added shift function to ROI

src/cristallina/utils.py

@@ -103,12 +103,12 @@ def collect_runs_metadata(pgroup_data_dir: str | os.PathLike):
     return df
 
 
-def scan_info(run_number, base_path=None, small_data=True):
+def scan_info(run_number, base_path=None, small_data=True, pgroup=None):
     """Returns SFScanInfo object for a given run number.
     If there is are small data channels, they will be added (small_data=False to suppress their loading).
     """
     if base_path == None:
-        base_path = heuristic_extract_base_path()
+        base_path = heuristic_extract_base_path(pgroup)
 
     scan = SFScanInfo(f"{base_path}run{run_number:04}/meta/scan.json")
 
@@ -275,6 +275,11 @@ def process_run(
                                 det_pids[only_shots],
                                 data[detector][only_shots, bottom:top, left:right].std(axis=(1, 2)),
                             )
+                        if "max" in calculate:
+                            sd[roi.name + "_max"] = (
+                                det_pids[only_shots],
+                                data[detector][only_shots, bottom:top, left:right].max(axis=(1, 2)),
+                            )
                         if "img" in calculate:
                             sd[f"{roi.name}_img"] = (
                                 det_pids[only_shots],
@@ -447,6 +452,25 @@ class ROI:
     @property
     def height(self):
         return self.top - self.bottom
+    
+    def shift(self, x: float, y: float, inplace=False):
+        """ Returns a new ROI that is shifted 
+            by x to the left and by y pixels up.
+            
+            If `inplace=True` shifts the existing ROI instead.
+         """
+        if not inplace:
+            return ROI(left=self.left+x, 
+                    right=self.right+x, 
+                    bottom = self.bottom+y,
+                    top=self.top+y,
+                    name=self.name)
+        else:
+            self.left = self.left + x
+            self.right = self.right + x
+            self.bottom = self.bottom + y
+            self.top = self.top + y
+
 
     def __repr__(self):
         if hasattr(self, "name"):
@@ -539,9 +563,10 @@ def heuristic_extract_pgroup(path=None):
         raise KeyError("Automatic p-group extraction from the current working directory didn't work.")
 
 
-def heuristic_extract_base_path():
+def heuristic_extract_base_path(p_number=None):
     """The function tries to guess the full path where the raw data is saved."""
-    p_number = heuristic_extract_pgroup()
+    if p_number is None:
+        p_number = heuristic_extract_pgroup()
     base_path = f"/sf/cristallina/data/p{p_number}/raw/"
     return base_path