0a4cb88341
fix: temp fix for large file uploads with dash-uploader (archived repo)
...
Resolves >300MB H5 file upload failures after conda-forge env migration.
Need to replace with Flask endpoint solution.
- Updated upload component to use dash-uploader
- Added dash-uploader to dependencies
- Modified upload callback to handle filepath instead of base64"
2025-09-25 16:43:13 +02:00
3175db94da
Refactor minorly notebooks/demo_acsm_pipeline.ipynb to include Renku Metadata Logging using RenkuWorkflowBuilder class.
2025-09-23 16:18:58 +02:00
c023fd7937
Update README.md with requirement for renku graph visualization.
2025-09-23 16:15:52 +02:00
3140e1b05e
Add run_and_add_step() method in RenkuWorkflowBuilder and improve docstrings. The new method runs step and record renku metadata in a centralized workflow file in yaml format.
2025-09-23 16:14:23 +02:00
3663fce07c
Remove renku workflow recording input parameters in main and delegated that to RenkuWorkflowBuilder. This way we can more easily extent provenance recording to other steps. Steps however still need to return a dictionary with valid structure and renku provenance information.
2025-09-23 16:11:52 +02:00
58ce34d56d
Comment out line that was conflicting with dockercompose file. When activating local acsm processor with whole repo as a volumn, data figures and params folders were not visible in container.
2025-09-23 16:07:21 +02:00
e2d9936de8
Update dima to latest commit
2025-09-20 16:21:47 +02:00
151719729c
Prepare v1.0.0 release as acsm-fairifier
2025-07-04 15:19:14 +02:00
fd68fa4ca3
Update campaignDescriptor.yaml with new instructions
2025-07-04 14:53:41 +02:00
e80abbdf9a
Update README.md with conda forge install instructions and input data format. Add environment.yml to construct comp env based on conda forge.
2025-07-04 14:52:29 +02:00
41af4cabe2
Update dima to latest version
2025-06-29 17:49:31 +02:00
c694e4c71d
Update submodule to tag v1.0.0
2025-06-26 11:30:42 +02:00
367f8d5ca5
Update dima to latest version
2025-06-25 16:55:03 +02:00
267988514d
Update docker-compose.yaml to make changes in the whole project persistent
2025-06-25 16:47:20 +02:00
2475e21101
Fix typos in CampaignDescriptor.yaml
2025-06-25 16:46:35 +02:00
28b7b539e8
Update dockerfile to comply with psi rules about anaconda
2025-06-25 14:21:16 +02:00
1bba5cd755
Comment out dot.view() for compatibility issues running on docker
2025-06-22 15:25:52 +02:00
f90ef82a32
Comment out dot.view() for compatibility issues running on docker
2025-06-22 15:22:24 +02:00
967a40f93a
Update Dockerfile to contain renderer for graphviz workflow files
2025-06-22 15:06:13 +02:00
6547cd9e17
Update campaignDescriptor.yaml with instruction details
2025-06-22 15:00:57 +02:00
7fc2ee211d
Update readme.md with clarifying statement. NETWORK_MOUNT env variable defautls to data/ in repo
2025-06-22 14:59:50 +02:00
3f2c3b47f2
Update docker-compose.yaml with env variable NETWORK_MOUNT. Local run: it defaults to data/ and otherwise it takes the value based on .env externally defined.
2025-06-22 14:48:30 +02:00
a80f03463c
Update reademe.md
2025-06-22 12:44:50 +02:00
dec7dc47e2
Update docker-compose.yaml to depend on externally defined network drive (e.g., NETWORK_DRIVE)
2025-06-22 12:44:07 +02:00
e6b05b4914
Update campaignDescriptor.yaml to depend on externally defined network drive (e.g., NETWORK_DRIVE)
2025-06-22 12:43:37 +02:00
071d1f49a7
Update dima to latest version
2025-06-22 12:27:48 +02:00
1e4cd3fc8a
Update dima to latest version
2025-06-20 13:44:00 +02:00
bb3907d384
Fixed url type in README.md
2025-06-18 08:58:40 +02:00
6d421bdad8
Update docker-compose.yaml. Includes services for running with a network drive or locally
2025-06-17 22:09:00 +02:00
4cda1ffb72
Add poster with figures
2025-06-17 22:07:55 +02:00
5319430d5d
Update to README.md, includes main features authors and funding
2025-06-17 22:07:27 +02:00
482db5704d
Add AGPL3 licence
2025-06-11 10:36:47 +02:00
23253644f8
Update dima to latest version. Params can now be partially ingested to hdf5 files
2025-06-10 16:04:56 +02:00
56ead34ef9
Correct typo in README.md
2025-06-10 14:45:38 +02:00
0414f5608c
update dima to latest version
2025-06-10 14:43:23 +02:00
57c5d9784c
Add notebook for worfklow visualization
2025-06-07 20:03:53 +02:00
fda5099221
Change computational env to include graphviz for workflow visualization
2025-06-07 20:02:41 +02:00
457a2ae016
Update workflow step names
2025-06-07 20:01:02 +02:00
8f9790456c
Implement plot_workflow_file() --> workflows/utils.py.
2025-06-07 19:54:45 +02:00
fdad73dd77
Update dima to latest version
2025-06-07 19:16:50 +02:00
0671f0ad7f
Refactor notebooks for workflow generation
2025-06-06 17:05:10 +02:00
7b3404ecd9
Added workflows folder and utils.py to support workflow generation
2025-06-06 17:03:25 +02:00
160791b738
Refactor steps to collect information for renku workflow file generation
2025-06-06 17:02:13 +02:00
a4847f0071
Renamed Dockerfile to avoid conflicts with project rekurization/init
2025-06-04 14:10:24 +02:00
effd5b865e
Replace nonoperation reviewPannel in app/data_flagging_app.py with date range picker. Cached time column to speed up figure update but it doesnot look there was much improvement.
2025-06-04 14:03:45 +02:00
da6884ef21
Fix bug in app/data_flagging_app.py. This is a TODO/BUG [from Leïla] Correct error when flags are loaded in the app.
2025-06-04 10:47:48 +02:00
c15aa4e828
Merge pull request 'WIP.new_changes_leila' ( #1 ) from new_changes_leila into main
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Reviewed-on: APOG/acsmnode#1
2025-06-04 09:35:31 +02:00
fc6f6708b8
Merge branch 'main' into new_changes_leila
2025-06-04 09:34:12 +02:00
8afa2f98d1
Update notebooks/acsm_pipeline.ipynb. Step 5.2: added all species for the new uncertainty
2025-05-28 11:51:36 +02:00
3a23db1a12
Update TODO.md. Added some todos and deleted one that is done now.
2025-05-28 11:48:26 +02:00
