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Removed no longer useful notebook

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florez_j
2024-12-02 15:32:57 +01:00
parent 4797c8e894
commit f2df2ced66
1 changed files with 0 additions and 140 deletions
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workflow_data_owner_review.ipynb
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@ -1,140 +0,0 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Import libraries and modules\n",
"\n",
"* Excecute (or Run) Cell"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import sys\n",
"import os\n",
"root_dir = os.path.abspath(os.curdir)\n",
"sys.path.append(root_dir)\n",
"\n",
"import src.metadata_review_lib as metadata_review_lib"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Step 1: initialize metadata review.\n",
"\n",
"* Specify hdf5 file whose metadata is to be reviewed by editing the string variable `hdf5_file_path`.\n",
"* Edit reviewer attributes, i.e., the dict variable `reviewer_attrs` with your own initials and role.\n",
"* Excecute Cell."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"\n",
"#hdf5_file_path = \"output_files/unified_file_smog_chamber_2024-03-25_UTC-OFST_+0100_NG.h5\"\n",
"#yml_file_path = \"output_files/unified_file_smog_chamber_2024-03-25_UTC-OFST_+0100_NG.yaml\"\n",
"\n",
"hdf5_file_path = \"output_files/kinetic_flowtube_study_2022-01-31_LuciaI.h5\"\n",
"yml_file_path = \"output_files/kinetic_flowtube_study_2022-01-31_LuciaI.yaml\"\n",
"\n",
"reviewer_attrs = {'initials': 'LuciaI',\n",
" 'type': 'metadata'}\n",
"\n",
"#output_filename_path, output_yml_filename_path = hdf5_lib.main()\n",
"\n",
"\n",
"review_yaml_file_path, review_status_yaml_file_path = metadata_review_lib.first_initialize_metadata_review(hdf5_file_path, reviewer_attrs, restart=True) \n",
"\n",
"print(review_yaml_file_path, review_status_yaml_file_path) "
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Step 2: Submit metadata review. \n",
"\n",
"* Edit yaml file in review folder and save changes\n",
"* Excecute Cell."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"metadata_review_lib.second_save_metadata_review(review_yaml_file_path,reviewer_attrs)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Step 3: Update hdf5 file metadata w/ submitted review yaml file.\n",
"\n",
"* Make sure previous step was carried out properly.\n",
"* Excecute Cell."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"\n",
"metadata_review_lib.third_update_hdf5_file_with_review(hdf5_file_path, review_yaml_file_path, reviewer_attrs)\n"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Step 4: Complete data-owner review. Update remote repository\n",
"\n",
"* Excecute Cell."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"metadata_review_lib.last_submit_metadata_review(review_yaml_file_path, review_status_yaml_file_path,reviewer_attrs)"
]
}
],
"metadata": {
"kernelspec": {
"display_name": "test_atmos_chem_env",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.9"
}
},
"nbformat": 4,
"nbformat_minor": 2
}