,:,' < "$tmpdepfile" >> "$depfile"
else
echo "#dummy" > "$depfile"
fi
rm -f "$tmpdepfile"
;;
#nosideeffect)
# This comment above is used by automake to tell side-effect
# dependency tracking mechanisms from slower ones.
dashmstdout)
# Important note: in order to support this mode, a compiler *must*
# always write the preprocessed file to stdout, regardless of -o.
"$@" || exit $?
# Remove the call to Libtool.
if test "$libtool" = yes; then
while test $1 != '--mode=compile'; do
shift
done
shift
fi
# Remove `-o $object'.
IFS=" "
for arg
do
case $arg in
-o)
shift
;;
$object)
shift
;;
*)
set fnord "$@" "$arg"
shift # fnord
shift # $arg
;;
esac
done
test -z "$dashmflag" && dashmflag=-M
# Require at least two characters before searching for `:'
# in the target name. This is to cope with DOS-style filenames:
# a dependency such as `c:/foo/bar' could be seen as target `c' otherwise.
"$@" $dashmflag |
sed 's:^[ ]*[^: ][^:][^:]*\:[ ]*:'"$object"'\: :' > "$tmpdepfile"
rm -f "$depfile"
cat < "$tmpdepfile" > "$depfile"
tr ' ' '
' < "$tmpdepfile" | \
## Some versions of the HPUX 10.20 sed can't process this invocation
## correctly. Breaking it into two sed invocations is a workaround.
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
dashXmstdout)
# This case only exists to satisfy depend.m4. It is never actually
# run, as this mode is specially recognized in the preamble.
exit 1
;;
makedepend)
"$@" || exit $?
# Remove any Libtool call
if test "$libtool" = yes; then
while test $1 != '--mode=compile'; do
shift
done
shift
fi
# X makedepend
shift
cleared=no
for arg in "$@"; do
case $cleared in
no)
set ""; shift
cleared=yes ;;
esac
case "$arg" in
-D*|-I*)
set fnord "$@" "$arg"; shift ;;
# Strip any option that makedepend may not understand. Remove
# the object too, otherwise makedepend will parse it as a source file.
-*|$object)
;;
*)
set fnord "$@" "$arg"; shift ;;
esac
done
obj_suffix="`echo $object | sed 's/^.*\././'`"
touch "$tmpdepfile"
${MAKEDEPEND-makedepend} -o"$obj_suffix" -f"$tmpdepfile" "$@"
rm -f "$depfile"
cat < "$tmpdepfile" > "$depfile"
sed '1,2d' "$tmpdepfile" | tr ' ' '
' | \
## Some versions of the HPUX 10.20 sed can't process this invocation
## correctly. Breaking it into two sed invocations is a workaround.
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile" "$tmpdepfile".bak
;;
cpp)
# Important note: in order to support this mode, a compiler *must*
# always write the preprocessed file to stdout.
"$@" || exit $?
# Remove the call to Libtool.
if test "$libtool" = yes; then
while test $1 != '--mode=compile'; do
shift
done
shift
fi
# Remove `-o $object'.
IFS=" "
for arg
do
case $arg in
-o)
shift
;;
$object)
shift
;;
*)
set fnord "$@" "$arg"
shift # fnord
shift # $arg
;;
esac
done
"$@" -E |
sed -n '/^# [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' |
sed '$ s: \\$::' > "$tmpdepfile"
rm -f "$depfile"
echo "$object : \\" > "$depfile"
cat < "$tmpdepfile" >> "$depfile"
sed < "$tmpdepfile" '/^$/d;s/^ //;s/ \\$//;s/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
msvisualcpp)
# Important note: in order to support this mode, a compiler *must*
# always write the preprocessed file to stdout, regardless of -o,
# because we must use -o when running libtool.
"$@" || exit $?
IFS=" "
for arg
do
case "$arg" in
"-Gm"|"/Gm"|"-Gi"|"/Gi"|"-ZI"|"/ZI")
set fnord "$@"
shift
shift
;;
*)
set fnord "$@" "$arg"
shift
shift
;;
esac
done
"$@" -E |
sed -n '/^#line [0-9][0-9]* "\([^"]*\)"/ s::echo "`cygpath -u \\"\1\\"`":p' | sort | uniq > "$tmpdepfile"
rm -f "$depfile"
echo "$object : \\" > "$depfile"
. "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s:: \1 \\:p' >> "$depfile"
echo " " >> "$depfile"
. "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s::\1\::p' >> "$depfile"
rm -f "$tmpdepfile"
;;
none)
exec "$@"
;;
*)
echo "Unknown depmode $depmode" 1>&2
exit 1
;;
esac
exit 0
# Local Variables:
# mode: shell-script
# sh-indentation: 2
# eval: (add-hook 'write-file-hooks 'time-stamp)
# time-stamp-start: "scriptversion="
# time-stamp-format: "%:y-%02m-%02d.%02H"
# time-stamp-end: "$"
# End:
doc/Doxyfile
+36 -30
View File
@@ -3,8 +3,8 @@
#---------------------------------------------------------------------------
# Project related configuration options
#---------------------------------------------------------------------------
PROJECT_NAME = H5hut
PROJECT_NUMBER = 1.9.9
PROJECT_NAME = H5Part
PROJECT_NUMBER = 1.6.1
OUTPUT_DIRECTORY = ./ReferencePages
CREATE_SUBDIRS = NO
OUTPUT_LANGUAGE = English
@@ -35,7 +35,7 @@ INHERIT_DOCS = YES
SEPARATE_MEMBER_PAGES = NO
TAB_SIZE = 8
ALIASES =
OPTIMIZE_OUTPUT_FOR_C = YES
OPTIMIZE_OUTPUT_FOR_C = NO
OPTIMIZE_OUTPUT_JAVA = NO
BUILTIN_STL_SUPPORT = NO
DISTRIBUTE_GROUP_DOC = NO
@@ -57,9 +57,9 @@ CASE_SENSE_NAMES = YES
HIDE_SCOPE_NAMES = NO
SHOW_INCLUDE_FILES = NO
INLINE_INFO = YES
SORT_MEMBER_DOCS = NO
SORT_BRIEF_DOCS = NO
SORT_BY_SCOPE_NAME = NO
SORT_MEMBER_DOCS = YES
SORT_BRIEF_DOCS = YES
SORT_BY_SCOPE_NAME = YES
GENERATE_TODOLIST = YES
GENERATE_TESTLIST = YES
GENERATE_BUGLIST = YES
@@ -67,7 +67,7 @@ GENERATE_DEPRECATEDLIST= YES
ENABLED_SECTIONS =
MAX_INITIALIZER_LINES = 30
SHOW_USED_FILES = NO
SHOW_DIRECTORIES = NO
SHOW_DIRECTORIES = YES
FILE_VERSION_FILTER =
#---------------------------------------------------------------------------
# configuration options related to warning and progress messages
@@ -82,22 +82,28 @@ WARN_LOGFILE =
#---------------------------------------------------------------------------
# configuration options related to the input files
#---------------------------------------------------------------------------
INPUT += H5.dox
INPUT += ../src/h5core/
INPUT += ../src/C/
INPUT += ../src/Fortran/
FILE_PATTERNS =
RECURSIVE = YES
EXCLUDE =
EXCLUDE_SYMLINKS = NO
EXCLUDE_PATTERNS =
EXAMPLE_PATH =
EXAMPLE_PATTERNS = *
EXAMPLE_RECURSIVE = NO
IMAGE_PATH =
INPUT_FILTER =
FILTER_PATTERNS =
FILTER_SOURCE_FILES = NO
INPUT += ../src/H5Part.c
INPUT += ../src/H5PartAttrib.c
INPUT += ../src/H5Block.c
INPUT += ../src/H5BlockReadWrite.c
INPUT += ../src/H5MultiBlock.c
INPUT += ../src/H5MultiBlockReadWrite.c
INPUT += ../src/H5Part.f90
INPUT += ../src/H5PartAttrib.f90
INPUT += ../src/H5Block.f90
INPUT += ../src/H5BlockReadWrite.f90
FILE_PATTERNS =
RECURSIVE = YES
EXCLUDE =
EXCLUDE_SYMLINKS = NO
EXCLUDE_PATTERNS =
EXAMPLE_PATH =
EXAMPLE_PATTERNS = *
EXAMPLE_RECURSIVE = NO
IMAGE_PATH =
INPUT_FILTER =
FILTER_PATTERNS =
FILTER_SOURCE_FILES = NO
#---------------------------------------------------------------------------
# configuration options related to source browsing
#---------------------------------------------------------------------------
@@ -120,8 +126,8 @@ IGNORE_PREFIX =
GENERATE_HTML = YES
HTML_OUTPUT = .
HTML_FILE_EXTENSION = .html
HTML_HEADER =
HTML_FOOTER =
HTML_HEADER =
HTML_FOOTER = doxyfooter
HTML_STYLESHEET =
HTML_ALIGN_MEMBERS = YES
GENERATE_HTMLHELP = NO
@@ -199,7 +205,7 @@ SKIP_FUNCTION_MACROS = YES
#---------------------------------------------------------------------------
# Configuration::additions related to external references
#---------------------------------------------------------------------------
TAGFILES =
TAGFILES =
GENERATE_TAGFILE =
ALLEXTERNALS = NO
EXTERNAL_GROUPS = YES
@@ -208,7 +214,7 @@ PERL_PATH = /usr/bin/perl
# Configuration options related to the dot tool
#---------------------------------------------------------------------------
CLASS_DIAGRAMS = NO
HIDE_UNDOC_RELATIONS = YES
HIDE_UNDOC_RELATIONS = NO
HAVE_DOT = NO
CLASS_GRAPH = NO
COLLABORATION_GRAPH = NO
@@ -218,10 +224,10 @@ TEMPLATE_RELATIONS = NO
INCLUDE_GRAPH = NO
INCLUDED_BY_GRAPH = NO
CALL_GRAPH = NO
GRAPHICAL_HIERARCHY = NO
DIRECTORY_GRAPH = NO
GRAPHICAL_HIERARCHY = YES
DIRECTORY_GRAPH = YES
DOT_IMAGE_FORMAT = png
DOT_PATH =
DOT_PATH =
DOTFILE_DIRS =
MAX_DOT_GRAPH_WIDTH = 1024
MAX_DOT_GRAPH_HEIGHT = 1024
doc/Examples/meshexample.dxf
-47962
View File
File diff suppressed because it is too large Load Diff
doc/Examples/meshexample.txt
-77
View File
@@ -1,77 +0,0 @@
NumLevels: 2
NumVerticesOnLevel: 11 20 29
Vertices:
1 0.0 0.0
2 60.0 -70.0
3 90.0 -10.0
4 140.0 -70.0
5 180.0 -10.0
6 240.0 -60.0
7 220.0 60.0
8 140.0 90.0
9 200.0 120.0
10 130.0 150.0
11 50.0 80.0
12 115.0 40.0
13 95.0 85.0
14 70.0 35.0
15 160.0 -40.0
16 135.0 -10.0
17 115.0 -40.0
18 200.0 25.0
19 180.0 75.0
20 160.0 40.0
21 125.0 15.0
22 112.5 -10.0
23 102.5 15.0
24 147.5 15.0
25 137.5 40.0
26 150.0 65.0
27 127.5 65.0
28 117.5 87.5
29 105.0 62.5
NumElemsOnLevel: 12 24 36
NumElems: 12 28 44
Elements:
ID PID CID VertexIDs Adj Translation Tbl (dim num lvls - 1)
1 -1 -1 1 2 3 2 11 -1 1
2 -1 -1 2 3 4 3 -1 1 2
3 -1 12 3 4 5 4 12 2 -1
4 -1 -1 4 5 6 5 -1 3 3
5 -1 -1 5 7 6 -1 4 6 4
6 -1 17 8 5 7 5 7 12 -1
7 -1 -1 8 9 7 -1 6 8 5
8 -1 -1 10 8 9 7 -1 9 6
9 -1 -1 11 10 8 8 10 -1 7
10 -1 25 11 3 8 12 9 11 -1
11 -1 -1 1 11 3 10 1 -1 8
12 -1 21 3 8 5 6 3 10 -1
13 3 -1 3 14 13 16 21 2 9
14 3 -1 14 4 12 4 16 2 10
15 3 -1 13 12 5 4 23 16 11
16 3 -1 14 13 12 15 14 13 12
17 6 -1 8 17 16 20 5 22 13
18 6 -1 17 5 15 5 20 23 14
19 6 -1 16 15 7 5 7 20 15
20 6 -1 17 16 15 19 18 17 16
21 12 -1 3 18 13 24 13 26 17
22 12 -1 18 8 17 17 24 27 18
23 12 -1 13 17 5 18 15 24 19
24 12 -1 18 13 17 23 22 21 20
25 10 -1 11 20 19 28 9 11 21
26 10 -1 20 3 18 21 28 11 22
27 10 -1 19 18 8 22 9 28 23
28 10 -1 20 3 18 27 26 25 24
3,0 3,1 4,2 2,3 16,4
1 2 -1 3 4
1 2 3
1 3 6
2 11 1 13 14
doc/Examples/simple_tet.vtk
-107
View File
@@ -1,107 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 18 90
4 0 3 2 1
4 0 4 3 1
4 0 5 6 7
4 5 3 8 9
4 6 8 2 10
4 7 9 10 1
4 5 6 7 9
4 5 6 8 9
4 6 7 9 10
4 6 8 9 10
4 0 11 12 13
4 11 5 14 15
4 12 14 6 16
4 13 15 16 7
4 11 12 13 15
4 11 12 14 15
4 12 13 15 16
4 12 14 15 16
CELL_TYPES 18
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 18
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
doc/Examples/simple_tet_level0.vtk
-59
View File
@@ -1,59 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 2 10
4 0 3 2 1
4 0 4 3 1
CELL_TYPES 2
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 2
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
0
1
doc/Examples/simple_tet_level1.vtk
-80
View File
@@ -1,80 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 9 45
4 0 4 3 1
4 0 5 6 7
4 5 3 8 9
4 6 8 2 10
4 7 9 10 1
4 5 6 7 9
4 5 6 8 9
4 6 7 9 10
4 6 8 9 10
CELL_TYPES 9
10
10
10
10
10
10
10
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 9
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
doc/Examples/simple_tet_level2.vtk
-101
View File
@@ -1,101 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 16 80
4 0 4 3 1
4 5 3 8 9
4 6 8 2 10
4 7 9 10 1
4 5 6 7 9
4 5 6 8 9
4 6 7 9 10
4 6 8 9 10
4 0 11 12 13
4 11 5 14 15
4 12 14 6 16
4 13 15 16 7
4 11 12 13 15
4 11 12 14 15
4 12 13 15 16
4 12 14 15 16
CELL_TYPES 16
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 16
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
1
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
doc/Examples/trimesh_dgraph_level0.metis
-13
View File
@@ -1,13 +0,0 @@
12 14
2 11
1 3
2 4 12
3 5
4 6
5 7 12
6 8
7 9
8 10
9 11 12
1 10
3 6 10
doc/Examples/trimesh_dgraph_level0.metis.part.2
-12
View File
@@ -1,12 +0,0 @@
0
1
1
1
1
1
0
0
0
0
0
1
doc/Examples/trimesh_dgraph_level0.metis.part.3
-12
View File
@@ -1,12 +0,0 @@
1
1
2
2
2
0
0
0
0
1
1
2
doc/Examples/trimesh_dnode_level1.metis
-49
View File
@@ -1,49 +0,0 @@
24 35
%1
2 8
%2
1 9 10
%3
4 10 11
%4
3 14 15
%5
6 13 15
%6
5 7
%7
6 21 23
%8
1 21 22
%9
2 12 17
%10
2 3 12
%11
3 12 19
%12
9 10 11
%13
5 16 18
%14
4 16 19
%15
4 5 16
%16
13 14 15
%17
9 20 22
%18
13 20 23
%19
11 14 20
%20
17 18 19
%21
7 8 24
%22
8 17 24
%23
7 18 24
%24
21 22 23
doc/Examples/trimesh_dnode_level1.metis.part.2
-24
View File
@@ -1,24 +0,0 @@
1
1
0
0
0
0
1
1
1
1
0
1
0
0
0
0
1
0
0
0
1
1
1
1
doc/Examples/trimesh_level0.metis
-13
View File
@@ -1,13 +0,0 @@
12 1
1 2 3
2 3 4
3 4 6
4 5 6
5 6 7
6 7 8
7 8 11
8 10 11
8 9 10
3 8 9
1 3 9
3 6 8
doc/Examples/trimesh_level0.metis.epart.2
-12
View File
@@ -1,12 +0,0 @@
1
1
1
1
0
0
0
0
0
0
1
1
doc/Examples/trimesh_level0.metis.ngraph
-12
View File
@@ -1,12 +0,0 @@
11 22
2 3 9
1 3 4
1 2 4 6 8 9
2 3 6 5
4 6 7
3 4 5 7 8
5 6 8 11
6 7 11 10 9 3
8 10 3 1
8 11 9
7 8 10
doc/Examples/trimesh_level0.metis.npart.2
-11
View File
@@ -1,11 +0,0 @@
1
1
1
1
1
0
0
0
0
0
0
doc/Examples/trimesh_level1.metis
-41
View File
@@ -1,41 +0,0 @@
20 43
%1
2 3 11
%2
1 3 4
%3
1 2 14 13 18 20
%4
2 14 12 6
%5
12 6 15 17 13
%6
4 5 7
%7
6 15 16 9
%8
9 10 19 18 17 16
%9
7 8 10
%10
8 9 11
%11
1 20 19 10
%12
4 14 13 5
%13
3 14 12 5 17 18
%14
3 13 12 4
%15
5 17 17 7
%16
7 8 17 15
%17
5 15 16 8 18 13
%18
3 13 17 8 19 20
%19
8 11 20 18
%20
3 18 19 11
doc/Examples/trimesh_level1.metis.part.2
-20
View File
@@ -1,20 +0,0 @@
1
1
1
0
0
0
0
1
1
1
1
0
0
0
0
0
0
1
1
1
doc/H5.dox
-139
View File
@@ -1,139 +0,0 @@
/*!
\mainpage H5hut: A High-Performance I/O Library for Particle-based Simulations
Particle-based simulations running on large high-performance computing systems
over many time steps can generate an enormous amount of particle- and
field-based data for post-processing and analysis. Achieving high-performance
I/O for this data, effectively managing it on disk, and interfacing it with
analysis and visualization tools can be challenging, especially for domain
scientists who do not have I/O and data management expertise. We present the
H5hut library, an implementation of several data models for particle-based
simulations that encapsulates the complexity of HDF5 and is simple to use, yet
does not compromise performance.
Developers:
<UL>
<LI> Andreas Adelmann (PSI) </LI>
<LI> Achim Gsell (PSI) </LI>
<LI> Benedikt Oswald (PSI) </LI>
<LI> Mark Howison (NERSC/LBNL) </LI>
<LI> Prabhat (NERSC/LBNL) </LI>
<LI> Wes Bethel (NERSC/LBNL) </LI>
</UL>
Previous developers:
<UL>
<LI> John Shalf (NERSC/LBNL)</LI>
<LI> Cristina Siegerist (NERSC/LBNL)</LI>
</UL>
For more information, please contact the <a href="mailto:h5part@lists.psi.ch">h5part</a> mailing list.
*/
/*!
\defgroup h5hut_c_api H5hut C API
*/
/*!
\ingroup h5hut_c_api
\defgroup h5hut_file File Handling
*/
/*!
\ingroup h5hut_c_api
\defgroup h5hut_error Error Handling
*/
/*!
\ingroup h5hut_c_api
\defgroup h5hut_model Setting up the Data Model
*/
/*!
\ingroup h5hut_c_api
\defgroup h5hut_attrib Reading and Writing Attributes
*/
/*!
\defgroup h5part_c_api H5Part C API
*/
/*!
\ingroup h5part_c_api
\defgroup h5part_model Setting up the Data Model
*/
/*!
\ingroup h5part_c_api
\defgroup h5part_data Reading and Writing Datasets
*/
/*!
\defgroup h5block_c_api H5Block C API
*/
*/!
\ingroup h5block_c_api
\defgroup h5block_model Setting up the Data Model
*/
\ingroup h5block_c_api
\defgroup h5block_data Reading and Writing Datasets
*/
\ingroup h5block_c_api
\defgroup h5block_attrib Reading and Writing Attributes
*/
/*!
\defgroup h5fed_c_api H5Fed C API
*/
/*!
\defgroup h5hut_f90_api H5hut F90 API
*/
/*!
\ingroup h5hut_f90_api
\defgroup h5hut_file_f File Handling
*/
/*!
\ingroup h5hut_f90_api
\defgroup h5hut_model_f Setting up the Data Model
*/
/*!
\ingroup h5hut_f90_api
\defgroup h5hut_attrib_f Reading and Writing Attributes
!<
/*!
\defgroup h5part_f90_api H5Part F90 API
*/
/*!
\ingroup h5part_f90_api
\defgroup h5part_model_f Setting up the Data Model
*/
/*!
\ingroup h5part_f90_api
\defgroup h5part_data_f Reading and Writing Datasets
*/
/*!
\defgroup h5block_f90_api H5Block F90 API
*/
/*!
\ingroup h5block_f90_api
\defgroup h5block_model_f Setting up the Data Model
*/
/*!
\ingroup h5block_f90_api
\defgroup h5block_data_f Reading and Writing Datasets
*/
/*!
\ingroup h5block_f90_api
\defgroup h5block_attrib_f Reading and Writing Attributes
*/
doc/Makefile.am
+1 -12
View File
@@ -1,13 +1,2 @@
EXTRA_DIST = \
Doxyfile \
H5.dox
all:
doc:
doxydoc:
doxygen
clean:
${RM} -rf ReferencePages TWiki
Doxyfile doxyfooter
doc/doxyheader
-6
View File
@@ -1,6 +0,0 @@
<HTML>
<HEAD>
<TITLE>H5/H5Part/H5Block/H5Fed API</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
doc/html2twiki
-36
View File
@@ -1,36 +0,0 @@
#!/bin/bash
shopt -s nullglob
function html2twiki() {
declare -rx infile=$1
declare -rx outdir=$2
declare -rx fname=$( sed -n 's/.* member="\([a-zA-Z0-9_.]*\)::\([_a-zA-Z0-9]*\)" .*/\2/p' "${infile}" )
declare -rx outfile="${outdir}/${fname}.txt"
grep -q " member=" "${infile}" || return 0
sed '/Generated by/,/anchor/d' "${infile}" > "${outfile}"
}
mkdir -p TWiki/h5_core
mkdir -p TWiki/H5
mkdir -p TWiki/H5Part
mkdir -p TWiki/H5Block
mkdir -p TWiki/H5Fed
for f in ReferencePages/group__h5__core_*.html; do
html2twiki $f TWiki/h5_core
done
for f in ReferencePages/group__h5__c__api_*.html; do
html2twiki $f TWiki/H5
done
for f in ReferencePages/group__h5part__c__api_*.html; do
html2twiki $f TWiki/H5Part
done
for f in ReferencePages/group__h5block__c__api_*.html; do
html2twiki $f TWiki/H5Block
done
for f in ReferencePages/group__h5fed__c__api_*.html; do
html2twiki $f TWiki/H5Fed
done
doc/meshexample.dxf
-6982
View File
File diff suppressed because it is too large Load Diff
doc/tetrahedron_refinements/1-edge/edge_01_refined/01.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.4 KiB

doc/tetrahedron_refinements/1-edge/edge_01_refined/01.pvsm
-1697
View File
File diff suppressed because it is too large Load Diff
doc/tetrahedron_refinements/1-edge/edge_01_refined/01.txt
-10
View File
@@ -1,10 +0,0 @@
TET no. 0:
0.5, 0.5, 0.0
0.0, 0.0, 1.0
0.0, 0.0, 0.0
0.0, 1.0, 0.0
TET no. 1:
0.5, 0.5, 0.0
0.0, 0.0, 0.0
0.0, 0.0, 1.0
1.0, 0.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_01_refined/01.vtk
-25
View File
@@ -1,25 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.5 0.5 0.0
0.0 0.0 1.0
0.0 0.0 0.0
0.0 1.0 0.0
1.0 0.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_01_refined/01_smal.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.0 KiB

doc/tetrahedron_refinements/1-edge/edge_01_refined/01_small.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.0 KiB

doc/tetrahedron_refinements/1-edge/edge_12_refined/12.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.5 KiB

doc/tetrahedron_refinements/1-edge/edge_12_refined/12.pvsm
-2225
View File
File diff suppressed because it is too large Load Diff
doc/tetrahedron_refinements/1-edge/edge_12_refined/12.txt
-10
View File
@@ -1,10 +0,0 @@
TET no. 0:
0.0, 0.5, 0.5
0.0, 0.0, 0.0
1.0, 0.0, 0.0
0.0, 1.0, 0.0
TET no. 1:
0.0, 0.5, 0.5
1.0, 0.0, 0.0
0.0, 0.0, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/1-edge/edge_12_refined/12.vtk
-25
View File
@@ -1,25 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.0 0.5 0.5
0.0 0.0 0.0
1.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_12_refined/12_small.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.1 KiB

doc/tetrahedron_refinements/1-edge/edge_20_refined/20.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.7 KiB

doc/tetrahedron_refinements/1-edge/edge_20_refined/20.pvsm
-2225
View File
File diff suppressed because it is too large Load Diff
doc/tetrahedron_refinements/1-edge/edge_20_refined/20.txt
-10
View File
@@ -1,10 +0,0 @@
TET no. 0:
0.5, 0.0, 0.5
0.0, 0.0, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 1.0
TET no. 1:
0.5, 0.0, 0.5
0.0, 1.0, 0.0
0.0, 0.0, 0.0
1.0, 0.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_20_refined/20.vtk
-25
View File
@@ -1,25 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.5 0.0 0.5
0.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
1.0 0.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_20_refined/20_small.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.9 KiB

doc/tetrahedron_refinements/1-edge/edge_23_refined/23.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.3 KiB

doc/tetrahedron_refinements/1-edge/edge_23_refined/23.pvsm
-2225
View File
File diff suppressed because it is too large Load Diff
doc/tetrahedron_refinements/1-edge/edge_23_refined/23.txt
-10
View File
@@ -1,10 +0,0 @@
TET no. 0:
0.0, 0.0, 0.5
1.0, 0.0, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 0.0
TET no. 1:
0.0, 0.0, 0.5
0.0, 1.0, 0.0
1.0, 0.0, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/1-edge/edge_23_refined/23.vtk
-25
View File
@@ -1,25 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.0 0.0 0.5
1.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 0.0
0.0 0.0 1.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_23_refined/23_small.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.4 KiB

doc/tetrahedron_refinements/1-edge/edge_30_refined/30.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.0 KiB

doc/tetrahedron_refinements/1-edge/edge_30_refined/30.pvsm
-2225
View File
File diff suppressed because it is too large Load Diff
doc/tetrahedron_refinements/1-edge/edge_30_refined/30.txt
-10
View File
@@ -1,10 +0,0 @@
TET no. 0:
0.5, 0.0, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 1.0
0.0, 0.0, 0.0
TET no. 1:
0.5, 0.0, 0.0
0.0, 0.0, 1.0
0.0, 1.0, 0.0
1.0, 0.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_30_refined/30.vtk
-25
View File
@@ -1,25 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.5 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
0.0 0.0 0.0
1.0 0.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_30_refined/30_small.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 7.8 KiB

doc/tetrahedron_refinements/1-edge/edge_31_refined/31.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 9.1 KiB

doc/tetrahedron_refinements/1-edge/edge_31_refined/31.pvsm
-2225
View File
File diff suppressed because it is too large Load Diff
doc/tetrahedron_refinements/1-edge/edge_31_refined/31.txt
-10
View File
@@ -1,10 +0,0 @@
TET no. 0:
0.0, 0.5, 0.0
0.0, 0.0, 1.0
1.0, 0.0, 0.0
0.0, 0.0, 0.0
TET no. 1:
0.0, 0.5, 0.0
1.0, 0.0, 0.0
0.0, 0.0, 1.0
0.0, 1.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_31_refined/31.vtk
-25
View File
@@ -1,25 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.0 0.5 0.0
0.0 0.0 1.0
1.0 0.0 0.0
0.0 0.0 0.0
0.0 1.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_31_refined/31_small.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.7 KiB

doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.8 KiB

doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.pvsm
-1697
View File
File diff suppressed because it is too large Load Diff
doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.txt
-15
View File
@@ -1,15 +0,0 @@
TET no. 0:
0.5, 0.5, 0.0
0.0, 1.0, 0.0
0.0, 0.5, 0.5
0.0, 0.0, 0.0
TET no. 1:
0.0, 0.5, 0.5
1.0, 0.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 0.0
TET no. 2:
1.0, 0.0, 0.0
0.0, 0.5, 0.5
0.0, 0.0, 1.0
0.0, 0.0, 0.0
doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.vtk
-29
View File
@@ -1,29 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
0.5 0.5 0.0
0.0 1.0 0.0
0.0 0.5 0.5
0.0 0.0 0.0
1.0 0.0 0.0
0.0 0.0 1.0
CELLS 3 15
4 0 1 2 3
4 2 4 0 3
4 4 2 5 3
CELL_TYPES 3
10
10
10
CELL_DATA 3
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12_smal.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.5 KiB

doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12_small.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 8.5 KiB

doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 9.6 KiB

doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20.pvsm
-1697
View File
File diff suppressed because it is too large Load Diff
doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20.txt
-15
View File
@@ -1,15 +0,0 @@
TET no. 0:
0.5, 0.0, 0.5
1.0, 0.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 0.0
TET no. 1:
0.5, 0.5, 0.0
0.0, 0.0, 1.0
0.5, 0.0, 0.5
0.0, 0.0, 0.0
TET no. 2:
0.0, 0.0, 1.0
0.5, 0.5, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 0.0
doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20.vtk
-29
View File
@@ -1,29 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
0.5 0.0 0.5
1.0 0.0 0.0
0.5 0.5 0.0
0.0 0.0 0.0
0.0 0.0 1.0
0.0 1.0 0.0
CELLS 3 15
4 0 1 2 3
4 2 4 0 3
4 4 2 5 3
CELL_TYPES 3
10
10
10
CELL_DATA 3
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20_small.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 9.2 KiB

doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 11 KiB

doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23.pvsm
-1697
View File
File diff suppressed because it is too large Load Diff
doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23.txt
-20
View File
@@ -1,20 +0,0 @@
TET no. 0:
1.0, 0.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 0.5
0.0, 0.0, 0.0
TET no. 1:
0.5, 0.5, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 0.5
0.0, 0.0, 0.0
TET no. 2:
0.5, 0.5, 0.0
0.0, 0.0, 0.5
0.0, 1.0, 0.0
0.0, 0.0, 1.0
TET no. 3:
1.0, 0.0, 0.0
0.0, 0.0, 0.5
0.5, 0.5, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23.vtk
-32
View File
@@ -1,32 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
1.0 0.0 0.0
0.5 0.5 0.0
0.0 0.0 0.5
0.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
CELLS 4 20
4 0 1 2 3
4 1 4 2 3
4 1 2 4 5
4 0 2 1 5
CELL_TYPES 4
10
10
10
10
CELL_DATA 4
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
3
doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23_smal.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 12 KiB

doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23_small.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 12 KiB

doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 10 KiB

doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.pvsm
-1697
View File
File diff suppressed because it is too large Load Diff
doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.txt
-15
View File
@@ -1,15 +0,0 @@
TET no. 0:
0.5, 0.5, 0.0
1.0, 0.0, 0.0
0.5, 0.0, 0.0
0.0, 0.0, 1.0
TET no. 1:
0.5, 0.0, 0.0
0.0, 1.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 1.0
TET no. 2:
0.0, 1.0, 0.0
0.5, 0.0, 0.0
0.0, 0.0, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.vtk
-29
View File
@@ -1,29 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
0.5 0.5 0.0
1.0 0.0 0.0
0.5 0.0 0.0
0.0 0.0 1.0
0.0 1.0 0.0
0.0 0.0 0.0
CELLS 3 15
4 0 1 2 3
4 2 4 0 3
4 4 2 5 3
CELL_TYPES 3
10
10
10
CELL_DATA 3
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30_small.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 11 KiB

doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 11 KiB

doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31.pvsm
-1697
View File
File diff suppressed because it is too large Load Diff
doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31.txt
-15
View File
@@ -1,15 +0,0 @@
TET no. 0:
0.0, 0.5, 0.0
0.0, 1.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 1.0
TET no. 1:
0.5, 0.5, 0.0
0.0, 0.0, 0.0
0.0, 0.5, 0.0
0.0, 0.0, 1.0
TET no. 2:
0.0, 0.0, 0.0
0.5, 0.5, 0.0
1.0, 0.0, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31.vtk
-29
View File
@@ -1,29 +0,0 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
0.0 0.5 0.0
0.0 1.0 0.0
0.5 0.5 0.0
0.0 0.0 1.0
0.0 0.0 0.0
1.0 0.0 0.0
CELLS 3 15
4 0 1 2 3
4 2 4 0 3
4 4 2 5 3
CELL_TYPES 3
10
10
10
CELL_DATA 3
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31_small.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 12 KiB

doc/tetrahedron_refinements/2-edges/edge_12-20_refined/12-20.png
BIN
View File
Binary file not shown.
Side by Side

Before

Width:  |  Height:  |  Size: 9.5 KiB

doc/tetrahedron_refinements/2-edges/edge_12-20_refined/12-20.pvsm
-1697
View File
File diff suppressed because it is too large Load Diff
doc/tetrahedron_refinements/2-edges/edge_12-20_refined/12-20.txt
-15
View File
@@ -1,15 +0,0 @@
TET no. 0:
0.0, 0.5, 0.5
0.0, 0.0, 1.0
0.5, 0.0, 0.5
0.0, 0.0, 0.0
TET no. 1:
0.5, 0.0, 0.5
0.0, 1.0, 0.0
0.0, 0.5, 0.5
0.0, 0.0, 0.0
TET no. 2:
0.0, 1.0, 0.0
0.5, 0.0, 0.5
1.0, 0.0, 0.0
0.0, 0.0, 0.0

Some files were not shown because too many files have changed in this diff Show More