1.6.5 release: Fixed several build errors reported by Iuri Prilepov on Ubuntu 11.04.

NEWS

@@ -1,3 +1,15 @@
+#### H5PART 1.6.5 ############################################################
+
+Fixed several build errors reported by Iuri Prilepov on Ubuntu 11.04.
+
+#### H5PART 1.6.4 ############################################################
+
+Fixed bug where H5PartSetViewIndices was not setting an empty view when the
+number of elements is 0.
+
+Set a threshold on the HDF5 alignment parameter so that small metadata writes
+are not aligned, which causes large gaps in the file.
+
 #### H5PART 1.6.3 ############################################################
 
 New build system uses libtool and can build shared libraries.

configure.ac

@@ -1,6 +1,6 @@
 # Every configure script must call AC_INIT before doing anything else.
 # AC_INIT (package, version, [bug-report], [tarname])
-AC_INIT([H5Part], [1.6.3], [h5part@lists.psi.ch], H5Part)
+AC_INIT([H5Part], [1.6.5], [h5part@lists.psi.ch], H5Part)
 
 # Ensure that a recent enough version of Autoconf is being used. 
 # If the version of Autoconf being used to create configure is earlier than version, 

src/H5MultiBlock.c

@@ -567,10 +567,10 @@ _halo_exchange_buffers (
 	ibufsize = (int)bufsize;
 	if ( (h5part_int64_t)ibufsize != bufsize ) return HANDLE_MPI_INT64_ERR;
 
-	send_buffer = malloc ( bufsize );
+	send_buffer = (char*) malloc ( bufsize );
 	if ( send_buffer == NULL ) return HANDLE_H5PART_NOMEM_ERR;
 
-	recv_buffer = malloc ( bufsize );
+	recv_buffer = (char*) malloc ( bufsize );
 	if ( recv_buffer == NULL ) return HANDLE_H5PART_NOMEM_ERR;
 
 	/* forward */

src/H5Part.c

@@ -291,9 +291,9 @@ _H5Part_open_file (
 
 	if ( align != 0 ) {
 		_H5Part_print_info (
-			"Setting HDF5 alignment to %ld bytes",
+			"Setting HDF5 alignment to %ld bytes with threshold at half that many bytes",
 			align );
-		if (H5Pset_alignment ( f->access_prop, 0, align ) < 0) {
+		if (H5Pset_alignment ( f->access_prop, align/2, align ) < 0) {
 			HANDLE_H5P_SET_FAPL_ERR;
 			goto error_cleanup;
 		}
@@ -2859,9 +2859,9 @@ _set_view_indices (
 	herr = _reset_view ( f );
 	if ( herr < 0 ) return herr;
 
-	if ( indices == NULL || nelems <= 0 ) {
+	if ( indices == NULL || nelems < 0 ) {
 		_H5Part_print_warn (
-			"View indices array is null or size is <= 0: reseting view." );
+			"View indices array is null or size is < 0: reseting view." );
 		return H5PART_SUCCESS;
 	}
 

src/H5Part.h

@@ -16,10 +16,10 @@ extern "C" {
 #include "H5MultiBlock.h"
 #endif
 
-#define H5PART_VER_STRING	"1.6.3"
+#define H5PART_VER_STRING	"1.6.5"
 #define H5PART_VER_MAJOR	1
 #define H5PART_VER_MINOR	6
-#define H5PART_VER_RELEASE	3
+#define H5PART_VER_RELEASE	5
 
 /* error values */
 #define H5PART_SUCCESS		0

src/H5PartPrivate.h

@@ -116,6 +116,24 @@ _H5Part_write_attrib (
 	const hsize_t attrib_nelem
 	);
 
+h5part_int64_t
+_H5Part_write_file_attrib (
+	H5PartFile *f,
+	const char *name,
+	const hid_t type,
+	const void *value,
+	const hsize_t nelem
+	);
+
+h5part_int64_t
+_H5Part_write_step_attrib (
+	H5PartFile *f,
+	const char *name,
+	const hid_t type,
+	const void *value,
+	const hsize_t nelem
+	);
+
 h5part_int64_t
 _H5Part_get_attrib_info (
 	hid_t id,

test/read.c

@@ -1,3 +1,4 @@
+#include <string.h>
 #include <H5Part.h>
 
 #include "testframe.h"

test/testframe.c

@@ -536,7 +536,7 @@ TestPrintf(const char *format, ...)
     int nproc;
     MPI_Comm_rank(MPI_COMM_WORLD, &nproc);
     if ( nproc == 0 || VERBOSE_HI ) {
-	char *format2 = malloc(strlen(format)+8);
+	char *format2 = (char*)malloc(strlen(format)+8);
 	sprintf(format2, "[%d] %s", nproc, format);
 	va_start(arglist, format);
 	ret_value = vprintf(format2, arglist);
@@ -570,7 +570,7 @@ TestErrPrintf(const char *format, ...)
     int nproc;
     MPI_Comm_rank(MPI_COMM_WORLD, &nproc);
     if ( nproc == 0 || VERBOSE_HI ) {
-	char *format2 = malloc(strlen(format)+8);
+	char *format2 = (char*)malloc(strlen(format)+8);
 	sprintf(format2, "[%d] %s", nproc, format);
 	va_start(arglist, format);
 	ret_value = vfprintf(stderr, format2, arglist);

test/testframe.h

@@ -6,6 +6,8 @@
 #ifndef _H5PART_TESTFRAME_H_
 #define _H5PART_TESTFRAME_H_
 
+#include <string.h>
+
 #ifdef PARALLEL_IO
 #define OPEN(file,mode) \
     H5PartOpenFileParallel(file,mode,MPI_COMM_WORLD)