|
|
14b738818c
|
Merge branch 'main' into 'feature/DB_for_FileReader_Repo'
# Conflicts:
# instruments/filereader_registry.py
# pipelines/data_integration.py
# src/hdf5_writer.py
|
2025-02-25 10:41:02 +01:00 |
|
|
|
4f438f86fe
|
Update import statements in pipelines/data_integration.py. from instruments.readers import ... -> from instruments import ...
|
2025-02-25 09:21:52 +01:00 |
|
|
|
68344964ac
|
Implemented create_hdf5_from_filesystem_new() using new instrument readers cml interface and subprocesses. This facilitates extension of file reading capabilities by collaborators without requiring changes to file_registry.py. Only additions in folders and registry.yaml.
|
2025-02-24 18:48:03 +01:00 |
|
|
|
e5fdc6fa31
|
Update all file readers with command line interface so we can run them as a subprocess. Added also registry.yaml to decouple code from user-based instrument adaptations or extensions.
|
2025-02-24 17:27:12 +01:00 |
|
|
|
2cdd6925af
|
Merge branch 'main' of https://gitlab.psi.ch/5505-public/dima
|
2025-02-22 18:02:45 +01:00 |
|
|
|
bc1d65d469
|
Fix import for filereader_registry.py after moving it from intruments/readers/ one level above.
|
2025-02-22 17:59:00 +01:00 |
|
|
|
85d4e39299
|
Moved filereader_registry.py outside readers folder.
|
2025-02-22 17:53:19 +01:00 |
|
|
|
02e926e003
|
Moved filereader_registry.py outside readers folder.
|
2025-02-22 17:51:56 +01:00 |
|
|
|
81be6b54c8
|
Change import statements with try except to enable explicit import of submodules from import to avoid conflicts with parent project.
|
2025-02-22 17:10:53 +01:00 |
|
|
|
df0aca97df
|
Implement data_lineage_metadata.json detection and then use it to annotate associated file.
|
2025-02-10 15:56:34 +01:00 |
|
|
|
b8900cab67
|
Enable boolean type columns from pandas DataFrame to be suitably converted into numpy structured array
|
2025-02-10 15:52:17 +01:00 |
|
|
|
7906387271
|
Make file reader selection case insensitive by using ext.lower() and update config_text_reader.py to point to renamed dictionary.
|
2025-02-08 19:45:16 +01:00 |
|
|
|
cbf468f5ac
|
remove instruments/dictionaries/ICAD_NO2.yaml. Its dict terms are now in ICAD.yaml.
|
2025-02-08 19:23:37 +01:00 |
|
|
|
131704dcf2
|
Add dict terms from ICAD_NO2.yaml
|
2025-02-08 19:22:27 +01:00 |
|
|
|
33aabf45fa
|
Combine dictionaries of ICAD_HONO.yaml and ICAD_NO2.yaml into ICAD.yaml
|
2025-02-08 19:21:17 +01:00 |
|
|
|
3e6f6bc46e
|
Remove skip directory condition when directory keywords are empty. Here, all paths to files should be considered.
|
2025-02-07 16:37:01 +01:00 |
|
|
|
1a843ee2c6
|
Fix reader txt/csv default behavior.
|
2025-02-07 16:25:45 +01:00 |
|
|
|
46ca26a983
|
Enable instrumentFolder of form <instFolder>/<category>/ to be trasfered without flatenning
|
2025-02-07 16:24:21 +01:00 |
|
|
|
36780d1a63
|
Add try except block to trigger errors for invalid group names.
|
2025-02-06 16:07:45 +01:00 |
|
|
|
5943c60216
|
Add constraint to match only path/to/keyword1/keyword2/files containing a composite keyword keyword1/keyword2.
|
2025-02-06 15:34:38 +01:00 |
|
|
|
58386ca10b
|
Add property to extracted dataset as dataframe. Now time column is of datetime type to facilitate downstream procesing.
|
2025-02-04 17:23:32 +01:00 |
|
|
|
d89aebd861
|
Implement method in hdf5 manager to infer datetime column in dataset
|
2025-02-04 17:13:01 +01:00 |
|
|
|
e358d4ab64
|
Synch with remote repo
|
2025-02-03 10:31:48 +01:00 |
|
|
|
5e3f75d66b
|
Fix typo in html text.
|
2025-01-27 13:53:59 +01:00 |
|
|
|
a3a1b8506c
|
Update readme.md and set_up_env.sh
|
2025-01-27 13:29:29 +01:00 |
|
|
|
1b2184d8e1
|
Update unload operation to remove reference and fix logic error to dataset metadata extraction.
|
2025-01-24 10:28:43 +01:00 |
|
|
|
7ffcd90e7b
|
Add validation step to yaml file validation to ensure list type and a minimun length for the 'instrument_datafolder' keyword.
|
2025-01-22 15:55:21 +01:00 |
|
|
|
d59e9d2c0b
|
Fix typo on extension items, extensions need to include a dot .json and .yaml.
|
2025-01-21 09:30:49 +01:00 |
|
|
|
f07dfc0a81
|
Add json and yaml extensions to admissible file extension lists.
|
2025-01-21 08:57:38 +01:00 |
|
|
|
de9c45c21f
|
Updated to cleared jupyter notebooks
|
2025-01-14 14:46:43 +01:00 |
|
|
|
ba49b168c4
|
Added comments to explain configuration parameters/or variables.
|
2025-01-14 14:25:53 +01:00 |
|
|
|
df4bd2b3ae
|
Add directory tree structure description.
|
2024-12-04 17:20:35 +01:00 |
|
|
|
368e4ce6d8
|
Update .gitignore with output_files/
|
2024-12-04 16:53:57 +01:00 |
|
|
|
4d87169732
|
Add .gitkeep and keep this folder empty. it is only to be used for local processing
|
2024-12-04 16:52:50 +01:00 |
|
|
|
32c1bd0731
|
Update readme with getting started section
|
2024-12-04 16:24:14 +01:00 |
|
|
|
b13b4a4b57
|
Solved binary incompatibility issue of generated environment by conda installing h5py and numpy from conda-forge or default channels.
|
2024-12-04 16:15:42 +01:00 |
|
|
|
5fa28ca917
|
Updated bash script and yml env file to set up python interpreter.
|
2024-12-04 13:52:35 +01:00 |
|
|
|
d787ce6972
|
Update to readme.md
|
2024-12-03 13:55:45 +01:00 |
|
|
|
941bf0e784
|
Update readme with key features of the repo.
|
2024-12-03 13:50:53 +01:00 |
|
|
|
68cf2f8d3e
|
Updated README.md with software arquitecture figure
|
2024-12-02 17:28:22 +01:00 |
|
|
|
99cc6faf11
|
Updated README.md with software arquitecture figure
|
2024-12-02 17:24:48 +01:00 |
|
|
|
39eec2679e
|
Updated README
|
2024-12-02 17:22:52 +01:00 |
|
|
|
6319c36cfb
|
Updated figure name.
|
2024-12-02 17:08:36 +01:00 |
|
|
|
c97ff1208e
|
Updated ci runner pipeline fot gitlab page
|
2024-12-02 16:31:49 +01:00 |
|
|
|
6899894ba1
|
Updated documentation and built doc website
|
2024-12-02 16:31:03 +01:00 |
|
|
|
fc139e0ae5
|
Relocated to visualization module
|
2024-12-02 15:39:41 +01:00 |
|
|
|
ef8cf9bb4e
|
Add __init__.py
|
2024-12-02 15:36:03 +01:00 |
|
|
|
d79877cc9b
|
Moved hdf5_lib.py to visualization folder
|
2024-12-02 15:34:44 +01:00 |
|
|
|
fa9edcb115
|
Removed no longer useful notebook
|
2024-12-02 15:32:57 +01:00 |
|
|
|
1bc145530c
|
Added env file specification and bash script for env setup
|
2024-12-02 15:10:21 +01:00 |
|
