3e99a8ccfa
fixed autoconf issue with PGI compilers and #define issue with OpenMPI
2010-05-03 20:04:34 +00:00
bb41cc3288
added documentation for file open flags; added flags to h5pt_openr_par_align(); added H5PartSetViewEmpty() and h5pt_setview_empty() calls for creating empty hyperslab selections (previously kludge was to use H5PartSetViewIndices with a null list); fixed memory leak with file open flags in the Fortran interface; fixed missing statement in 1.6.x logic for _H5Part_have_group()
2010-04-29 16:17:51 +00:00
cf1368291d
fixed the H5PART_HAVE_HDF5_18 logic to work with the 1.9 snapshot; fixed broken test in _H5Part_have_group in the codepath for HDF5 1.6
2010-03-23 22:18:40 +00:00
698b5e0c76
removed config.h.in
2010-03-11 23:04:27 +00:00
ea40b3272e
fixes to lustre optimizations
2010-03-11 23:00:43 +00:00
90f8506628
changed print functions to only print from proc 0 in parallel mode, except for 'debug detail' level which prints from all procs
2010-02-23 19:45:43 +00:00
a7727635a7
reverted the rename of xfer_prop because it is used in OPAL
2010-02-22 21:18:37 +00:00
66476adf6a
removed overloaded use of H5_USE_16_API so that it can be used with HDF 1.85 without invoking the HDF5 1.6 codepath in places
2010-02-22 18:35:37 +00:00
1c4c62192d
added chunking for H5Part; had to remove open object test because out-of-order file handle / property list closes were causing errors
2010-02-18 21:08:03 +00:00
fb660f8459
changed throttling routine; removed read-only restriction for setting step to existing steps; revised NEWS
2010-02-18 18:56:39 +00:00
20bff7f87c
fixes for HDF5 1.6.x
2010-02-17 03:19:20 +00:00
64c2b96f27
incorporated fixes from Gunther for 1.6.0 release
2010-02-16 18:46:57 +00:00
1d23bdab85
1.6 release: moved 1.5 to 1.6; copied 1.6 to tags/H5Part-1.6.0; copied 1.6 to 1.7
2010-02-16 17:06:40 +00:00
0de2f00b08
fixed H5PartGetNumParticles to correctly count indexed views; added type parameter to H5BlockGetFieldInfo/ByName
2010-02-11 22:28:49 +00:00
3300a665b5
updates to makefiles; added CrayXT configure crutch
2010-02-11 19:39:25 +00:00
f671d1ab9f
fixed missing test/testf.F90
2010-02-11 17:42:56 +00:00
ec7184bf2d
fixed missing test/read.c
2010-02-11 17:42:18 +00:00
46574c2482
fixed bug in strided selection; added examples dir with a strided write Fortran program (more examples to come...)
2010-02-11 17:34:50 +00:00
2bb96c6f69
updated NEWS with details about 1.6 changes; changed hsize_t type in H5PartSetViewIndices; fixes to the build system; fixed bugs that were preventing the use of H5PartSetView during writes; added open object checks to regression test
2010-02-10 23:33:32 +00:00
181c03008f
major changes in preparations for 1.6 release: will add details to CHANGES
2010-02-10 01:02:14 +00:00
7c4126c2c8
integrated changes to iterators from Allen; refactored the HDF 1.6 vs. 1.8 API #ifs
2010-01-14 21:25:29 +00:00
90c6032c34
fixed type id leaks found by Allen
2010-01-11 21:29:26 +00:00
f40afd9670
fixed H5Oget_info() bug from Allen
2010-01-11 20:37:05 +00:00
c8b49c520f
fixed attribute read functions to use string type
2010-01-06 00:12:55 +00:00
a65e9586c5
fixed string attribute bug reported by Allen Sanderson
2010-01-05 23:26:23 +00:00
3c6065e2f9
flags are now stored in H5PartFile struct; added the 'throttle' as a runtime parameter instead of a compiler flag; merged H5Bench into the tests suite; compiles but need to perform regression tests
2009-10-16 22:37:20 +00:00
c3cd4d7c99
set collective mode as default for H5Part
2009-10-12 22:13:19 +00:00
fdd69338ea
updated doxygen groups for H5(Multi)Block
2009-10-07 18:12:03 +00:00
5d4d62f5c2
typo in Fortran linkage; fixed doxygen to use parallel flag
2009-10-06 17:58:39 +00:00
195d58693a
added throttling for reading
2009-09-10 04:45:48 +00:00
d149d8a5dd
added write throttling for large concurency jobs with MPI-POSIX VFD
2009-09-10 02:49:59 +00:00
8dac86872b
added a proc shift option to H5MultiBlock, used in I/O benchmarking to defeat caching
2009-08-30 18:02:04 +00:00
15ad7b21c5
added MPI_Comm_f2c in Fortran-C bindings
2009-08-25 17:40:49 +00:00
1b8073b82b
added API calls for int32 and float32 step attribs
2009-08-18 15:47:50 +00:00
06aef8a08f
fixed bug in halo exchange when there is only one proc in the direction of the exchange
2009-07-10 21:34:44 +00:00
57ce44db8b
fixed format flag for H5MultiBlock timing output
2009-07-09 01:36:26 +00:00
1104b9ff93
added timing output for H5MultiBlock reads
2009-07-08 20:14:56 +00:00
01aa167339
changes to _H5Block_init so that only 1 dataset creation plist is created and reused
2009-07-06 21:31:42 +00:00
cd0391db7e
added a test for existing datasets to write calls
2009-07-06 21:07:30 +00:00
207e49716c
Implemented two halo exchange routines: one uses an MPI vector datatype and the other manually packs and unpacks the send and recv buffers. The MPI datatype method is not currently working due to a "double free" error in libc. The manual buffering method has been debuged and works.
2009-07-06 16:42:03 +00:00
97a14cc488
fixed Fortran compile error with gfortran (had to move f90 files to F90)
2009-07-02 18:46:06 +00:00
13d7784c44
added file open flags for Fortran interface
2009-07-02 18:22:30 +00:00
00b0e87f10
forgot to remove existing write attrib functions from H5BlockF.inc and H5BlockF.c after adding them to the code generator
2009-07-02 17:06:12 +00:00
6d38bf442d
* H5Block: added attribute writing functions to code generator: still need to add reading functions
...
* H5MultiBlock: added halo exchange routine: still needs debugging
2009-07-02 16:46:07 +00:00
3d4da8653a
fixed bug with layout debug info always printing the layout for proc 0
2009-06-24 18:45:23 +00:00
0e853656cd
* fixed bug in h5bl_defin3dchunkdims call that was using variables addresses ins
...
* added new MultiBlock module that is used for efficiently loading regular
rectilinear grid blocks (using chunking) and handling ghost zones in a
distributed-memory environment
** still need to add the "halo exchange" routine for reshuffling ghost regions
** performed some basic testing of read/write functionality
~Mark
2009-06-24 18:11:39 +00:00
3d1ed0e92a
found incorrect == comparison with read flag; replaced with &
2009-06-19 22:34:22 +00:00
b5e3756f57
fixed bug in H5Gopen2 where I was using the wrong group id
2009-06-19 18:34:57 +00:00
122e913f08
Merged changes from LBL, including:
...
* read/write call variants for different datatypes
* HDF5 properties tuned for lustre filesystems and the Cray XT (enabled using flags passed during file open)
* HDF5 chunking for field data
* HDF5 alignment (set during file open)
* support for both HDF5 1.6 and 1.8 using #if statements
* a new error reporting level: debug_detail (HDF5 errors are now printed at debug level 1 by default)
These changes have undergone limited testing.
I will begin using this version for my H5Part projects so that I can test it more thoroughly.
~Mark
2009-06-18 20:29:02 +00:00
gsell
a2d2a02cd2
branch new development verson
2008-06-24 19:04:45 +00:00
Marc Howison
gsell