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e80c19ef61
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Update src/hdf5_writer.py to consider data lineage metadata in data ingestion process
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2025-06-07 15:31:13 +02:00 |
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a95fc1fc6a
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Modified output_file_directory attribute in yaml files as ../output_files/
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2025-06-07 15:30:19 +02:00 |
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87462211a9
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Update instruments/readers/nasa_ames_reader.py to handle dirty text entries. Dirty entries of time variables that cannot be properly processed are sent to nat
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2025-05-27 10:12:20 +02:00 |
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6851f03dbd
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Restore instruments/readers/nasa_ames_reader.py to previous version.
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2025-05-26 19:39:21 +02:00 |
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bd74f8310c
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Record missing values for each variable according to EBAS value convention
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2025-05-21 13:53:18 +02:00 |
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e4b2a4cd5a
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Split header in three parts and detect variables and variable descriptions added to attribute dictionary
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2025-05-21 09:19:16 +02:00 |
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a22532d08d
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Register new file reader in the reader registry system.
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2025-05-14 13:51:28 +02:00 |
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ad4339a76b
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Added new filereader dictionary pair for nasames files. This is a first version that may change.
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2025-05-14 13:50:08 +02:00 |
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773b6a6fbe
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Fix import statement in pipelines.data_integration.py
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2025-03-14 10:12:57 +01:00 |
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9276f060b0
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WIP: Update contributing and acknowledgement sections.
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2025-03-11 14:03:22 +01:00 |
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32abd4cd56
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Implemented hdf5_file_reader.py and updated register.yaml and hdf5_writer.py. This replaces previous function __copy_file_in_group().
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2025-02-25 12:25:15 +01:00 |
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5f9f09d288
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Merge branch 'feature/DB_for_FileReader_Repo' into 'main'
Restructuring of file reader system to process multi-instrument data folders.
See merge request 5505-public/dima!3
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2025-02-25 10:48:59 +01:00 |
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295b43a89a
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Merge branch 'main' into 'feature/DB_for_FileReader_Repo'
# Conflicts:
# instruments/filereader_registry.py
# pipelines/data_integration.py
# src/hdf5_writer.py
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2025-02-25 10:41:02 +01:00 |
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064b8b3a62
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Update import statements in pipelines/data_integration.py. from instruments.readers import ... -> from instruments import ...
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2025-02-25 09:21:52 +01:00 |
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db4bb0ef03
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Implemented create_hdf5_from_filesystem_new() using new instrument readers cml interface and subprocesses. This facilitates extension of file reading capabilities by collaborators without requiring changes to file_registry.py. Only additions in folders and registry.yaml.
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2025-02-24 18:48:03 +01:00 |
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92a2560ed7
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Update all file readers with command line interface so we can run them as a subprocess. Added also registry.yaml to decouple code from user-based instrument adaptations or extensions.
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2025-02-24 17:27:12 +01:00 |
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9511377883
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Merge branch 'main' of https://gitlab.psi.ch/5505-public/dima
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2025-02-22 18:02:45 +01:00 |
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1e67745fa4
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Fix import for filereader_registry.py after moving it from intruments/readers/ one level above.
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2025-02-22 17:59:00 +01:00 |
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6ebc699a43
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Moved filereader_registry.py outside readers folder.
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2025-02-22 17:53:19 +01:00 |
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bb48cfa0cd
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Moved filereader_registry.py outside readers folder.
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2025-02-22 17:51:56 +01:00 |
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821d314cb6
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Change import statements with try except to enable explicit import of submodules from import to avoid conflicts with parent project.
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2025-02-22 17:10:53 +01:00 |
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8ce6f588dc
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Implement data_lineage_metadata.json detection and then use it to annotate associated file.
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2025-02-10 15:56:34 +01:00 |
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68a9928c39
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Enable boolean type columns from pandas DataFrame to be suitably converted into numpy structured array
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2025-02-10 15:52:17 +01:00 |
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c28286a626
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Make file reader selection case insensitive by using ext.lower() and update config_text_reader.py to point to renamed dictionary.
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2025-02-08 19:45:16 +01:00 |
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0b29e2ec68
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remove instruments/dictionaries/ICAD_NO2.yaml. Its dict terms are now in ICAD.yaml.
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2025-02-08 19:23:37 +01:00 |
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609bb0b859
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Add dict terms from ICAD_NO2.yaml
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2025-02-08 19:22:27 +01:00 |
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ef7fe70bf0
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Combine dictionaries of ICAD_HONO.yaml and ICAD_NO2.yaml into ICAD.yaml
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2025-02-08 19:21:17 +01:00 |
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b58e205f9f
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Remove skip directory condition when directory keywords are empty. Here, all paths to files should be considered.
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2025-02-07 16:37:01 +01:00 |
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f986edd4a5
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Fix reader txt/csv default behavior.
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2025-02-07 16:25:45 +01:00 |
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0d26777732
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Enable instrumentFolder of form <instFolder>/<category>/ to be trasfered without flatenning
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2025-02-07 16:24:21 +01:00 |
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b374de60f3
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Add try except block to trigger errors for invalid group names.
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2025-02-06 16:07:45 +01:00 |
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2f72177410
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Add constraint to match only path/to/keyword1/keyword2/files containing a composite keyword keyword1/keyword2.
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2025-02-06 15:34:38 +01:00 |
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5d0ab4603f
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Add property to extracted dataset as dataframe. Now time column is of datetime type to facilitate downstream procesing.
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2025-02-04 17:23:32 +01:00 |
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6fae139360
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Implement method in hdf5 manager to infer datetime column in dataset
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2025-02-04 17:13:01 +01:00 |
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32bba4239a
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Synch with remote repo
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2025-02-03 10:31:48 +01:00 |
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a3ccff4079
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Fix typo in html text.
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2025-01-27 13:53:59 +01:00 |
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6653add80c
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Update readme.md and set_up_env.sh
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2025-01-27 13:29:29 +01:00 |
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ef66d8f1c2
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Update unload operation to remove reference and fix logic error to dataset metadata extraction.
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2025-01-24 10:28:43 +01:00 |
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1ae607f73b
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Add validation step to yaml file validation to ensure list type and a minimun length for the 'instrument_datafolder' keyword.
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2025-01-22 15:55:21 +01:00 |
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5b06548d88
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Fix typo on extension items, extensions need to include a dot .json and .yaml.
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2025-01-21 09:30:49 +01:00 |
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45132b42ce
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Add json and yaml extensions to admissible file extension lists.
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2025-01-21 08:57:38 +01:00 |
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dd3ebcfe6d
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Updated to cleared jupyter notebooks
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2025-01-14 14:46:43 +01:00 |
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4f85ca1ad6
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Added comments to explain configuration parameters/or variables.
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2025-01-14 14:25:53 +01:00 |
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2bd2e89134
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Add directory tree structure description.
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2024-12-04 17:20:35 +01:00 |
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600899dca2
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Update .gitignore with output_files/
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2024-12-04 16:53:57 +01:00 |
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4a91785efb
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Add .gitkeep and keep this folder empty. it is only to be used for local processing
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2024-12-04 16:52:50 +01:00 |
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49dff5b87b
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Update readme with getting started section
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2024-12-04 16:24:14 +01:00 |
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3e37854445
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Solved binary incompatibility issue of generated environment by conda installing h5py and numpy from conda-forge or default channels.
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2024-12-04 16:15:42 +01:00 |
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112b88e31f
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Updated bash script and yml env file to set up python interpreter.
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2024-12-04 13:52:35 +01:00 |
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d422067223
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Update to readme.md
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2024-12-03 13:55:45 +01:00 |
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