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10554fc41e
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Renamed make_dtype_yaml_compatible func as to_serializable_dtype func
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2024-09-25 16:36:50 +02:00 |
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1e1499c28a
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Robustified definition of path_to_input_dir arg or parameter by ensuring is always defined using forward slashes and then is normalized to the os specification. Improved dry run = True of copy directory func.
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2024-09-25 15:12:19 +02:00 |
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9eeb9d6380
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Moved src/metadata_review_lib.py pipelines/metadata_revision.py
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2024-09-17 16:55:22 +02:00 |
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07401c895f
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Moved src/data_integration_lib.py -> pipelines/data_integration.py
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2024-09-17 15:32:23 +02:00 |
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2dd033bcb3
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Refactored code into functions to parse and validate yaml condif file and to perform specified data integration task using a pipeline like software structure.
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2024-09-17 15:28:11 +02:00 |
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d63f522588
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Major update. Remove file filtering option and outputname input arg. The output name is now the same as the path_to_input_dir + .h5. By default, the hdf5 writer preserves second level subdirectories and the rest are flattend. dir filtering is outsource to copy_dir_with_constraints from utils-
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2024-09-16 16:35:09 +02:00 |
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7a9f7a8c59
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Renamed parameter 'input_file_system_path' to 'path_to_input_directory' for clarity.
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2024-09-16 14:24:55 +02:00 |
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cc0adfca62
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Fixed import statement
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2024-09-13 15:11:25 +02:00 |
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4974246522
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move def get_parent_child_relationships(file: h5py.File) from ..._vis.py to ..._ops.py
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2024-09-13 14:59:11 +02:00 |
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b42482069c
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src/hdf5_data_extraction.py -> src/hdf5_ops.py
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2024-09-13 14:55:12 +02:00 |
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e8e2473ebe
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Added new method to retreive metadata from h5file at a given obj path
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2024-09-13 14:52:07 +02:00 |
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96a2e96b6a
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Fixed import statement after module's relocation
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2024-08-23 16:23:57 +02:00 |
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e4b04b4484
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Modified to use filereader_registry.py.
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2024-08-23 16:10:23 +02:00 |
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d985115125
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Integrated copy h5 file into group functionality, imported from g5505_file_reader
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2024-08-23 15:47:04 +02:00 |
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18165eca1a
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Modified import statements to account for reader module's relocation.
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2024-08-23 13:27:26 +02:00 |
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a0f44a1f4b
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Moved src/g5505_file_reader.py -> instruments/readers/g5505_file_reader.py to increase modularity with respect to new intrument additions.
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2024-08-23 10:11:29 +02:00 |
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1112a214e9
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Moved src/g5505_utils.py to utils/g5505_utils.py
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2024-08-23 07:27:39 +02:00 |
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d7fc38abd9
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Moved get_parent_relationships func into hdf5_vis.py and cleaned up unused import statements
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2024-08-22 09:50:26 +02:00 |
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05d1133e32
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Moved get_parent_child_relationships() funct from hdf5_lib.py tinto hdf5_vis.py to avoid circular dependency between the lower level and higher level module. Thus removed also src.hdf5_lib.py import statement.
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2024-08-22 09:47:57 +02:00 |
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d7c7808400
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Implemented method for appending new attributes to an specific object.
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2024-08-16 09:32:58 +02:00 |
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bb250e9940
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Implemented method to reformat a given column in a datatable holding datetime info into a desired datetime format. During data integration this will serve to normalize datatime formats across data tables
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2024-08-16 08:08:28 +02:00 |
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062a688f47
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Added method to reformat columns containing datetime byte strings into a desired datetime formated object
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2024-08-14 16:22:28 +02:00 |
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c876e925a7
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Modified code to point to new instrument folders location. Also, upgrated code to accept either a user specified location or the default location
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2024-08-12 13:40:01 +02:00 |
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7f0e5384ea
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Moved instruments folder outside src/.
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2024-08-12 10:09:21 +02:00 |
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18aba8d0d3
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Implemented dataset append method in HDF5DatOpsAPI
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2024-08-09 15:25:09 +02:00 |
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5fe7fc4b70
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Developed a class to manage data operations on a given hdf5 file
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2024-08-09 13:23:54 +02:00 |
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8f7f14ab68
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Removed time stamp configuration attributes from ACSM_TOFWARE, because it can be messy for a configuration file.
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2024-08-08 11:24:41 +02:00 |
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74db800e01
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Updated file with new instrument configuration ACSM.
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2024-08-07 16:38:52 +02:00 |
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ae1e3bfc23
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Moved ext_to_reader_dict to g5505_file_reader.py and replaced redear selection based on g5505_reader.select_file_reader(hdf5_file_path).
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2024-08-07 16:30:36 +02:00 |
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4e669b3eee
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Moved hdf5_file_path to file reader mapping and extension definitions to g5505_file_reader_module.py. Created functions to compute file_reader key from path to file in the hdf5 file and select the reader based on the key. This should enable more modular file reader selection.
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2024-08-07 16:21:22 +02:00 |
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3430627494
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Modified reader to output table_preamble as a dataset as opposed to attributes of the file. I believe this is better for readability of the metadata given that those preambles can sometimes contain large ammounts of text.
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2024-08-02 14:37:06 +02:00 |
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938e8e50a1
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Changed names of expected root level metadata attributes.
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2024-07-17 08:48:47 +02:00 |
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a06e28291c
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Added attribution insertion order tracking at the root level and reorganized a few import statements.
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2024-07-17 08:41:40 +02:00 |
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2ebe5f3220
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Made edits to documentation
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2024-07-11 13:42:38 +02:00 |
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f04f5eaaf9
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Robustified column name to description assigment, however it may be a bit slower than before.
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2024-07-10 13:31:47 +02:00 |
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5c6fcabf91
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Updated the yaml instrument descriptions.
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2024-07-10 13:29:14 +02:00 |
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73beb83278
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Moved parse_attribute() from ..review_lib.py into ...utils.py and backpropagate (refactored) changes to respective modules.
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2024-07-10 11:32:00 +02:00 |
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2ce925735d
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Modified return datetime output to a format without colons, which could be problematic for filenaming.
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2024-07-10 09:47:56 +02:00 |
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0a0b4ac41d
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Moved a few functions from ...reader.py and hdf5_lib.py into ..utils.py, and refactored accordingly.
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2024-07-10 09:19:30 +02:00 |
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0c74c52e09
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Removed smogchamber reader because its funtionality is now integrated into g5505_file_reader.py.
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2024-07-09 16:13:01 +02:00 |
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afc6c93823
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Removed non utilized code.
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2024-07-08 15:29:13 +02:00 |
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cb7d914908
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Cleaned code and modified def create_hdf5_file_from_dataframe to create group hierichy implicitly from path rather than recursively.
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2024-07-08 15:24:48 +02:00 |
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92eca4d79e
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Moved remaining git operations in metadata_review_lib.py to git_ops.py and refactored accoringly
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2024-07-05 15:46:20 +02:00 |
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77386432f8
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Merge branch 'main' of https://gitlab.psi.ch/5505/dima
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2024-07-02 16:50:08 +02:00 |
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177a5aa2a1
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Updated documentation.
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2024-07-02 16:49:48 +02:00 |
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ba6d89d8e1
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Modified created at function to output date time and time zone
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2024-07-01 16:19:28 +02:00 |
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c074e45892
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Renamed script_name to processing_file.
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2024-07-01 16:17:25 +02:00 |
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cedfe614e7
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Implemented input argument to enable append information to exisintg attributes, which must take the values of either strings or lists.
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2024-06-20 15:32:33 +02:00 |
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106795ae59
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Added a few lines to detect the existence of the file and change the file mode from 'w' to 'a' based on that information.
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2024-06-20 09:03:47 +02:00 |
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498a51cbc6
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Updated function to add project level metadata at the root group of the hdf5 file.
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2024-06-19 18:31:11 +02:00 |
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