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Remove anchors and replace aliases with the name of the keyword they refer to. Example, keyword : keyword_anchor value, *keyword_anchor replaced as keyword.

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florez_j
2025-02-03 11:28:57 +01:00
parent 713a4c4fe7
commit fba121cf5c
1 changed files with 52 additions and 52 deletions
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104
pipelines/params/calibration_factors.yaml
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@ -1,14 +1,14 @@
# Define common factors
# Get values from data/<station>/<year>/config_acsm_<year>.r, values used in Tofware analysis.
IE_tofware: &IE 145.9
ABRefWave_tofware: &ABRefWave 254000
RIE_SO4_tofware: &RIE_SO4 0.63
RIE_NH4_tofware: &RIE_NH4 3.495
RIE_Org_tofware: &RIE_Org 1.4
RIE_NO3_tofware: &RIE_NO3 1.05
RIE_Chl_tofware: &RIE_Chl 1.0
CE_tofware: &CE 1.0
IE_tofware: 145.9
ABRefWave_tofware: 254000
RIE_SO4_tofware: 0.63
RIE_NH4_tofware: 3.495
RIE_Org_tofware: 1.4
RIE_NO3_tofware: 1.05
RIE_Chl_tofware: 1.0
CE_tofware: 1.0
# Get values from data/<station>/<year>/cal.csv
@ -16,107 +16,107 @@ calibration_intervals: # Specify datetimes (YYYY-MM-DD HH-MM-SS)
inverval_1:
start_datetime : '2022-01-16 00-00-00' # date and time where calibration was concluded
end_datetime : '2022-01-16 00-00-00'
IE_correct: &IE_correct 145.9
AB_ref_correct: &AB_ref_correct 254000
RIE_SO4_correct: &RIE_SO4_correct 0.63
RIE_NH4_correct: &RIE_NH4_correct 3.495
RIE_Org_correct: &RIE_Org_correct 1.4
RIE_NO3_correct: &RIE_NO3_correct 1.05
RIE_Chl_correct: &RIE_Chl_correct 1.0
CE_correct: &CE_correct 1.0
IE_correct: 145.9
AB_ref_correct: 254000
RIE_SO4_correct: 0.63
RIE_NH4_correct: 3.495
RIE_Org_correct: 1.4
RIE_NO3_correct: 1.05
RIE_Chl_correct: 1.0
CE_correct: 1.0
inverval_2 :
start_datetime : '2022-06-16 00-00-00'
end_datetime : '2022-01-16 00-00-00'
IE_correct: &IE_correct 145.9
AB_ref_correct: &AB_ref_correct 254000
RIE_SO4_correct: &RIE_SO4_correct 0.63
RIE_NH4_correct: &RIE_NH4_correct 3.495
RIE_Org_correct: &RIE_Org_correct 1.4
RIE_NO3_correct: &RIE_NO3_correct 1.05
RIE_Chl_correct: &RIE_Chl_correct 1.0
CE_correct: &CE_correct 1.0
IE_correct: 145.9
AB_ref_correct: 254000
RIE_SO4_correct: 0.63
RIE_NH4_correct: 3.495
RIE_Org_correct: 1.4
RIE_NO3_correct: 1.05
RIE_Chl_correct: 1.0
CE_correct: 1.0
# Define mappings for associated variables
variables:
# all_dat[, NO3_correct := (NO3_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)]
NO3_11000:
num: [*IE, *RIE_NO3, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_NO3_correct, *ABRefWave, *CE_correct]
num: ["IE_tofware", "RIE_NO3_tofware", "AB_ref_correct", "CE_tofware"]
den: ["IE_correct", "RIE_NO3_correct", "ABRefWave_tofware", "CE_correct"]
# all_dat[, SO4_correct := (SO4_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)]
SO4_11000:
num: [*IE, *RIE_SO4, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE_correct]
num: ["IE_tofware", "RIE_SO4_tofware", "AB_ref_correct", "CE_tofware"]
den: ["IE_tofware", "RIE_SO4_correct", "ABRefWave_tofware", "CE_correct"]
# all_dat[, NH4_correct := (NH4_11000 * IE * RIE_NH4 * AB_ref_correct) / (IE_correct * RIE_NH4_correct * ABRefWave)]
NH4_11000:
num: [*IE, *RIE_NH4, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_NH4_correct, *ABRefWave, *CE_correct]
num: ["IE_tofware", "RIE_NH4_tofware", "AB_ref_correct", "CE_tofware"]
den: ["IE_tofware", "RIE_NH4_correct", "ABRefWave_tofware", "CE_correct"]
# all_dat[, Org_correct := (Org_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)]
Org_11000:
num: [*IE, *RIE_Org, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_Org_correct, *ABRefWave, *CE_correct]
num: ["IE_tofware", "RIE_Org_tofware", "AB_ref_correct", "CE_tofware"]
den: ["IE_tofware", "RIE_Org_correct", "ABRefWave_tofware", "CE_correct"]
# all_dat[, Chl_correct := (Chl_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)]
Chl_11000:
num: [*IE, *RIE_Chl, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_Chl_correct, *ABRefWave, *CE_correct]
num: ["IE_tofware", "RIE_Chl_tofware", "AB_ref_correct", "CE_tofware"]
den: ["IE_tofware", "RIE_Chl_correct", "ABRefWave_tofware", "CE_correct"]
# m/z levels columns are treated differently to those above
# all_dat[, Org_44_11000_correct := (Org_44_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)]
Org_44_11000:
num: [*IE, *RIE_Org, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_Org_correct, *ABRefWave, *CE, *RIE_Org, *CE_correct]
num: ["IE_tofware", "RIE_Org_tofware", "AB_ref_correct", "CE_tofware"]
den: ["IE_tofware", "RIE_Org_correct", "ABRefWave_tofware", "CE_tofware", "RIE_Org_tofware", "CE_correct"]
# all_dat[, Org_43_11000_correct := (Org_43_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)]
Org_43_11000:
num: [*IE, *RIE_Org, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_Org_correct, *ABRefWave, *CE, *RIE_Org, *CE_correct]
num: ["IE_tofware", "RIE_Org_tofware", "AB_ref_correct", "CE_tofware"]
den: ["IE_tofware", "RIE_Org_correct", "ABRefWave_tofware", "CE_tofware", "RIE_Org_tofware", "CE_correct"]
# all_dat[, Org_60_11000_correct := (Org_60_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)]
Org_60_11000:
num: [*IE, *RIE_Org, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_Org_correct, *ABRefWave, *CE, *RIE_Org, *CE_correct]
num: ["IE_tofware", "RIE_Org_tofware", "AB_ref_correct", "CE_tofware"]
den: ["IE_tofware", "RIE_Org_correct", "ABRefWave_tofware", "CE_tofware", "RIE_Org_tofware", "CE_correct"]
# all_dat[, NO3_30_11000_correct := (NO3_30_11000 * IE * AB_ref_correct) / (IE_correct * ABRefWave)]
NO3_30_11000:
num: [*IE, *RIE_NO3, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_NO3_correct, *ABRefWave, *CE, *RIE_NO3, *CE_correct]
num: ["IE_tofware", "RIE_NO3_tofware", "AB_ref_correct", "CE_tofware"]
den: ["IE_tofware", "RIE_NO3_correct", "ABRefWave_tofware", "CE_tofware", "RIE_NO3_tofware", "CE_correct"]
# all_dat[, SO4_98_11000_correct := (SO4_98_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)]
SO4_98_11000:
num: [*IE, *RIE_SO4, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE, *RIE_SO4, *CE_correct]
num: ["IE_tofware", "RIE_SO4_tofware", "AB_ref_correct", "CE_tofware"]
den: ["IE_tofware", "RIE_SO4_correct", "ABRefWave_tofware", "CE_tofware", "RIE_SO4_tofware", "CE_correct"]
# all_dat[, SO4_81_11000_correct := (SO4_81_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)]
SO4_81_11000:
num: [*IE, *RIE_SO4, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE, *RIE_SO4, *CE_correct]
num: ["IE_tofware", "RIE_SO4_tofware", "AB_ref_correct", "CE_tofware"]
den: ["IE_tofware", "RIE_SO4_correct", "ABRefWave_tofware", "CE_tofware", "RIE_SO4_tofware", "CE_correct"]
# all_dat[, SO4_82_11000_correct := (SO4_82_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)]
SO4_82_11000:
num: [*IE, *RIE_SO4, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE, *RIE_SO4, *CE_correct]
num: ["IE_tofware", "RIE_SO4_tofware", "AB_ref_correct", "CE_tofware"]
den: ["IE_tofware", "RIE_SO4_correct", "ABRefWave_tofware", "CE_tofware", "RIE_SO4_tofware", "CE_correct"]
# all_dat[, SO4_62_11000_correct := (SO4_62_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)]
SO4_62_11000:
num: [*IE, *RIE_SO4, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE, *RIE_SO4, *CE_correct]
num: ["IE_tofware", "RIE_SO4_tofware", "AB_ref_correct", "CE_tofware"]
den: ["IE_tofware", "RIE_SO4_correct", "ABRefWave_tofware", "CE_tofware", "RIE_SO4_tofware", "CE_correct"]
# all_dat[, SO4_48_11000_correct := (SO4_48_11000 * IE * RIE_SO4 * AB_ref_correct) / (IE_correct * RIE_SO4_correct * ABRefWave)]
SO4_48_11000:
num: [*IE, *RIE_SO4, *AB_ref_correct, *CE]
den: [*IE_correct, *RIE_SO4_correct, *ABRefWave, *CE, *RIE_SO4, *CE_correct]
num: ["IE_tofware", "RIE_SO4_tofware", "AB_ref_correct", "CE_tofware"]
den: ["IE_tofware", "RIE_SO4_correct", "ABRefWave_tofware", "CE_tofware", "RIE_SO4_tofware", "CE_correct"]