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5d0ab4603f
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Add property to extracted dataset as dataframe. Now time column is of datetime type to facilitate downstream procesing.
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2025-02-04 17:23:32 +01:00 |
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6fae139360
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Implement method in hdf5 manager to infer datetime column in dataset
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2025-02-04 17:13:01 +01:00 |
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32bba4239a
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Synch with remote repo
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2025-02-03 10:31:48 +01:00 |
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a3ccff4079
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Fix typo in html text.
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2025-01-27 13:53:59 +01:00 |
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6653add80c
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Update readme.md and set_up_env.sh
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2025-01-27 13:29:29 +01:00 |
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ef66d8f1c2
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Update unload operation to remove reference and fix logic error to dataset metadata extraction.
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2025-01-24 10:28:43 +01:00 |
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1ae607f73b
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Add validation step to yaml file validation to ensure list type and a minimun length for the 'instrument_datafolder' keyword.
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2025-01-22 15:55:21 +01:00 |
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5b06548d88
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Fix typo on extension items, extensions need to include a dot .json and .yaml.
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2025-01-21 09:30:49 +01:00 |
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45132b42ce
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Add json and yaml extensions to admissible file extension lists.
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2025-01-21 08:57:38 +01:00 |
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dd3ebcfe6d
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Updated to cleared jupyter notebooks
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2025-01-14 14:46:43 +01:00 |
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4f85ca1ad6
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Added comments to explain configuration parameters/or variables.
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2025-01-14 14:25:53 +01:00 |
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2bd2e89134
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Add directory tree structure description.
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2024-12-04 17:20:35 +01:00 |
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600899dca2
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Update .gitignore with output_files/
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2024-12-04 16:53:57 +01:00 |
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4a91785efb
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Add .gitkeep and keep this folder empty. it is only to be used for local processing
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2024-12-04 16:52:50 +01:00 |
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49dff5b87b
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Update readme with getting started section
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2024-12-04 16:24:14 +01:00 |
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3e37854445
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Solved binary incompatibility issue of generated environment by conda installing h5py and numpy from conda-forge or default channels.
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2024-12-04 16:15:42 +01:00 |
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112b88e31f
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Updated bash script and yml env file to set up python interpreter.
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2024-12-04 13:52:35 +01:00 |
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d422067223
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Update to readme.md
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2024-12-03 13:55:45 +01:00 |
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47c9bd8e3d
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Update readme with key features of the repo.
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2024-12-03 13:50:53 +01:00 |
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31d8af6aef
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Updated README.md with software arquitecture figure
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2024-12-02 17:28:22 +01:00 |
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b2455b2456
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Updated README.md with software arquitecture figure
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2024-12-02 17:24:48 +01:00 |
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6bc89ebff0
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Updated README
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2024-12-02 17:22:52 +01:00 |
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1a941bbb6e
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Updated figure name.
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2024-12-02 17:08:36 +01:00 |
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c57bb62ebd
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Updated ci runner pipeline fot gitlab page
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2024-12-02 16:31:49 +01:00 |
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f3bb82a937
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Updated documentation and built doc website
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2024-12-02 16:31:03 +01:00 |
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23e0ced190
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Relocated to visualization module
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2024-12-02 15:39:41 +01:00 |
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fc561a6068
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Add __init__.py
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2024-12-02 15:36:03 +01:00 |
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c373c18062
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Moved hdf5_lib.py to visualization folder
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2024-12-02 15:34:44 +01:00 |
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f2df2ced66
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Removed no longer useful notebook
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2024-12-02 15:32:57 +01:00 |
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4797c8e894
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Added env file specification and bash script for env setup
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2024-12-02 15:10:21 +01:00 |
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2e52109bee
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removed review folder. This is now supposed to be create for review of experimental campaign data objects metadata.
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2024-12-02 14:32:34 +01:00 |
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dccf64ef30
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Configure GitLab Pages
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2024-11-26 13:43:09 +01:00 |
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f4f27b7084
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Add draft of dima documentation
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2024-11-26 13:40:43 +01:00 |
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11ca454b94
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Removed bacause some of the functionalities have been outsourced to other modules src/hdf5_ops.py and src/hdf5_writer.py
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2024-11-26 11:55:06 +01:00 |
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22298f643a
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Merge branch 'main' of https://gitlab.psi.ch/5505/dima
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2024-11-25 15:50:25 +01:00 |
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31a129694c
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Updated instrument dictionaries with variable descriptor names aligned with CF metadata conventions.
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2024-11-25 15:49:49 +01:00 |
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5c61e2391a
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Update to DIMA package path resolution from file.
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2024-11-24 19:45:18 +01:00 |
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1b2b319295
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Attempt to dynamically resolve path to dima package, when excecuted from command line.
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2024-11-24 17:37:38 +01:00 |
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1174ffc8b8
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Commented out metadata info about group members for a given group. This is to simplify yaml or json representation of the metadata.
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2024-11-24 15:57:54 +01:00 |
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d7f6e52068
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Reimplemented code snippet using hdf5_Writer module
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2024-11-24 11:32:26 +01:00 |
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967be876d1
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Moved func create_hdf5_file_from_dataframe() from hdf5_lib_part2 into hdf5_write.py
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2024-11-24 11:30:08 +01:00 |
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0330773f08
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Moved read_mtable_as_dataframe(filename) to src/hdf5_ops.py
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2024-11-24 11:03:44 +01:00 |
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3122c4482f
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Removed logs/ folder. This is usually created locally to trace certain file copying, transfer and conversion processes.
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2024-11-24 10:51:05 +01:00 |
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c257ab6072
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Rerun jupyternotebooks to check their functionality after relocating them to notebooks. OpenBis related python scripts still need to be tested.
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2024-11-24 10:45:40 +01:00 |
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02ded9c11a
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Add hidden.py to the list. This file may contain sensitive information is only to be accessed locally or from a secure location.
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2024-11-24 10:41:32 +01:00 |
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b24d33ab15
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Check whether h5 file being written exists. If so, we do not overwrite it because it may be underdoing refinement, changes or updates, for archiving, sharing, or publishing.
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2024-11-24 10:38:13 +01:00 |
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ca314f971d
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Add utility functions add_project_path_to_sys_path() to set up path to DIMA's modules dynamically.
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2024-11-24 10:08:19 +01:00 |
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a928c4ef4c
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Moved demos .py to notebooks. Note: Maybe turn them to jupyternotebooks for consistency
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2024-11-24 07:49:50 +01:00 |
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6701bc06ad
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Added read_mtable_as_dataframe(filename) back so that jupyter notebook can use it to demonstrate some functionality
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2024-11-23 16:31:29 +01:00 |
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fd92bce802
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Implemented sanitize dataframe function to deal with 'O' which may have numbers or strings detected as string types. Then we use it prior to convert dataframe into structured numpy array.
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2024-11-23 16:28:49 +01:00 |
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