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df4bd2b3ae
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Add directory tree structure description.
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2024-12-04 17:20:35 +01:00 |
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368e4ce6d8
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Update .gitignore with output_files/
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2024-12-04 16:53:57 +01:00 |
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4d87169732
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Add .gitkeep and keep this folder empty. it is only to be used for local processing
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2024-12-04 16:52:50 +01:00 |
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32c1bd0731
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Update readme with getting started section
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2024-12-04 16:24:14 +01:00 |
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b13b4a4b57
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Solved binary incompatibility issue of generated environment by conda installing h5py and numpy from conda-forge or default channels.
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2024-12-04 16:15:42 +01:00 |
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5fa28ca917
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Updated bash script and yml env file to set up python interpreter.
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2024-12-04 13:52:35 +01:00 |
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d787ce6972
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Update to readme.md
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2024-12-03 13:55:45 +01:00 |
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941bf0e784
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Update readme with key features of the repo.
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2024-12-03 13:50:53 +01:00 |
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68cf2f8d3e
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Updated README.md with software arquitecture figure
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2024-12-02 17:28:22 +01:00 |
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99cc6faf11
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Updated README.md with software arquitecture figure
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2024-12-02 17:24:48 +01:00 |
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39eec2679e
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Updated README
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2024-12-02 17:22:52 +01:00 |
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6319c36cfb
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Updated figure name.
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2024-12-02 17:08:36 +01:00 |
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c97ff1208e
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Updated ci runner pipeline fot gitlab page
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2024-12-02 16:31:49 +01:00 |
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6899894ba1
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Updated documentation and built doc website
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2024-12-02 16:31:03 +01:00 |
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fc139e0ae5
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Relocated to visualization module
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2024-12-02 15:39:41 +01:00 |
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ef8cf9bb4e
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Add __init__.py
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2024-12-02 15:36:03 +01:00 |
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d79877cc9b
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Moved hdf5_lib.py to visualization folder
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2024-12-02 15:34:44 +01:00 |
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fa9edcb115
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Removed no longer useful notebook
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2024-12-02 15:32:57 +01:00 |
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1bc145530c
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Added env file specification and bash script for env setup
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2024-12-02 15:10:21 +01:00 |
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2eec2155b5
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removed review folder. This is now supposed to be create for review of experimental campaign data objects metadata.
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2024-12-02 14:32:34 +01:00 |
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b6a41c3378
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Configure GitLab Pages
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2024-11-26 13:43:09 +01:00 |
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13f070e4c9
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Add draft of dima documentation
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2024-11-26 13:40:43 +01:00 |
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22e201d063
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Removed bacause some of the functionalities have been outsourced to other modules src/hdf5_ops.py and src/hdf5_writer.py
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2024-11-26 11:55:06 +01:00 |
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80a7b650af
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Merge branch 'main' of https://gitlab.psi.ch/5505/dima
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2024-11-25 15:50:25 +01:00 |
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f483e8d7fe
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Updated instrument dictionaries with variable descriptor names aligned with CF metadata conventions.
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2024-11-25 15:49:49 +01:00 |
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fed9aa0a1b
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Update to DIMA package path resolution from file.
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2024-11-24 19:45:18 +01:00 |
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85d44d71d6
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Attempt to dynamically resolve path to dima package, when excecuted from command line.
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2024-11-24 17:37:38 +01:00 |
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6dc89d34fe
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Commented out metadata info about group members for a given group. This is to simplify yaml or json representation of the metadata.
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2024-11-24 15:57:54 +01:00 |
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60f9278f10
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Reimplemented code snippet using hdf5_Writer module
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2024-11-24 11:32:26 +01:00 |
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3db2eeb041
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Moved func create_hdf5_file_from_dataframe() from hdf5_lib_part2 into hdf5_write.py
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2024-11-24 11:30:08 +01:00 |
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2740330709
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Moved read_mtable_as_dataframe(filename) to src/hdf5_ops.py
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2024-11-24 11:03:44 +01:00 |
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ff31c14f92
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Removed logs/ folder. This is usually created locally to trace certain file copying, transfer and conversion processes.
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2024-11-24 10:51:05 +01:00 |
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01767340f9
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Rerun jupyternotebooks to check their functionality after relocating them to notebooks. OpenBis related python scripts still need to be tested.
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2024-11-24 10:45:40 +01:00 |
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7708153a62
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Add hidden.py to the list. This file may contain sensitive information is only to be accessed locally or from a secure location.
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2024-11-24 10:41:32 +01:00 |
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53fae27472
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Check whether h5 file being written exists. If so, we do not overwrite it because it may be underdoing refinement, changes or updates, for archiving, sharing, or publishing.
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2024-11-24 10:38:13 +01:00 |
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d10786a534
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Add utility functions add_project_path_to_sys_path() to set up path to DIMA's modules dynamically.
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2024-11-24 10:08:19 +01:00 |
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058b82ff88
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Moved demos .py to notebooks. Note: Maybe turn them to jupyternotebooks for consistency
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2024-11-24 07:49:50 +01:00 |
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2988d816af
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Added read_mtable_as_dataframe(filename) back so that jupyter notebook can use it to demonstrate some functionality
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2024-11-23 16:31:29 +01:00 |
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ac80b9a3ca
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Implemented sanitize dataframe function to deal with 'O' which may have numbers or strings detected as string types. Then we use it prior to convert dataframe into structured numpy array.
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2024-11-23 16:28:49 +01:00 |
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ca23e363c9
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Moved to notebooks/
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2024-11-23 12:29:55 +01:00 |
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feee8762ed
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Moved to notebooks/
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2024-11-23 12:16:13 +01:00 |
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cc7ad749ca
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Moved to notebooks/ to improve repo organization
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2024-11-23 12:06:27 +01:00 |
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13cb5476b1
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Moved data integration ipynb to notebooks folder to improve readability
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2024-11-23 11:24:28 +01:00 |
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05f16bf717
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Added .pkl extension in the list of admissible file extensions
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2024-11-21 11:47:41 +01:00 |
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59e910a0f9
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Modified logger setup to create monthly logs
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2024-11-21 11:46:11 +01:00 |
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90ae93c124
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Added a logs/ and envs/ folder to gitignore.
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2024-11-21 11:44:38 +01:00 |
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870d60a789
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Improved progress description stdout
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2024-11-10 18:21:00 +01:00 |
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c866ce8ee9
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Fixed command line interface bug
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2024-11-10 18:19:59 +01:00 |
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83b4a12e8b
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Major code refactoring and simplifications to enhance modularity. Included a command line interface.
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2024-11-01 09:52:41 +01:00 |
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2ae8deaf64
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Renamed the input argument yaml_review_file as review_yaml_file.
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2024-11-01 09:51:12 +01:00 |
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