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vonka_j
2026-01-26 16:15:42 +01:00
parent 36073da45b
commit 26d899cc0f
16 changed files with 1426 additions and 1 deletions
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44
analysis-addams.yml Executable file
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# Copy of the analysis-edge.yml with the addition of a SPEC2NEXUS package to read spec files (produced for example at the ADDAMS beamline).
name: analysis_edge
channels:
- conda-forge
dependencies:
# essentials
- python>=3.13 # Frozen to this version, because pyspec is not compatible with newer versions for the moment
- pip
- numpy
- scipy
- pandas
- numba
- matplotlib
- ipython
- jupyterlab
- ipympl
- joblib
- tqdm # sfdata dependency but here given explicitly
- lmfit
- pytest
# useful development packages
- black
- pytest
- h5py # sfdata dependency but here given explicitly
- pint
- line_profiler
- loguru
- pylint
- ipytest # used to be taken from pip, but here we test the conda-forge version
- sqlalchemy # X-ray transmission calculations and similar
- xraydb # X-ray transmission calculations and similar
- scikit-image # Image processing
# and extra control parts
- fabric
# Jupyterlab extensions
- nb_conda_kernels # for discovery of other kernels
# - jupyterlab-drawio
- jupyterlab_code_formatter
# - jupytext # needs to be tested manually
# PSI specific modules
- paulscherrerinstitute::sfdata
# - paulscherrerinstitute::jungfrau_utils # should be a dependency of sfdata, but not listed there explicitly, so t
- pip:
- spec2nexus

0
analysis-esr.yml Normal file → Executable file
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62
analysis-stable.yml Executable file
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# Analysis environment meant to be more stable and a bit behind the 'analysis' environment
name: analysis-stable
channels:
- conda-forge
dependencies:
# essentials
- python=3.12 # keep at 3.12 beause of bitshuffle
- pip
- numpy
- scipy
- pandas
- numba
- matplotlib
- ipython
- jupyterlab
- ipympl
- joblib
- tqdm # sfdata dependency but here given explicitly
- lmfit
- pytest
- bitshuffle=0.5.2=py312h5fdea32_5 # this specific build of bitshuffle works with python 3.12
# for higher versions new build must be found
# useful development packages
- black
- pytest # for testing the cristallina package
- h5py # sfdata dependency but here given explicitly
- pint
- line_profiler
- loguru
- pylint
- ipytest # used to be taken from pip, but here we test the conda-forge version
- sqlalchemy # X-ray transmission calculations and similar
- xraydb # X-ray transmission calculations and similar
- scikit-image # Image processing
- partialjson # For processing unfinished runs
# and extra control parts
- fabric
# Jupyterlab extensions
- nb_conda_kernels # for discovery of other kernels
# - jupyterlab-drawio
- jupyterlab_code_formatter
# - jupytext # needs to be tested manually
# PSI specific modules
- paulscherrerinstitute::sfdata
- paulscherrerinstitute::jungfrau_utils # should be a dependency of sfdata, but not listed there explicitly
- paulscherrerinstitute::data_api
- pip:
- -e /sf/cristallina/applications/cristallina # Creates a "local package" of cristallina .This shows a deprication warning and
# should be changed to using .toml in the future.
# If wanted, jupyterlab_hdf can be added for nicer tables
# pip install jupyterlab_hdf
# jupyter labextension install @jupyterlab/hdf5
## Dependencies
# - colorama # dependency of sfdata
## Probably can be removed
# - astropy # Used for conversion of magnet coordinates, probably not needed any more
# - pyqt # Not sure if it's needed in the analysis env

64
analysis.yml Executable file
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# Analysis environment derived from the same set of packages but using
# the most up-to-date packages from conda-forge.
# Therefore this will follow upstream packages closer but also break from time to time.
# For more conservative use, use 'analysis-stable'
name: analysis
channels:
- conda-forge
dependencies:
# essentials
- python=3.12 # keep at 3.12 beause of bitshuffle
- pip
- numpy
- scipy
- pandas
- numba
- matplotlib
- ipython
- jupyterlab
- ipympl
- joblib
- tqdm # sfdata dependency but here given explicitly
- lmfit
- pytest
- bitshuffle=0.5.2=py312h5fdea32_5 # this specific build of bitshuffle works with python 3.12
# for higher versions new build must be found
# useful development packages
- black
- pytest # for testing the cristallina package
- h5py # sfdata dependency but here given explicitly
- pint
- line_profiler
- loguru
- pylint
- ipytest # used to be taken from pip, but here we test the conda-forge version
- sqlalchemy # X-ray transmission calculations and similar
- xraydb # X-ray transmission calculations and similar
- scikit-image # Image processing
- partialjson # For processing unfinished runs
# and extra control parts
- fabric
# Jupyterlab extensions
- nb_conda_kernels # for discovery of other kernels
# - jupyterlab-drawio
- jupyterlab_code_formatter
# - jupytext # needs to be tested manually
# PSI specific modules
- paulscherrerinstitute::sfdata
- paulscherrerinstitute::jungfrau_utils # should be a dependency of sfdata, but not listed there explicitly
- paulscherrerinstitute::data_api
- pip:
- -e /sf/cristallina/applications/cristallina # Creates a "local package" of cristallina
# If wanted, jupyterlab_hdf can be added for nicer tables
# pip install jupyterlab_hdf
# jupyter labextension install @jupyterlab/hdf5
## Dependencies
# - colorama # dependency of sfdata
## Probably can be removed
# - astropy # Used for conversion of magnet coordinates, probably not needed any more
# - pyqt # Not sure if it's needed in the analysis env

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analysis_edge.yml Executable file
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# The old Analysis-edge environment derived from the same set of packages but using
# the most up-to-date packages from conda-forge. This env will be replaced by 'analysis'
# Therefore this will follow upstream packages closer but also break from time to time.
name: analysis_edge
channels:
- conda-forge
dependencies:
# essentials
- python>=3.11
- pip
- numpy
- scipy
- pandas
- numba
- matplotlib
- ipython
- jupyterlab
- ipympl
- joblib
- tqdm # sfdata dependency but here given explicitly
- lmfit
- pytest
# useful development packages
- black
- pytest
- h5py # sfdata dependency but here given explicitly
- pint
- line_profiler
- loguru
- pylint
- ipytest # used to be taken from pip, but here we test the conda-forge version
- sqlalchemy # X-ray transmission calculations and similar
- xraydb # X-ray transmission calculations and similar
- scikit-image # Image processing
# and extra control parts
- fabric
# Jupyterlab extensions
- nb_conda_kernels # for discovery of other kernels
# - jupyterlab-drawio
- jupyterlab_code_formatter
# - jupytext # needs to be tested manually
# PSI specific modules
- paulscherrerinstitute::sfdata
# - paulscherrerinstitute::jungfrau_utils # should be a dependency of sfdata, but not listed there explicitly, so test
# - pip:
# - ipytest
## Dependencies
# - bitshuffle # dependency of sfdata
# - colorama # dependency of sfdata
## Probably can be removed
# - astropy # Used for conversion of magnet coordinates, probably not needed any more
# - loguru # Not sure if it's needed in the analysis env
# - pyqt # Not sure if it's needed in the analysis env
# still necessary manually afterwards:
# pip install jupyterlab_hdf
# jupyter labextension install @jupyterlab/hdf5

38
diagnostics-crq.yml Executable file
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# the most up-to-date packages from conda-forge.
# Therefore this will follow upstream packages closer but also break from time to time.
name: diagnostics-crq
channels:
- conda-forge
dependencies:
- python=3.12 #mflow / pyzmq still has issues with 3.11
- pip
- numpy
- pandas
- ipython
- ipykernel
# for notebooks into web applications
- voila
- nb_conda_kernels # for discovery of other kernels
# PSI specific modules
- pyepics
# for slic
- paulscherrerinstitute::bsread
- paulscherrerinstitute::cam_server_client
# - paulscherrerinstitute::cta_lib
- paulscherrerinstitute::data_api
- paulscherrerinstitute::elog
- paulscherrerinstitute::jungfrau_utils >=3
- paulscherrerinstitute::sfdata
# terminal
- colorama
- tqdm
- rich
- fuzzywuzzy
- logzero
- yaspin
# slic - local package
- pip:
- -e /sf/cristallina/applications/slic/slic-package

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env_backups/slic-crq.yml Normal file
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name: slic-crq
channels:
- paulscherrerinstitute
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- adwaita-icon-theme=48.0=unix_0
- alsa-lib=1.2.14=hb9d3cd8_0
- argon2-cffi=23.1.0=pyhd8ed1ab_1
- argon2-cffi-bindings=21.2.0=py311h9ecbd09_5
- asttokens=3.0.0=pyhd8ed1ab_1
- at-spi2-atk=2.38.0=h0630a04_3
- at-spi2-core=2.40.3=h0630a04_0
- atk-1.0=2.38.0=h04ea711_2
- attr=2.5.1=h166bdaf_1
- bcrypt=4.3.0=py311h9e33e62_0
- bitshuffle=0.5.2=py311h49a552a_5
- brotli=1.1.0=hb9d3cd8_2
- brotli-bin=1.1.0=hb9d3cd8_2
- brotli-python=1.1.0=py311hfdbb021_2
- bsread=1.5.7=py_0
- bzip2=1.0.8=h4bc722e_7
- c-ares=1.34.5=hb9d3cd8_0
- ca-certificates=2025.4.26=hbd8a1cb_0
- cachannel=3.2.0=py311h41425db_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cairo=1.18.4=h3394656_0
- cam_server_client=5.6.5=py_0
- certifi=2025.1.31=pyhd8ed1ab_0
- cffi=1.17.1=py311hf29c0ef_0
- charset-normalizer=3.4.1=pyhd8ed1ab_0
- click=8.1.8=pyh707e725_0
- colorama=0.4.6=pyhd8ed1ab_1
- comm=0.2.2=pyhd8ed1ab_1
- contourpy=1.3.2=py311hd18a35c_0
- cryptography=44.0.2=py311hafd3f86_0
- cta_lib=1.0.1=py_0
- cycler=0.12.1=pyhd8ed1ab_1
- cyrus-sasl=2.1.27=h54b06d7_7
- data_api=0.8.8=py_0
- dbus=1.13.6=h5008d03_3
- dbus-python=1.3.2=py311hf24dd5a_5
- debugpy=1.8.14=py311hfdbb021_0
- decorator=5.2.1=pyhd8ed1ab_0
- double-conversion=3.3.1=h5888daf_0
- elog=1.3.16=py_0
- epics-base=7.0.7.0=h2dfad98_0
- epoxy=1.5.10=h166bdaf_1
- exceptiongroup=1.2.2=pyhd8ed1ab_1
- executing=2.2.0=pyhd8ed1ab_0
- expat=2.7.0=h5888daf_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_3
- fontconfig=2.15.0=h7e30c49_1
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.57.0=py311h2dc5d0c_0
- freetype=2.13.3=ha770c72_1
- fribidi=1.0.10=h36c2ea0_0
- fuzzywuzzy=0.18.0=pyhd8ed1ab_1
- gdk-pixbuf=2.42.12=hb9ae30d_0
- glib=2.84.1=h07242d1_0
- glib-tools=2.84.1=h4833e2c_0
- graphite2=1.3.13=h59595ed_1003
- gst-plugins-base=1.24.11=h651a532_0
- gstreamer=1.24.11=hc37bda9_0
- gtk3=3.24.43=h0c6a113_5
- h2=4.2.0=pyhd8ed1ab_0
- h5py=3.12.1=nompi_py311h5ed33ec_103
- harfbuzz=11.1.0=h3beb420_0
- hdf5=1.14.4=nompi_h2d575fe_105
- hicolor-icon-theme=0.17=ha770c72_2
- hpack=4.1.0=pyhd8ed1ab_0
- hyperframe=6.1.0=pyhd8ed1ab_0
- icu=75.1=he02047a_0
- idna=3.10=pyhd8ed1ab_1
- importlib-metadata=8.6.1=pyha770c72_0
- importlib_resources=6.5.2=pyhd8ed1ab_0
- ipykernel=6.29.5=pyh3099207_0
- ipympl=0.9.7=pyhd8ed1ab_1
- ipython=9.2.0=pyhfb0248b_0
- ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0
- ipywidgets=8.1.6=pyhd8ed1ab_0
- jedi=0.19.2=pyhd8ed1ab_1
- jungfrau_utils=3.16.0=py_0
- jupyter_client=8.6.3=pyhd8ed1ab_1
- jupyter_core=5.7.2=pyh31011fe_1
- jupyterlab_widgets=3.0.14=pyhd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.7=py311hd18a35c_0
- krb5=1.21.3=h659f571_0
- lcms2=2.17=h717163a_0
- ld_impl_linux-64=2.43=h712a8e2_4
- lerc=4.0.0=h0aef613_1
- levenshtein=0.27.1=py311hfdbb021_0
- libaec=1.1.3=h59595ed_0
- libblas=3.9.0=31_h59b9bed_openblas
- libbrotlicommon=1.1.0=hb9d3cd8_2
- libbrotlidec=1.1.0=hb9d3cd8_2
- libbrotlienc=1.1.0=hb9d3cd8_2
- libcap=2.75=h39aace5_0
- libcblas=3.9.0=31_he106b2a_openblas
- libclang-cpp20.1=20.1.3=default_h1df26ce_0
- libclang13=20.1.3=default_he06ed0a_0
- libcups=2.3.3=h4637d8d_4
- libcurl=8.13.0=h332b0f4_0
- libdeflate=1.23=h86f0d12_0
- libdrm=2.4.124=hb9d3cd8_0
- libedit=3.1.20250104=pl5321h7949ede_0
- libegl=1.7.0=ha4b6fd6_2
- libev=4.33=hd590300_2
- libexpat=2.7.0=h5888daf_0
- libffi=3.4.6=h2dba641_1
- libfreetype=2.13.3=ha770c72_1
- libfreetype6=2.13.3=h48d6fc4_1
- libgcc=14.2.0=h767d61c_2
- libgcc-ng=14.2.0=h69a702a_2
- libgfortran=14.2.0=h69a702a_2
- libgfortran5=14.2.0=hf1ad2bd_2
- libgl=1.7.0=ha4b6fd6_2
- libglib=2.84.1=h2ff4ddf_0
- libglvnd=1.7.0=ha4b6fd6_2
- libglx=1.7.0=ha4b6fd6_2
- libgomp=14.2.0=h767d61c_2
- libiconv=1.18=h4ce23a2_1
- libjpeg-turbo=3.1.0=hb9d3cd8_0
- liblapack=3.9.0=31_h7ac8fdf_openblas
- libllvm20=20.1.3=he9d0ab4_0
- liblzma=5.8.1=hb9d3cd8_0
- libnghttp2=1.64.0=h161d5f1_0
- libnsl=2.0.1=hd590300_0
- libntlm=1.8=hb9d3cd8_0
- libogg=1.3.5=hd0c01bc_1
- libopenblas=0.3.29=pthreads_h94d23a6_0
- libopengl=1.7.0=ha4b6fd6_2
- libopus=1.5.2=hd0c01bc_0
- libpciaccess=0.18=hd590300_0
- libpng=1.6.47=h943b412_0
- libpq=17.4=h27ae623_1
- librsvg=2.58.4=he92a37e_3
- libsodium=1.0.20=h4ab18f5_0
- libsqlite=3.49.1=hee588c1_2
- libssh2=1.11.1=hcf80075_0
- libstdcxx=14.2.0=h8f9b012_2
- libstdcxx-ng=14.2.0=h4852527_2
- libtiff=4.7.0=hd9ff511_4
- libudev1=257.4=hbe16f8c_1
- libusb=1.0.28=hb9d3cd8_0
- libuuid=2.38.1=h0b41bf4_0
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.5.0=h851e524_0
- libxcb=1.17.0=h8a09558_0
- libxcrypt=4.4.36=hd590300_1
- libxkbcommon=1.9.0=h65c71a3_0
- libxml2=2.13.7=h4bc477f_1
- libxslt=1.1.39=h76b75d6_0
- libzlib=1.3.1=hb9d3cd8_2
- llvmlite=0.44.0=py311h9c9ff8c_1
- loguru=0.7.2=py311h38be061_2
- logzero=1.7.0=py311h38be061_6
- lxml=5.4.0=py311hbd2c71b_0
- markdown-it-py=3.0.0=pyhd8ed1ab_1
- matplotlib=3.10.1=py311h38be061_0
- matplotlib-base=3.10.1=py311h2b939e6_0
- matplotlib-inline=0.1.7=pyhd8ed1ab_1
- mdurl=0.1.2=pyhd8ed1ab_1
- mesalib=25.0.4=hfd93750_1
- mflow=0.2.0=pyh39e3cac_2
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=9.2.0=h266115a_0
- mysql-libs=9.2.0=he0572af_0
- ncurses=6.5=h2d0b736_3
- nest-asyncio=1.6.0=pyhd8ed1ab_1
- numba=0.61.2=py311h4e1c48f_0
- numpy=2.2.5=py311h5d046bc_0
- openjpeg=2.5.3=h5fbd93e_0
- openldap=2.6.9=he970967_0
- openssl=3.5.0=h7b32b05_0
- packaging=25.0=pyh29332c3_1
- pandas=2.2.3=py311h7db5c69_3
- pango=1.56.3=h9ac818e_1
- parso=0.8.4=pyhd8ed1ab_1
- partialjson=0.0.8=pyhd8ed1ab_1
- passlib=1.7.4=pyhd8ed1ab_2
- pcre2=10.44=hba22ea6_2
- perl=5.32.1=7_hd590300_perl5
- pexpect=4.9.0=pyhd8ed1ab_1
- pickleshare=0.7.5=pyhd8ed1ab_1004
- pillow=11.1.0=py311h1322bbf_0
- pip=25.1=pyh8b19718_0
- pixman=0.44.2=h29eaf8c_0
- platformdirs=4.3.7=pyh29332c3_0
- playsound=1.3.0=pyhd8ed1ab_1
- prompt-toolkit=3.0.51=pyha770c72_0
- psutil=7.0.0=py311h9ecbd09_0
- pthread-stubs=0.4=hb9d3cd8_1002
- ptyprocess=0.7.0=pyhd8ed1ab_1
- pure_eval=0.2.3=pyhd8ed1ab_1
- pycparser=2.22=pyh29332c3_1
- pyepics=3.5.7=py311h38be061_1
- pygments=2.19.1=pyhd8ed1ab_0
- pyparsing=3.2.3=pyhd8ed1ab_1
- pyserial=3.5=pyhd8ed1ab_1
- pyside6=6.9.0=py311h9053184_0
- pysocks=1.7.1=pyha55dd90_7
- python=3.11.12=h9e4cc4f_0_cpython
- python-dateutil=2.9.0.post0=pyhff2d567_1
- python-levenshtein=0.27.1=pyhff2d567_0
- python-tzdata=2025.2=pyhd8ed1ab_0
- python_abi=3.11=7_cp311
- pytz=2025.2=pyhd8ed1ab_0
- pyusb=1.3.1=pyhd8ed1ab_0
- pyvisa=1.14.1=pyhd8ed1ab_1
- pyvisa-py=0.7.2=pyhd8ed1ab_1
- pyzmq=26.4.0=py311h7deb3e3_0
- qhull=2020.2=h434a139_5
- qt6-main=6.9.0=h6441bc3_1
- rapidfuzz=3.13.0=py311hfdbb021_0
- readline=8.2=h8c095d6_2
- requests=2.32.3=pyhd8ed1ab_1
- rich=14.0.0=pyh29332c3_0
- scipy=1.15.2=py311h8f841c2_0
- setuptools=79.0.1=pyhff2d567_0
- sfdata=0.4.1=py_0
- six=1.17.0=pyhd8ed1ab_0
- spirv-tools=2025.1=h84d6215_0
- stack_data=0.6.3=pyhd8ed1ab_1
- termcolor=2.3.0=pyhd8ed1ab_0
- tk=8.6.13=noxft_h4845f30_101
- tornado=6.4.2=py311h9ecbd09_0
- tqdm=4.67.1=pyhd8ed1ab_1
- traitlets=5.14.3=pyhd8ed1ab_1
- typing-extensions=4.13.2=h0e9735f_0
- typing_extensions=4.13.2=pyh29332c3_0
- tzdata=2025b=h78e105d_0
- unicodedata2=16.0.0=py311h9ecbd09_0
- urllib3=2.4.0=pyhd8ed1ab_0
- wayland=1.23.1=h3e06ad9_1
- wcwidth=0.2.13=pyhd8ed1ab_1
- wheel=0.45.1=pyhd8ed1ab_1
- widgetsnbextension=4.0.14=pyhd8ed1ab_0
- wxpython=4.2.3=py311h552b8c3_0
- wxwidgets=3.2.7=hba9cfa6_0
- xarray=2025.3.1=pyhd8ed1ab_0
- xcb-util=0.4.1=hb711507_2
- xcb-util-cursor=0.1.5=hb9d3cd8_0
- xcb-util-image=0.4.0=hb711507_2
- xcb-util-keysyms=0.4.1=hb711507_0
- xcb-util-renderutil=0.3.10=hb711507_0
- xcb-util-wm=0.4.2=hb711507_0
- xkeyboard-config=2.44=hb9d3cd8_0
- xorg-libice=1.1.2=hb9d3cd8_0
- xorg-libsm=1.2.6=he73a12e_0
- xorg-libx11=1.8.12=h4f16b4b_0
- xorg-libxau=1.0.12=hb9d3cd8_0
- xorg-libxcomposite=0.4.6=hb9d3cd8_2
- xorg-libxcursor=1.2.3=hb9d3cd8_0
- xorg-libxdamage=1.1.6=hb9d3cd8_0
- xorg-libxdmcp=1.1.5=hb9d3cd8_0
- xorg-libxext=1.3.6=hb9d3cd8_0
- xorg-libxfixes=6.0.1=hb9d3cd8_0
- xorg-libxi=1.8.2=hb9d3cd8_0
- xorg-libxinerama=1.1.5=h5888daf_1
- xorg-libxrandr=1.5.4=hb9d3cd8_0
- xorg-libxrender=0.9.12=hb9d3cd8_0
- xorg-libxshmfence=1.3.3=hb9d3cd8_0
- xorg-libxtst=1.2.5=hb9d3cd8_3
- xorg-libxxf86vm=1.1.6=hb9d3cd8_0
- yaspin=3.1.0=pyhd8ed1ab_0
- zeromq=4.3.5=h3b0a872_7
- zipp=3.21.0=pyhd8ed1ab_1
- zstandard=0.23.0=py311h9ecbd09_2
- zstd=1.5.7=hb8e6e7a_2
prefix: /sf/cristallina/applications/it/envs/slic-crq

413
env_backups/slic.yml Normal file
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name: slic
channels:
- file:///gfa/.mounts/sf_cristallina/applications/conda/envs/cta/conda-bld
- paulscherrerinstitute
- defaults
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=6_kmp_llvm
- aiofiles=24.1.0=pyhd8ed1ab_1
- aiosqlite=0.21.0=pyhaa4b35c_0
- alsa-lib=1.2.3.2=h166bdaf_0
- anyio=4.10.0=pyhe01879c_0
- aom=3.5.0=h27087fc_0
- argon2-cffi-bindings=25.1.0=py39hd399759_0
- arrow=1.3.0=pyhd8ed1ab_1
- async-lru=2.0.5=pyh29332c3_0
- atk-1.0=2.38.0=h04ea711_2
- attr=2.5.2=h39aace5_0
- attrs=25.3.0=pyh71513ae_0
- babel=2.17.0=pyhd8ed1ab_0
- backcall=0.2.0=pyhd3eb1b0_0
- bcrypt=4.3.0=py39h20260ba_1
- beautifulsoup4=4.13.4=pyha770c72_0
- black=25.1.0=pyha5154f8_0
- blas=1.0=mkl
- bleach-with-css=6.2.0=h82add2a_4
- blosc=1.21.5=h0f2a231_0
- bottleneck=1.5.0=py39hf3d9206_0
- brotli=1.0.9=h166bdaf_9
- brotli-bin=1.0.9=h166bdaf_9
- brotli-python=1.0.9=py39h5a03fae_9
- brotlipy=0.7.0=py39h8cd3c5a_1007
- brunsli=0.1=h2531618_0
- bzip2=1.0.8=hda65f42_8
- c-ares=1.34.5=hb9d3cd8_0
- c-blosc2=2.12.0=hb4ffafa_0
- ca-certificates=2025.11.12=hbd8a1cb_0
- cachannel=3.2.0=py39hb93dfd8_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cairo=1.16.0=ha12eb4b_1010
- cam_server=5.3.1=py39_0
- cam_server_client=5.6.5=py_0
- certifi=2025.8.3=pyhd8ed1ab_0
- cffi=1.17.1=py39h1fdaa30_0
- cfitsio=4.2.0=hd9d235c_0
- charls=2.4.2=h59595ed_0
- cheroot=10.0.1=pyhd8ed1ab_1
- click=8.1.8=pyh707e725_0
- cloudpickle=3.1.1=pyhd8ed1ab_0
- colorama=0.4.6=pyhd8ed1ab_1
- comm=0.2.3=pyhe01879c_0
- commonmark=0.9.1=pyhd3eb1b0_0
- contourpy=1.3.0=py39h74842e3_2
- cryptography=45.0.6=py39hb2f7f84_0
- cta_lib=1.0.5=py39_0
- cytoolz=1.0.1=py39h8cd3c5a_0
- dask-core=2024.8.0=pyhd8ed1ab_0
- data_api=0.8.8=py_0
- dataclasses=0.8=pyh6d0b6a4_7
- dav1d=1.2.1=h5eee18b_0
- dbus=1.13.18=hb2f20db_0
- dbus-python=1.3.2=py39h1c6aa96_4
- debugpy=1.8.16=py39haef64b4_0
- defusedxml=0.7.1=pyhd3eb1b0_0
- elog=1.3.16=py_0
- entrypoints=0.4=pyhd8ed1ab_1
- epics-base=7.0.9.0=pl5321h2669dad_9
- exceptiongroup=1.3.0=pyhd8ed1ab_0
- expat=2.7.3=hecca717_0
- flit-core=3.12.0=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_3
- fontconfig=2.14.2=h14ed4e7_0
- fonts-anaconda=1=h8fa9717_0
- fonts-conda-ecosystem=1=hd3eb1b0_0
- fonttools=4.59.1=py39heb7d2ae_0
- fqdn=1.5.1=pyhd8ed1ab_1
- freetype=2.12.1=h267a509_2
- fribidi=1.0.16=hb03c661_0
- fsspec=2025.7.0=pyhd8ed1ab_0
- future=1.0.0=pyhd8ed1ab_2
- fuzzywuzzy=0.18.0=pyhd8ed1ab_1
- gdk-pixbuf=2.42.10=h5eee18b_1
- gettext=0.25.1=h3f43e3d_1
- gettext-tools=0.25.1=h3f43e3d_1
- giflib=5.2.2=h5eee18b_0
- glib=2.80.2=hf974151_0
- glib-tools=2.80.2=hb6ce0ca_0
- gmp=6.3.0=hac33072_2
- gobject-introspection=1.78.1=py39h42194e9_1
- graphite2=1.3.14=hecca717_2
- gst-plugins-base=1.20.2=hcf0ee16_0
- gstreamer=1.20.3=hd4edc92_2
- gtk2=2.24.33=h73c1081_2
- h11=0.16.0=pyhd8ed1ab_0
- h2=4.2.0=pyhd8ed1ab_0
- h5py=3.13.0=nompi_py39h30a5a8d_100
- harfbuzz=4.2.0=h40b6f09_0
- hdf5=1.14.3=nompi_hdf9ad27_105
- hpack=4.1.0=pyhd8ed1ab_0
- httpcore=1.0.9=pyh29332c3_0
- httpx=0.28.1=pyhd8ed1ab_0
- hyperframe=6.1.0=pyhd8ed1ab_0
- icu=69.1=h9c3ff4c_0
- idna=3.10=pyhd8ed1ab_1
- imagecodecs=2023.1.23=py39hd061359_0
- imageio=2.37.0=pyhfb79c49_0
- importlib-metadata=8.7.0=pyhe01879c_1
- importlib-resources=6.5.2=pyhd8ed1ab_0
- importlib_metadata=8.7.0=h40b2b14_1
- importlib_resources=6.5.2=pyhd8ed1ab_0
- intel-openmp=2023.1.0=hdb19cb5_46306
- ipykernel=6.30.1=pyh82676e8_0
- ipython=8.18.1=pyh707e725_3
- ipython_genutils=0.2.0=pyhd8ed1ab_2
- ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0
- ipywidgets=8.1.7=pyhd8ed1ab_0
- isoduration=20.11.0=pyhd8ed1ab_1
- jaraco.functools=4.3.0=pyhd8ed1ab_0
- jbig=2.1=h7f98852_2003
- jedi=0.19.2=pyhd8ed1ab_1
- jinja2=3.1.6=pyhd8ed1ab_0
- jpeg=9e=h5eee18b_3
- jsonpointer=3.0.0=py39hf3d152e_1
- jupyter_client=8.6.3=pyhd8ed1ab_1
- jupyter_core=5.8.1=pyh31011fe_0
- jupyter_ydoc=3.1.0=pyhe01879c_0
- jupyterlab_pygments=0.3.0=pyhd8ed1ab_2
- jupyterlab_widgets=3.0.15=pyhd8ed1ab_0
- jxrlib=1.1=hd590300_3
- keyutils=1.6.3=hb9d3cd8_0
- kiwisolver=1.4.7=py39h74842e3_0
- krb5=1.21.3=h143b758_0
- lark=1.2.2=pyhd8ed1ab_1
- lazy-loader=0.4=pyhd8ed1ab_2
- lazy_loader=0.4=pyhd8ed1ab_2
- lcms2=2.15=hfd0df8a_0
- ld_impl_linux-64=2.45=bootstrap_ha15bf96_4
- lerc=4.0.0=h0aef613_1
- levenshtein=0.27.1=py39hf88036b_0
- libaec=1.1.4=h3f801dc_0
- libasprintf=0.25.1=h3f43e3d_1
- libasprintf-devel=0.25.1=h3f43e3d_1
- libavif=0.11.1=h8182462_2
- libblas=3.9.0=20_linux64_mkl
- libbrotlicommon=1.0.9=h166bdaf_9
- libbrotlidec=1.0.9=h166bdaf_9
- libbrotlienc=1.0.9=h166bdaf_9
- libcap=2.77=h3ff7636_0
- libcblas=3.9.0=20_linux64_mkl
- libclang=13.0.1=default_hb5137d0_10
- libcurl=8.8.0=hca28451_1
- libdeflate=1.17=h5eee18b_1
- libedit=3.1.20250104=pl5321h7949ede_0
- libev=4.33=hd590300_2
- libevent=2.1.10=h28343ad_4
- libexpat=2.7.3=hecca717_0
- libffi=3.4.6=h2dba641_1
- libgcc=15.2.0=he0feb66_12
- libgcc-ng=15.2.0=h69a702a_12
- libgettextpo=0.25.1=h3f43e3d_1
- libgettextpo-devel=0.25.1=h3f43e3d_1
- libgfortran-ng=7.5.0=h14aa051_20
- libgfortran4=7.5.0=h14aa051_20
- libgfortran5=15.2.0=h68bc16d_12
- libgirepository=1.78.1=h003a4f0_1
- libglib=2.80.2=hf974151_0
- libglu=9.0.3=h5888daf_1
- libglvnd=1.7.0=ha4b6fd6_2
- libgomp=15.2.0=he0feb66_12
- libiconv=1.18=h3b78370_2
- liblapack=3.9.0=20_linux64_mkl
- libllvm11=11.1.0=h9e868ea_6
- libllvm13=13.0.1=hf817b99_2
- libllvm14=14.0.6=hecde1de_4
- liblzma=5.8.1=hb9d3cd8_2
- liblzma-devel=5.8.1=hb9d3cd8_2
- libnghttp2=1.58.0=h47da74e_1
- libnsl=2.0.1=hb9d3cd8_1
- libogg=1.3.5=h27cfd23_1
- libopenblas=0.3.28=pthreads_h94d23a6_0
- libopengl=1.7.0=ha4b6fd6_2
- libopus=1.5.2=hd0c01bc_0
- libpng=1.6.43=h2797004_0
- libpq=14.5=hfc447b1_7
- libsodium=1.0.20=h4ab18f5_0
- libsqlite=3.46.0=hde9e2c9_0
- libssh2=1.11.0=h0841786_0
- libstdcxx=15.2.0=h934c35e_12
- libstdcxx-ng=15.2.0=hdf11a46_12
- libtiff=4.5.0=h6adf6a1_2
- libudev1=257.10=hd0affe5_2
- libusb=1.0.29=h73b1eb8_0
- libuuid=2.41.2=he9a06e4_0
- libvorbis=1.3.7=h54a6638_2
- libwebp=1.3.2=h11a3e52_0
- libwebp-base=1.3.2=h5eee18b_1
- libxcb=1.13=h7f98852_1004
- libxcrypt=4.4.36=hd590300_1
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.9.14=haae042b_4
- libxslt=1.1.33=h0ef7038_3
- libzlib=1.2.13=h4ab18f5_6
- libzopfli=1.0.3=he6710b0_0
- llvm-openmp=20.1.8=h4922eb0_0
- llvmlite=0.43.0=py39h6a678d5_0
- locket=1.0.0=py39h06a4308_0
- loguru=0.7.3=pyh707e725_0
- logzero=1.7.0=py39hf3d152e_6
- lxml=4.8.0=py39hb9d737c_3
- lz4-c=1.9.4=h6a678d5_1
- markdown-it-py=3.0.0=pyhd8ed1ab_1
- markupsafe=3.0.2=py39h9399b63_1
- matplotlib=3.9.2=py39h06a4308_0
- matplotlib-base=3.9.2=py39h16632d1_2
- matplotlib-inline=0.1.7=pyhd8ed1ab_1
- mdurl=0.1.2=pyhd8ed1ab_1
- mflow=0.2.0=pyh39e3cac_2
- mistune=3.1.3=pyh29332c3_0
- mkl=2023.2.0=ha770c72_50498
- mkl-service=2.4.1=py39h5af75a1_1
- mkl_fft=1.3.10=py39h191f12f_1
- mkl_random=1.2.8=py39hafd1009_0
- more-itertools=10.7.0=pyhd8ed1ab_0
- mypy_extensions=1.1.0=pyha770c72_0
- mysql-common=8.0.33=hf1915f5_6
- mysql-libs=8.0.33=hca2cd23_6
- ncurses=6.5=h2d0b736_3
- nest-asyncio=1.6.0=pyhd8ed1ab_1
- networkx=3.2.1=py39h06a4308_0
- ninja=1.13.2=h171cf75_0
- ninja-base=1.10.2=hd09550d_5
- nspr=4.38=h29cc59b_0
- nss=3.100=hca3bf56_0
- numba=0.60.0=py39h0320e7d_0
- numexpr=2.10.1=mkl_py39h4145518_2
- numpy=1.26.4=py39h5f9d8c6_0
- numpy-base=1.26.4=py39hb5e798b_0
- openjpeg=2.5.2=he7f1fd0_0
- openssl=3.6.0=h26f9b46_0
- overrides=7.7.0=pyhd8ed1ab_1
- packaging=25.0=pyh29332c3_1
- pandas=2.2.3=py39h3b40f6f_1
- pandoc=3.8.2.1=ha770c72_0
- pandocfilters=1.5.0=pyhd3eb1b0_0
- pango=1.50.7=hbd2fdc8_0
- partd=1.4.2=pyhd8ed1ab_0
- paste=3.10.1=pyhd8ed1ab_1
- pathlib2=2.3.7.post1=py39hf3d152e_4
- pathspec=0.12.1=pyhd8ed1ab_1
- pcre=8.45=h295c915_0
- pcre2=10.43=hcad00b1_0
- perl=5.32.1=7_hd590300_perl5
- pickleshare=0.7.5=pyhd8ed1ab_1004
- pillow=10.4.0=py39h5eee18b_0
- pip=25.2=pyh8b19718_0
- pixman=0.46.4=h54a6638_1
- platformdirs=4.3.8=pyhe01879c_0
- prometheus_client=0.22.1=pyhd8ed1ab_0
- prompt-toolkit=3.0.51=pyha770c72_0
- prompt_toolkit=3.0.51=hd8ed1ab_0
- psutil=7.0.0=py39h8cd3c5a_0
- pthread-stubs=0.4=hb9d3cd8_1002
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pure_eval=0.2.3=pyhd8ed1ab_1
- pybind11-abi=11=hc364b38_1
- pycairo=1.25.0=py39hc92de75_1
- pycrdt=0.12.27=py39h2bddf42_0
- pycrdt-websocket=0.15.5=pyhd8ed1ab_0
- pyepics=3.5.8=py39hf3d152e_0
- pygments=2.19.2=pyhd8ed1ab_0
- pygobject=3.46.0=py39hb25b1be_1
- pyopenssl=25.1.0=pyhd8ed1ab_0
- pyparsing=3.2.3=pyhe01879c_2
- pypubsub=4.0.3=pyhd8ed1ab_1
- pyqt=5.12.3=py39hf3d152e_8
- pyqt-impl=5.12.3=py39hde8b62d_8
- pyqt5-sip=4.19.18=py39he80948d_8
- pyqtchart=5.12=py39h0fcd23e_8
- pyqtwebengine=5.12.1=py39h0fcd23e_8
- pyro5=5.15=pyhd8ed1ab_1
- pyrsistent=0.20.0=py39h8cd3c5a_1
- pyserial=3.5=pyhd8ed1ab_1
- pysocks=1.7.1=pyha55dd90_7
- python=3.9.19=h0755675_0_cpython
- python-dateutil=2.9.0post0=py39h06a4308_2
- python-fastjsonschema=2.21.2=pyhe01879c_0
- python-json-logger=2.0.7=py39h06a4308_0
- python-levenshtein=0.27.1=pyhff2d567_0
- python-tzdata=2025.2=pyhd8ed1ab_0
- python_abi=3.9=8_cp39
- pytz=2024.1=py39h06a4308_0
- pyvisa=1.14.1=pyhd8ed1ab_1
- pyvisa-py=0.7.2=pyhd8ed1ab_1
- pywavelets=1.6.0=py39hd92a3bb_0
- pyyaml=6.0.2=py39h9399b63_2
- pyzmq=27.0.2=py39haa5fa38_0
- qhull=2020.2=h434a139_5
- qt=5.12.9=h1304e3e_6
- qtpy=2.4.3=pyhd8ed1ab_1
- rapidfuzz=3.13.0=py39hf88036b_0
- readline=8.2=h8c095d6_2
- referencing=0.36.2=pyh29332c3_0
- regex=2025.7.34=py39hd399759_0
- requests=2.32.5=pyhd8ed1ab_0
- rfc3339-validator=0.1.4=pyhd8ed1ab_1
- rfc3986-validator=0.1.1=py39h06a4308_0
- rfc3987-syntax=1.1.0=pyhe01879c_1
- rich=14.1.0=pyhe01879c_0
- rpds-py=0.27.0=py39h17f49b6_0
- scipy=1.13.1=py39haf93ffa_0
- send2trash=1.8.3=pyh0d859eb_1
- serpent=1.41=pyhd8ed1ab_1
- setuptools=80.9.0=pyhff2d567_0
- snappy=1.1.10=hdb0a2a9_1
- sniffio=1.3.1=pyhd8ed1ab_1
- sortedcontainers=2.4.0=pyhd8ed1ab_1
- soupsieve=2.7=pyhd8ed1ab_0
- sqlite=3.46.0=h6d4b2fc_0
- sqlite-anyio=0.2.3=pyhaa4b35c_1
- stack_data=0.6.3=pyhd8ed1ab_1
- tbb=2021.8.0=hdb19cb5_0
- termcolor=3.1.0=pyhd8ed1ab_0
- terminado=0.18.1=pyh0d859eb_0
- tifffile=2023.8.12=pyhd8ed1ab_0
- tinycss2=1.4.0=pyhd8ed1ab_0
- tk=8.6.14=h39e8969_0
- toml=0.10.2=pyhd8ed1ab_1
- tomli=2.2.1=pyhe01879c_2
- toolz=1.0.0=pyhd8ed1ab_1
- tornado=6.5.2=py39hd399759_0
- tqdm=4.67.1=pyhd8ed1ab_1
- traitlets=5.14.3=pyhd8ed1ab_1
- trio=0.30.0=py39hf3d152e_0
- typed-ast=1.5.5=py39hd1e30aa_1
- types-python-dateutil=2.9.0.20250809=pyhd8ed1ab_0
- typing-extensions=4.14.1=h4440ef1_0
- typing_extensions=4.14.1=pyhe01879c_0
- typing_utils=0.1.0=pyhd8ed1ab_1
- tzdata=2025b=h78e105d_0
- unicodedata2=16.0.0=py39h8cd3c5a_0
- uri-template=1.3.0=pyhd8ed1ab_1
- urllib3=2.5.0=pyhd8ed1ab_0
- webcolors=24.11.1=pyhd8ed1ab_0
- webencodings=0.5.1=pyhd8ed1ab_3
- websocket-client=1.8.0=pyhd8ed1ab_1
- wheel=0.45.1=pyhd8ed1ab_1
- widgetsnbextension=4.0.14=pyhd8ed1ab_0
- wxpython=4.1.1=py39hea8757a_7
- xorg-kbproto=1.0.7=hb9d3cd8_1003
- xorg-libice=1.1.2=hb9d3cd8_0
- xorg-libsm=1.2.6=he73a12e_0
- xorg-libx11=1.8.4=h0b41bf4_0
- xorg-libxau=1.0.12=hb03c661_1
- xorg-libxdmcp=1.1.5=hb03c661_1
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-renderproto=0.11.1=hb9d3cd8_1003
- xorg-xextproto=7.3.0=hb9d3cd8_1004
- xorg-xproto=7.0.31=hb9d3cd8_1008
- xz=5.8.1=hbcc6ac9_2
- xz-gpl-tools=5.8.1=hbcc6ac9_2
- xz-tools=5.8.1=hb9d3cd8_2
- y-py=0.6.2=py39he612d8f_1
- yaml=0.2.5=h280c20c_3
- ypy-websocket=0.12.4=pyhd8ed1ab_1
- zeromq=4.3.5=h387f397_9
- zfp=1.0.1=h909a3a2_3
- zipp=3.23.0=pyhd8ed1ab_0
- zlib=1.2.13=h4ab18f5_6
- zlib-ng=2.0.7=h0b41bf4_0
- zstandard=0.23.0=py39hd399759_3
- zstd=1.5.6=ha6fb4c9_0
- pip:
- appdirs==1.4.4
- argon2-cffi==21.3.0
- asttokens==2.0.5
- bitshuffle==0.5.2
- bleach==4.1.0
- bottle==0.12.19
- bsread==1.5.7
- charset-normalizer==3.3.2
- cycler==0.11.0
- cython==3.2.1
- decorator==5.1.1
- executing==0.8.3
- ipympl==0.9.3
- jaraco-functools==3.3.0
- json5==0.9.6
- jungfrau-utils==3.15.6
- jupyterlab-pygments==0.1.2
- mlzlog==0.3.5
- munkres==1.1.4
- nbconvert==7.16.4
- outcome==1.1.0
- parso==0.8.3
- passlib==1.7.4
- pexpect==4.8.0
- playaudio==1.0.5
- playsound==1.3.0
- pure-eval==0.2.2
- pycparser==2.21
- pyusb==1.2.1
- six==1.16.0
- stack-data==0.2.0
- stand==0.1
- wcwidth==0.2.5
- yaspin==2.2.0
prefix: /sf/cristallina/applications/conda/envs/slic

268
env_backups/slic2.yml Normal file
View File

@@ -0,0 +1,268 @@
name: slic2
channels:
- paulscherrerinstitute
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- adwaita-icon-theme=48.0=unix_0
- alsa-lib=1.2.13=hb9d3cd8_0
- argon2-cffi=23.1.0=pyhd8ed1ab_1
- argon2-cffi-bindings=21.2.0=py311h9ecbd09_5
- asttokens=3.0.0=pyhd8ed1ab_1
- at-spi2-atk=2.38.0=h0630a04_3
- at-spi2-core=2.40.3=h0630a04_0
- atk-1.0=2.38.0=h04ea711_2
- attr=2.5.1=h166bdaf_1
- bcrypt=4.3.0=py311h9e33e62_0
- bitshuffle=0.5.2=py311he0e6697_5
- brotli=1.1.0=hb9d3cd8_2
- brotli-bin=1.1.0=hb9d3cd8_2
- brotli-python=1.1.0=py311hfdbb021_2
- bsread=1.5.7=py_0
- bzip2=1.0.8=h4bc722e_7
- c-ares=1.34.4=hb9d3cd8_0
- ca-certificates=2025.1.31=hbcca054_0
- cachannel=3.2.0=py311h41425db_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cairo=1.18.4=h3394656_0
- certifi=2025.1.31=pyhd8ed1ab_0
- cffi=1.17.1=py311hf29c0ef_0
- charset-normalizer=3.4.1=pyhd8ed1ab_0
- click=8.1.8=pyh707e725_0
- colorama=0.4.6=pyhd8ed1ab_1
- comm=0.2.2=pyhd8ed1ab_1
- contourpy=1.3.1=py311hd18a35c_0
- cryptography=44.0.2=py311hafd3f86_0
- cycler=0.12.1=pyhd8ed1ab_1
- cyrus-sasl=2.1.27=h54b06d7_7
- data_api=0.8.8=py_0
- dbus=1.13.6=h5008d03_3
- debugpy=1.8.13=py311hfdbb021_0
- decorator=5.2.1=pyhd8ed1ab_0
- double-conversion=3.3.1=h5888daf_0
- elog=1.3.16=py_0
- epics-base=7.0.7.0=h2dfad98_0
- epoxy=1.5.10=h166bdaf_1
- exceptiongroup=1.2.2=pyhd8ed1ab_1
- executing=2.1.0=pyhd8ed1ab_1
- expat=2.6.4=h5888daf_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_3
- fontconfig=2.15.0=h7e30c49_1
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.56.0=py311h2dc5d0c_0
- freetype=2.13.3=h48d6fc4_0
- fribidi=1.0.10=h36c2ea0_0
- fuzzywuzzy=0.18.0=pyhd8ed1ab_1
- gdk-pixbuf=2.42.12=hb9ae30d_0
- glib=2.82.2=h07242d1_1
- glib-tools=2.82.2=h4833e2c_1
- graphite2=1.3.13=h59595ed_1003
- gst-plugins-base=1.24.7=h0a52356_0
- gstreamer=1.24.7=hf3bb09a_0
- gtk3=3.24.43=h021d004_4
- h2=4.2.0=pyhd8ed1ab_0
- h5py=3.13.0=nompi_py311hb639ac4_100
- harfbuzz=10.4.0=h76408a6_0
- hdf5=1.14.3=nompi_h2d575fe_109
- hicolor-icon-theme=0.17=ha770c72_2
- hpack=4.1.0=pyhd8ed1ab_0
- hyperframe=6.1.0=pyhd8ed1ab_0
- icu=75.1=he02047a_0
- idna=3.10=pyhd8ed1ab_1
- importlib-metadata=8.6.1=pyha770c72_0
- ipykernel=6.29.5=pyh3099207_0
- ipympl=0.9.7=pyhd8ed1ab_1
- ipython=9.0.2=pyhfb0248b_0
- ipython_pygments_lexers=1.1.1=pyhd8ed1ab_0
- ipywidgets=8.1.5=pyhd8ed1ab_1
- jedi=0.19.2=pyhd8ed1ab_1
- jungfrau_utils=3.16.0=py_0
- jupyter_client=8.6.3=pyhd8ed1ab_1
- jupyter_core=5.7.2=pyh31011fe_1
- jupyterlab_widgets=3.0.13=pyhd8ed1ab_1
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.7=py311hd18a35c_0
- krb5=1.21.3=h659f571_0
- lcms2=2.17=h717163a_0
- ld_impl_linux-64=2.43=h712a8e2_4
- lerc=4.0.0=h27087fc_0
- levenshtein=0.27.1=py311hfdbb021_0
- libaec=1.1.3=h59595ed_0
- libblas=3.9.0=31_h59b9bed_openblas
- libbrotlicommon=1.1.0=hb9d3cd8_2
- libbrotlidec=1.1.0=hb9d3cd8_2
- libbrotlienc=1.1.0=hb9d3cd8_2
- libcap=2.75=h39aace5_0
- libcblas=3.9.0=31_he106b2a_openblas
- libclang-cpp19.1=19.1.7=default_hb5137d0_2
- libclang13=20.1.1=default_h9c6a7e4_0
- libcups=2.3.3=h4637d8d_4
- libcurl=8.12.1=h332b0f4_0
- libdeflate=1.23=h4ddbbb0_0
- libdrm=2.4.124=hb9d3cd8_0
- libedit=3.1.20250104=pl5321h7949ede_0
- libegl=1.7.0=ha4b6fd6_2
- libev=4.33=hd590300_2
- libexpat=2.6.4=h5888daf_0
- libffi=3.4.6=h2dba641_0
- libgcc=14.2.0=h767d61c_2
- libgcc-ng=14.2.0=h69a702a_2
- libgfortran=14.2.0=h69a702a_2
- libgfortran5=14.2.0=hf1ad2bd_2
- libgl=1.7.0=ha4b6fd6_2
- libglib=2.82.2=h2ff4ddf_1
- libglvnd=1.7.0=ha4b6fd6_2
- libglx=1.7.0=ha4b6fd6_2
- libgomp=14.2.0=h767d61c_2
- libiconv=1.18=h4ce23a2_1
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=31_h7ac8fdf_openblas
- libllvm19=19.1.7=ha7bfdaf_1
- libllvm20=20.1.1=ha7bfdaf_0
- liblzma=5.6.4=hb9d3cd8_0
- libnghttp2=1.64.0=h161d5f1_0
- libnsl=2.0.1=hd590300_0
- libntlm=1.8=hb9d3cd8_0
- libogg=1.3.5=h4ab18f5_0
- libopenblas=0.3.29=pthreads_h94d23a6_0
- libopengl=1.7.0=ha4b6fd6_2
- libopus=1.3.1=h7f98852_1
- libpciaccess=0.18=hd590300_0
- libpng=1.6.47=h943b412_0
- libpq=17.4=h27ae623_0
- librsvg=2.58.4=h49af25d_2
- libsodium=1.0.20=h4ab18f5_0
- libsqlite=3.49.1=hee588c1_2
- libssh2=1.11.1=hf672d98_0
- libstdcxx=14.2.0=h8f9b012_2
- libstdcxx-ng=14.2.0=h4852527_2
- libtiff=4.7.0=hd9ff511_3
- libudev1=257.4=hbe16f8c_1
- libusb=1.0.28=hb9d3cd8_0
- libuuid=2.38.1=h0b41bf4_0
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.5.0=h851e524_0
- libxcb=1.17.0=h8a09558_0
- libxcrypt=4.4.36=hd590300_1
- libxkbcommon=1.8.1=hc4a0caf_0
- libxml2=2.13.6=h8d12d68_0
- libxslt=1.1.39=h76b75d6_0
- libzlib=1.3.1=hb9d3cd8_2
- llvmlite=0.44.0=py311h9c9ff8c_1
- loguru=0.7.2=py311h38be061_2
- logzero=1.7.0=py311h38be061_6
- lxml=5.3.1=py311hcfaa980_0
- matplotlib=3.10.1=py311h38be061_0
- matplotlib-base=3.10.1=py311h2b939e6_0
- matplotlib-inline=0.1.7=pyhd8ed1ab_1
- mesalib=25.0.2=he8ffa69_1
- mflow=0.2.0=pyh39e3cac_2
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=9.0.1=h266115a_5
- mysql-libs=9.0.1=he0572af_5
- ncurses=6.5=h2d0b736_3
- nest-asyncio=1.6.0=pyhd8ed1ab_1
- numba=0.61.0=py311h4e1c48f_1
- numpy=2.1.3=py311h71ddf71_0
- openjpeg=2.5.3=h5fbd93e_0
- openldap=2.6.9=he970967_0
- openssl=3.4.1=h7b32b05_0
- packaging=24.2=pyhd8ed1ab_2
- pandas=2.2.3=py311h7db5c69_1
- pango=1.56.3=h861ebed_0
- parso=0.8.4=pyhd8ed1ab_1
- passlib=1.7.4=pyhd8ed1ab_2
- pcre2=10.44=hba22ea6_2
- perl=5.32.1=7_hd590300_perl5
- pexpect=4.9.0=pyhd8ed1ab_1
- pickleshare=0.7.5=pyhd8ed1ab_1004
- pillow=11.1.0=py311h1322bbf_0
- pip=25.0.1=pyh8b19718_0
- pixman=0.44.2=h29eaf8c_0
- platformdirs=4.3.7=pyh29332c3_0
- prompt-toolkit=3.0.50=pyha770c72_0
- psutil=7.0.0=py311h9ecbd09_0
- pthread-stubs=0.4=hb9d3cd8_1002
- ptyprocess=0.7.0=pyhd8ed1ab_1
- pure_eval=0.2.3=pyhd8ed1ab_1
- pycparser=2.22=pyh29332c3_1
- pyepics=3.4.3=py_0
- pygments=2.19.1=pyhd8ed1ab_0
- pyparsing=3.2.2=pyhd8ed1ab_0
- pyserial=3.5=pyhd8ed1ab_1
- pyside6=6.8.2=py311h9053184_1
- pysocks=1.7.1=pyha55dd90_7
- python=3.11.11=h9e4cc4f_2_cpython
- python-dateutil=2.9.0.post0=pyhff2d567_1
- python-levenshtein=0.27.1=pyhff2d567_0
- python-tzdata=2025.2=pyhd8ed1ab_0
- python_abi=3.11=5_cp311
- pytz=2024.1=pyhd8ed1ab_0
- pyusb=1.3.1=pyhd8ed1ab_0
- pyvisa=1.14.1=pyhd8ed1ab_1
- pyvisa-py=0.7.2=pyhd8ed1ab_1
- pyzmq=26.3.0=py311h7deb3e3_0
- qhull=2020.2=h434a139_5
- qt6-main=6.8.2=h588cce1_0
- rapidfuzz=3.12.2=py311hfdbb021_0
- readline=8.2=h8c095d6_2
- requests=2.32.3=pyhd8ed1ab_1
- scipy=1.15.2=py311h8f841c2_0
- setuptools=75.8.2=pyhff2d567_0
- sfdata=0.4.1=py_0
- six=1.17.0=pyhd8ed1ab_0
- spirv-tools=2024.3=h84d6215_0
- stack_data=0.6.3=pyhd8ed1ab_1
- termcolor=2.3.0=pyhd8ed1ab_0
- tk=8.6.13=noxft_h4845f30_101
- tornado=6.4.2=py311h9ecbd09_0
- tqdm=4.67.1=pyhd8ed1ab_1
- traitlets=5.14.3=pyhd8ed1ab_1
- typing-extensions=4.12.2=hd8ed1ab_1
- typing_extensions=4.12.2=pyha770c72_1
- tzdata=2025b=h78e105d_0
- unicodedata2=16.0.0=py311h9ecbd09_0
- urllib3=2.3.0=pyhd8ed1ab_0
- wayland=1.23.1=h3e06ad9_0
- wcwidth=0.2.13=pyhd8ed1ab_1
- wheel=0.45.1=pyhd8ed1ab_1
- widgetsnbextension=4.0.13=pyhd8ed1ab_1
- wxpython=4.2.2=py311h356f471_6
- wxwidgets=3.2.6=hf87bdbc_3
- xarray=2025.3.0=pyhd8ed1ab_0
- xcb-util=0.4.1=hb711507_2
- xcb-util-cursor=0.1.5=hb9d3cd8_0
- xcb-util-image=0.4.0=hb711507_2
- xcb-util-keysyms=0.4.1=hb711507_0
- xcb-util-renderutil=0.3.10=hb711507_0
- xcb-util-wm=0.4.2=hb711507_0
- xkeyboard-config=2.43=hb9d3cd8_0
- xorg-libice=1.1.2=hb9d3cd8_0
- xorg-libsm=1.2.6=he73a12e_0
- xorg-libx11=1.8.12=h4f16b4b_0
- xorg-libxau=1.0.12=hb9d3cd8_0
- xorg-libxcomposite=0.4.6=hb9d3cd8_2
- xorg-libxcursor=1.2.3=hb9d3cd8_0
- xorg-libxdamage=1.1.6=hb9d3cd8_0
- xorg-libxdmcp=1.1.5=hb9d3cd8_0
- xorg-libxext=1.3.6=hb9d3cd8_0
- xorg-libxfixes=6.0.1=hb9d3cd8_0
- xorg-libxi=1.8.2=hb9d3cd8_0
- xorg-libxinerama=1.1.5=h5888daf_1
- xorg-libxrandr=1.5.4=hb9d3cd8_0
- xorg-libxrender=0.9.12=hb9d3cd8_0
- xorg-libxshmfence=1.3.3=hb9d3cd8_0
- xorg-libxtst=1.2.5=hb9d3cd8_3
- xorg-libxxf86vm=1.1.6=hb9d3cd8_0
- yaspin=3.1.0=pyhd8ed1ab_0
- zeromq=4.3.5=h3b0a872_7
- zipp=3.21.0=pyhd8ed1ab_1
- zstandard=0.23.0=py311h9ecbd09_1
- zstd=1.5.7=hb8e6e7a_2
prefix: /sf/cristallina/applications/conda/envs/slic2

39
jupyter-alpha.yml Executable file
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@@ -0,0 +1,39 @@
# Bare Jupyter Lab installation _without_ analysis tools.
# This is to have the most up-to-date jupyter server packages.
#
# Caveat: it requires the same/similar ipympl packages
#
name: jupyter-alpha
channels:
- conda-forge
dependencies:
- python
- pip
- numpy
- pandas
- numba
- matplotlib
- ipython
- jupyterlab
- ipympl
- black
- pytest
- loguru
# Jupyterlab extensions
- nb_conda_kernels # for discovery of other kernels
- jupyterlab_code_formatter
- jupyter-collaboration
# disabled until stable with collaboration: - jupytext
# PSI specific modules
#- paulscherrerinstitute::jungfrau_utils
#- bitshuffle
#- paulscherrerinstitute::sfdata
# - pip:
#- ipytest
# still necessary manually afterwards:
# pip install jupyterlab_hdf
# jupyter labextension install @jupyterlab/hdf5

4
jupyter_alpha.yml
View File

@@ -26,7 +26,9 @@ dependencies:
- jupyterlab_code_formatter
- jupyter-collaboration
# disabled until stable with collaboration: - jupytext
# cristallina
#
# PSI specific modules
#- paulscherrerinstitute::jungfrau_utils
#- bitshuffle

41
jupyter_beta.yml Executable file
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@@ -0,0 +1,41 @@
# Bare Jupyter Lab installation _without_ analysis tools.
# This is to have the most up-to-date jupyter server packages.
#
# Caveat: it requires the same/similar ipympl packages
#
name: jupyter_beta
channels:
- conda-forge
dependencies:
- python
- pip
- numpy
- pandas
- numba
- matplotlib
- ipython
- jupyterlab
- ipympl
- black
- pytest
- loguru
# Jupyterlab extensions
- nb_conda_kernels # for discovery of other kernels
- jupyterlab_code_formatter
- jupyter-collaboration
# disabled until stable with collaboration: - jupytext
# cristallina
#
# PSI specific modules
#- paulscherrerinstitute::jungfrau_utils
#- bitshuffle
#- paulscherrerinstitute::sfdata
# - pip:
#- ipytest
# still necessary manually afterwards:
# pip install jupyterlab_hdf
# jupyter labextension install @jupyterlab/hdf5

0
optical_simulations.yml Normal file → Executable file
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0
ptychography.yml Normal file → Executable file
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60
slic.yml Executable file
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@@ -0,0 +1,60 @@
# SLIC environment description
# This is the default SLIC environment
# We are trying to be fairly up-to-date here, at the moment this is compatible with python 3.9.
# use via:
# conda env create --name $NEW_ENV_NAME --file $THIS_FILE_NAME
# e.g.
# conda env create --name slic --file conda-env.yml
# NOTE: $NEW_ENV_NAME is optional and defaults to slic
name: slic
channels:
- conda-forge
dependencies:
- python=3.12 # keep at 3.11 beause of cachannel
- ipython
- numpy
- scipy
- matplotlib
- ipympl
- playsound
- bitshuffle>=0.5.2 # should work accoding to Sven's yaml
# for execution and kernel discovery within jupyter
- ipykernel
- partialjson # For parsing unfinished json files
# DAQ
- paulscherrerinstitute::bsread
# maybe useful for some special application:
- paulscherrerinstitute::cam_server_client # Needed for the KB focusing script
- paulscherrerinstitute::data_api
- paulscherrerinstitute::elog
- pyepics>=3.4.2 # Used to be from paulscherrerinstitute, but changed here
# Own DAQ
- pyvisa-py
- pyserial
- pyusb
- dbus-python
# data
- paulscherrerinstitute::jungfrau_utils>=3.16.0
- paulscherrerinstitute::sfdata
# GUI
- wxpython
# CTA
- paulscherrerinstitute::cta_lib
# Channel access
- paulscherrerinstitute::cachannel # The package is still quite archaic and may not work with 3.12. Trying here
# terminal
- colorama
- tqdm
- fuzzywuzzy
- logzero
- yaspin
- loguru
- rich
- pip:
- -e /sf/cristallina/applications/slic/slic-package # Creates a "local package" of slic. This shows a deprication warning and
# should be changed to using .toml in the future.

60
smarpod.yml Executable file
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@@ -0,0 +1,60 @@
# Copy of the slic-crq env. Added packages to control the smaract hexapod. (Added later with pip install from a folder). The env is temporary and will be deleted once the hexapod is in epics.
# use via:
# conda env create --name $NEW_ENV_NAME --file $THIS_FILE_NAME
# e.g.
# conda env create --name slic --file conda-env.yml
# NOTE: $NEW_ENV_NAME is optional and defaults to slic
name: smarpod
channels:
- conda-forge
dependencies:
- python=3.11 # keep at 3.11 beause of cachannel
- ipython
- numpy
- scipy
- matplotlib
- ipympl
- playsound
- bitshuffle=0.5.2=py311h49a552a_5 # this specific build of bitshuffle works with python 3.11, for higher versions new build must be found
# for execution and kernel discovery within jupyter
- ipykernel
- partialjson # For parsing unfinished json files
# DAQ
- paulscherrerinstitute::bsread
# maybe useful for some special application:
- paulscherrerinstitute::cam_server_client # Needed for the KB focusing script
- paulscherrerinstitute::data_api
- paulscherrerinstitute::elog
- pyepics>=3.4.2 # Used to be from paulscherrerinstitute, but changed here
# Own DAQ
- pyvisa-py
- pyserial
- pyusb
- dbus-python
# data
- paulscherrerinstitute::jungfrau_utils>=3.16.0
- paulscherrerinstitute::sfdata
# GUI
- wxpython
# CTA
- paulscherrerinstitute::cta_lib
# Channel access
- paulscherrerinstitute::cachannel # The package is still quite archaic and does not work with 3.12.
# The code is aparently already ready, but the package has not been built
# terminal
- colorama
- tqdm
- fuzzywuzzy
- logzero
- yaspin
- loguru
- rich
- setuptools==58.2.0 # newer versions of setuptools can't build the smarct hexapod package
- pip:
- -e /sf/cristallina/applications/slic/slic-package # Creates a "local package" of slic. This shows a deprication warning and
# should be changed to using .toml in the future.
- /sf/cristallina/applications/devices/SmarPod/SDK/Python/packages/smaract.smarpod-1.9.20.zip # Smaract hexapod