299 Commits

Author SHA1 Message Date
151719729c Prepare v1.0.0 release as acsm-fairifier v1.0.0 2025-07-04 15:19:14 +02:00
fd68fa4ca3 Update campaignDescriptor.yaml with new instructions 2025-07-04 14:53:41 +02:00
e80abbdf9a Update README.md with conda forge install instructions and input data format. Add environment.yml to construct comp env based on conda forge. 2025-07-04 14:52:29 +02:00
41af4cabe2 Update dima to latest version 2025-06-29 17:49:31 +02:00
c694e4c71d Update submodule to tag v1.0.0 2025-06-26 11:30:42 +02:00
367f8d5ca5 Update dima to latest version 2025-06-25 16:55:03 +02:00
267988514d Update docker-compose.yaml to make changes in the whole project persistent 2025-06-25 16:47:20 +02:00
2475e21101 Fix typos in CampaignDescriptor.yaml 2025-06-25 16:46:35 +02:00
28b7b539e8 Update dockerfile to comply with psi rules about anaconda 2025-06-25 14:21:16 +02:00
1bba5cd755 Comment out dot.view() for compatibility issues running on docker 2025-06-22 15:25:52 +02:00
f90ef82a32 Comment out dot.view() for compatibility issues running on docker 2025-06-22 15:22:24 +02:00
967a40f93a Update Dockerfile to contain renderer for graphviz workflow files 2025-06-22 15:06:13 +02:00
6547cd9e17 Update campaignDescriptor.yaml with instruction details 2025-06-22 15:00:57 +02:00
7fc2ee211d Update readme.md with clarifying statement. NETWORK_MOUNT env variable defautls to data/ in repo 2025-06-22 14:59:50 +02:00
3f2c3b47f2 Update docker-compose.yaml with env variable NETWORK_MOUNT. Local run: it defaults to data/ and otherwise it takes the value based on .env externally defined. 2025-06-22 14:48:30 +02:00
a80f03463c Update reademe.md 2025-06-22 12:44:50 +02:00
dec7dc47e2 Update docker-compose.yaml to depend on externally defined network drive (e.g., NETWORK_DRIVE) 2025-06-22 12:44:07 +02:00
e6b05b4914 Update campaignDescriptor.yaml to depend on externally defined network drive (e.g., NETWORK_DRIVE) 2025-06-22 12:43:37 +02:00
071d1f49a7 Update dima to latest version 2025-06-22 12:27:48 +02:00
1e4cd3fc8a Update dima to latest version 2025-06-20 13:44:00 +02:00
bb3907d384 Fixed url type in README.md 2025-06-18 08:58:40 +02:00
6d421bdad8 Update docker-compose.yaml. Includes services for running with a network drive or locally 2025-06-17 22:09:00 +02:00
4cda1ffb72 Add poster with figures 2025-06-17 22:07:55 +02:00
5319430d5d Update to README.md, includes main features authors and funding 2025-06-17 22:07:27 +02:00
482db5704d Add AGPL3 licence 2025-06-11 10:36:47 +02:00
23253644f8 Update dima to latest version. Params can now be partially ingested to hdf5 files 2025-06-10 16:04:56 +02:00
56ead34ef9 Correct typo in README.md 2025-06-10 14:45:38 +02:00
0414f5608c update dima to latest version 2025-06-10 14:43:23 +02:00
57c5d9784c Add notebook for worfklow visualization 2025-06-07 20:03:53 +02:00
fda5099221 Change computational env to include graphviz for workflow visualization 2025-06-07 20:02:41 +02:00
457a2ae016 Update workflow step names 2025-06-07 20:01:02 +02:00
8f9790456c Implement plot_workflow_file() --> workflows/utils.py. 2025-06-07 19:54:45 +02:00
fdad73dd77 Update dima to latest version 2025-06-07 19:16:50 +02:00
0671f0ad7f Refactor notebooks for workflow generation 2025-06-06 17:05:10 +02:00
7b3404ecd9 Added workflows folder and utils.py to support workflow generation 2025-06-06 17:03:25 +02:00
160791b738 Refactor steps to collect information for renku workflow file generation 2025-06-06 17:02:13 +02:00
a4847f0071 Renamed Dockerfile to avoid conflicts with project rekurization/init 2025-06-04 14:10:24 +02:00
effd5b865e Replace nonoperation reviewPannel in app/data_flagging_app.py with date range picker. Cached time column to speed up figure update but it doesnot look there was much improvement. 2025-06-04 14:03:45 +02:00
da6884ef21 Fix bug in app/data_flagging_app.py. This is a TODO/BUG [from Leïla] Correct error when flags are loaded in the app. 2025-06-04 10:47:48 +02:00
c15aa4e828 Merge pull request 'WIP.new_changes_leila' (#1) from new_changes_leila into main
Reviewed-on: APOG/acsmnode#1
2025-06-04 09:35:31 +02:00
fc6f6708b8 Merge branch 'main' into new_changes_leila 2025-06-04 09:34:12 +02:00
8afa2f98d1 Update notebooks/acsm_pipeline.ipynb. Step 5.2: added all species for the new uncertainty 2025-05-28 11:51:36 +02:00
3a23db1a12 Update TODO.md. Added some todos and deleted one that is done now. 2025-05-28 11:48:26 +02:00
196e237838 Update pipelines/steps/utils.py. Changes uncertainty_estimate 2025-05-28 08:48:38 +02:00
ddfa1273af update dima to latest version. 2025-05-27 10:14:02 +02:00
a730368678 Add step to adjust uncertainties 2025-05-27 10:03:03 +02:00
f3f830487e Extend pipelines/steps/adjust_uncertainty_column_in_nas_file.py to handle list of variables. 2025-05-27 09:53:12 +02:00
38fe2b8774 Update data chain notebook with step to adjust uncertainties 2025-05-26 20:00:31 +02:00
08ba10dc48 Implement new step pipelines/steps/adjust_uncertainty_column_in_nas_file.py. 2025-05-26 19:50:18 +02:00
b1b8b426fc Update dima to latest version 2025-05-26 19:42:57 +02:00