|
|
3175db94da
|
Refactor minorly notebooks/demo_acsm_pipeline.ipynb to include Renku Metadata Logging using RenkuWorkflowBuilder class.
|
2025-09-23 16:18:58 +02:00 |
|
|
|
c023fd7937
|
Update README.md with requirement for renku graph visualization.
|
2025-09-23 16:15:52 +02:00 |
|
|
|
3140e1b05e
|
Add run_and_add_step() method in RenkuWorkflowBuilder and improve docstrings. The new method runs step and record renku metadata in a centralized workflow file in yaml format.
|
2025-09-23 16:14:23 +02:00 |
|
|
|
3663fce07c
|
Remove renku workflow recording input parameters in main and delegated that to RenkuWorkflowBuilder. This way we can more easily extent provenance recording to other steps. Steps however still need to return a dictionary with valid structure and renku provenance information.
|
2025-09-23 16:11:52 +02:00 |
|
|
|
58ce34d56d
|
Comment out line that was conflicting with dockercompose file. When activating local acsm processor with whole repo as a volumn, data figures and params folders were not visible in container.
|
2025-09-23 16:07:21 +02:00 |
|
|
|
e2d9936de8
|
Update dima to latest commit
|
2025-09-20 16:21:47 +02:00 |
|
|
|
151719729c
|
Prepare v1.0.0 release as acsm-fairifier
v1.0.0
|
2025-07-04 15:19:14 +02:00 |
|
|
|
fd68fa4ca3
|
Update campaignDescriptor.yaml with new instructions
|
2025-07-04 14:53:41 +02:00 |
|
|
|
e80abbdf9a
|
Update README.md with conda forge install instructions and input data format. Add environment.yml to construct comp env based on conda forge.
|
2025-07-04 14:52:29 +02:00 |
|
|
|
41af4cabe2
|
Update dima to latest version
|
2025-06-29 17:49:31 +02:00 |
|
|
|
c694e4c71d
|
Update submodule to tag v1.0.0
|
2025-06-26 11:30:42 +02:00 |
|
|
|
367f8d5ca5
|
Update dima to latest version
|
2025-06-25 16:55:03 +02:00 |
|
|
|
267988514d
|
Update docker-compose.yaml to make changes in the whole project persistent
|
2025-06-25 16:47:20 +02:00 |
|
|
|
2475e21101
|
Fix typos in CampaignDescriptor.yaml
|
2025-06-25 16:46:35 +02:00 |
|
|
|
28b7b539e8
|
Update dockerfile to comply with psi rules about anaconda
|
2025-06-25 14:21:16 +02:00 |
|
|
|
1bba5cd755
|
Comment out dot.view() for compatibility issues running on docker
|
2025-06-22 15:25:52 +02:00 |
|
|
|
f90ef82a32
|
Comment out dot.view() for compatibility issues running on docker
|
2025-06-22 15:22:24 +02:00 |
|
|
|
967a40f93a
|
Update Dockerfile to contain renderer for graphviz workflow files
|
2025-06-22 15:06:13 +02:00 |
|
|
|
6547cd9e17
|
Update campaignDescriptor.yaml with instruction details
|
2025-06-22 15:00:57 +02:00 |
|
|
|
7fc2ee211d
|
Update readme.md with clarifying statement. NETWORK_MOUNT env variable defautls to data/ in repo
|
2025-06-22 14:59:50 +02:00 |
|
|
|
3f2c3b47f2
|
Update docker-compose.yaml with env variable NETWORK_MOUNT. Local run: it defaults to data/ and otherwise it takes the value based on .env externally defined.
|
2025-06-22 14:48:30 +02:00 |
|
|
|
a80f03463c
|
Update reademe.md
|
2025-06-22 12:44:50 +02:00 |
|
|
|
dec7dc47e2
|
Update docker-compose.yaml to depend on externally defined network drive (e.g., NETWORK_DRIVE)
|
2025-06-22 12:44:07 +02:00 |
|
|
|
e6b05b4914
|
Update campaignDescriptor.yaml to depend on externally defined network drive (e.g., NETWORK_DRIVE)
|
2025-06-22 12:43:37 +02:00 |
|
|
|
071d1f49a7
|
Update dima to latest version
|
2025-06-22 12:27:48 +02:00 |
|
|
|
1e4cd3fc8a
|
Update dima to latest version
|
2025-06-20 13:44:00 +02:00 |
|
|
|
bb3907d384
|
Fixed url type in README.md
|
2025-06-18 08:58:40 +02:00 |
|
|
|
6d421bdad8
|
Update docker-compose.yaml. Includes services for running with a network drive or locally
|
2025-06-17 22:09:00 +02:00 |
|
|
|
4cda1ffb72
|
Add poster with figures
|
2025-06-17 22:07:55 +02:00 |
|
|
|
5319430d5d
|
Update to README.md, includes main features authors and funding
|
2025-06-17 22:07:27 +02:00 |
|
|
|
482db5704d
|
Add AGPL3 licence
|
2025-06-11 10:36:47 +02:00 |
|
|
|
23253644f8
|
Update dima to latest version. Params can now be partially ingested to hdf5 files
|
2025-06-10 16:04:56 +02:00 |
|
|
|
56ead34ef9
|
Correct typo in README.md
|
2025-06-10 14:45:38 +02:00 |
|
|
|
0414f5608c
|
update dima to latest version
|
2025-06-10 14:43:23 +02:00 |
|
|
|
57c5d9784c
|
Add notebook for worfklow visualization
|
2025-06-07 20:03:53 +02:00 |
|
|
|
fda5099221
|
Change computational env to include graphviz for workflow visualization
|
2025-06-07 20:02:41 +02:00 |
|
|
|
457a2ae016
|
Update workflow step names
|
2025-06-07 20:01:02 +02:00 |
|
|
|
8f9790456c
|
Implement plot_workflow_file() --> workflows/utils.py.
|
2025-06-07 19:54:45 +02:00 |
|
|
|
fdad73dd77
|
Update dima to latest version
|
2025-06-07 19:16:50 +02:00 |
|
|
|
0671f0ad7f
|
Refactor notebooks for workflow generation
|
2025-06-06 17:05:10 +02:00 |
|
|
|
7b3404ecd9
|
Added workflows folder and utils.py to support workflow generation
|
2025-06-06 17:03:25 +02:00 |
|
|
|
160791b738
|
Refactor steps to collect information for renku workflow file generation
|
2025-06-06 17:02:13 +02:00 |
|
|
|
a4847f0071
|
Renamed Dockerfile to avoid conflicts with project rekurization/init
|
2025-06-04 14:10:24 +02:00 |
|
|
|
effd5b865e
|
Replace nonoperation reviewPannel in app/data_flagging_app.py with date range picker. Cached time column to speed up figure update but it doesnot look there was much improvement.
|
2025-06-04 14:03:45 +02:00 |
|
|
|
da6884ef21
|
Fix bug in app/data_flagging_app.py. This is a TODO/BUG [from Leïla] Correct error when flags are loaded in the app.
|
2025-06-04 10:47:48 +02:00 |
|
|
|
c15aa4e828
|
Merge pull request 'WIP.new_changes_leila' (#1) from new_changes_leila into main
Reviewed-on: APOG/acsmnode#1
|
2025-06-04 09:35:31 +02:00 |
|
|
|
fc6f6708b8
|
Merge branch 'main' into new_changes_leila
|
2025-06-04 09:34:12 +02:00 |
|
|
|
8afa2f98d1
|
Update notebooks/acsm_pipeline.ipynb. Step 5.2: added all species for the new uncertainty
|
2025-05-28 11:51:36 +02:00 |
|
|
|
3a23db1a12
|
Update TODO.md. Added some todos and deleted one that is done now.
|
2025-05-28 11:48:26 +02:00 |
|
|
|
196e237838
|
Update pipelines/steps/utils.py. Changes uncertainty_estimate
|
2025-05-28 08:48:38 +02:00 |
|
