slic into slic-crq

slic-crq.yml

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+# SLIC environment description
+# This is the default SLIC environment 
+# We are trying to be fairly up-to-date here, at the moment this is compatible with python 3.9.
+
+ 
+# use via:
+# conda env create --name $NEW_ENV_NAME --file $THIS_FILE_NAME
+# e.g.
+# conda env create --name slic --file conda-env.yml
+# NOTE: $NEW_ENV_NAME is optional and defaults to slic
+
+name: slic-crq
+channels:
+  - conda-forge
+dependencies:
+  - python=3.11   # keep at 3.11 beause of cachannel
+  - ipython
+  - numpy
+  - scipy
+  - matplotlib
+  - ipympl
+  - playsound
+  - bitshuffle=0.5.2=py311h49a552a_5  # this specific build of bitshuffle works with python 3.11, for higher versions new build must be found
+# for execution and kernel discovery within jupyter
+  - ipykernel
+  - partialjson # For parsing unfinished json files
+# DAQ
+  - paulscherrerinstitute::bsread
+    # maybe useful for some special application:
+  - paulscherrerinstitute::cam_server_client  # Needed for the KB focusing script
+  - paulscherrerinstitute::data_api
+  - paulscherrerinstitute::elog
+  - pyepics>=3.4.2 # Used to be from paulscherrerinstitute, but changed here
+# Own DAQ
+  - pyvisa-py
+  - pyserial
+  - pyusb
+  - dbus-python
+# data
+  - paulscherrerinstitute::jungfrau_utils>=3.16.0
+  - paulscherrerinstitute::sfdata
+# GUI
+  - wxpython
+# CTA
+  - paulscherrerinstitute::cta_lib
+# Channel access 
+  - paulscherrerinstitute::cachannel  # The package is still quite archaic and does not work with 3.12. 
+                                      # The code is aparently already ready, but the package has not been built
+# terminal 
+  - colorama
+  - tqdm
+  - fuzzywuzzy
+  - logzero
+  - yaspin
+  - loguru
+  - rich
+
+
+  - pip:
+    - -e /sf/cristallina/applications/slic/slic-package     # Creates a "local package" of slic. This shows a deprication warning and
+                                                            # should be changed to using .toml in the future.  

slic.yml

@@ -1,49 +0,0 @@
-# SLIC environment description
-# This is the default SLIC environment 
-# We are trying to be fairly up-to-date here, at the moment this is compatible with python 3.9.
-
- 
-# use via:
-# conda env create --name $NEW_ENV_NAME --file $THIS_FILE_NAME
-# e.g.
-# conda env create --name slic --file conda-env.yml
-# NOTE: $NEW_ENV_NAME is optional and defaults to slic
-
-name: slic
-channels:
-  - conda-forge
-dependencies:
-  - python
-  - ipython
-  - numpy
-  - scipy
-  - matplotlib
-  - ipympl
-# for execution and kernel discovery within jupyter
-  - ipykernel
-# DAQ
-  - paulscherrerinstitute::bsread
-    # maybe useful for some special application:
-    # - paulscherrerinstitute::cam_server_client
-  - paulscherrerinstitute::data_api
-  - paulscherrerinstitute::elog
-  - pyepics # Used to be from paulscherrerinstitute, but changed here
-# Own DAQ
-  - pyvisa-py
-  - pyserial
-  - pyusb
-# data
-  - paulscherrerinstitute::jungfrau_utils >=3
-  - paulscherrerinstitute::sfdata
-# GUI
-  - wxpython
-# Channel access 
-  - cachannel
-# terminal
-  - colorama
-  - tqdm
-  - fuzzywuzzy
-  - logzero
-  - yaspin
-  - loguru
-