Files
SP2XR/scripts/run_sp2xr_pipeline.sbatch

23 lines
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#!/bin/bash -l
#SBATCH --partition=general
#SBATCH --time=5-00:00:00
#SBATCH --output=/data/user/bertoz_b/merlin6data/SP2XR_code/logs/run%j.log
#SBATCH --error=/data/user/bertoz_b/merlin6data/SP2XR_code/logs/Error_run%j.log
#SBATCH --clusters=merlin7
#SBATCH --nodes=1
#SBATCH --ntasks=1
#SBATCH --ntasks-per-node=1
#SBATCH --cpus-per-task=1
#SBATCH --job-name=sp2xr_nya
mkdir -p /scratch/$SLURM_JOB_ID
export TMPDIR=/scratch/$SLURM_JOB_ID
module use unstable
source /data/user/bertoz_b/merlin6data/SP2XR_code/.venv/bin/activate
python -u scripts/sp2xr_pipeline.py --config /data/user/bertoz_b/merlin6data/SP2XR_code/tests/run_config.yaml
rm -rf /scratch/$SLURM_JOB_ID