diff --git a/workflow_data_owner_review.ipynb b/workflow_data_owner_review.ipynb deleted file mode 100644 index 0e79137..0000000 --- a/workflow_data_owner_review.ipynb +++ /dev/null @@ -1,140 +0,0 @@ -{ - "cells": [ - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "# Import libraries and modules\n", - "\n", - "* Excecute (or Run) Cell" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": {}, - "outputs": [], - "source": [ - "import sys\n", - "import os\n", - "root_dir = os.path.abspath(os.curdir)\n", - "sys.path.append(root_dir)\n", - "\n", - "import src.metadata_review_lib as metadata_review_lib" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "# Step 1: initialize metadata review.\n", - "\n", - "* Specify hdf5 file whose metadata is to be reviewed by editing the string variable `hdf5_file_path`.\n", - "* Edit reviewer attributes, i.e., the dict variable `reviewer_attrs` with your own initials and role.\n", - "* Excecute Cell." - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": {}, - "outputs": [], - "source": [ - "\n", - "#hdf5_file_path = \"output_files/unified_file_smog_chamber_2024-03-25_UTC-OFST_+0100_NG.h5\"\n", - "#yml_file_path = \"output_files/unified_file_smog_chamber_2024-03-25_UTC-OFST_+0100_NG.yaml\"\n", - "\n", - "hdf5_file_path = \"output_files/kinetic_flowtube_study_2022-01-31_LuciaI.h5\"\n", - "yml_file_path = \"output_files/kinetic_flowtube_study_2022-01-31_LuciaI.yaml\"\n", - "\n", - "reviewer_attrs = {'initials': 'LuciaI',\n", - " 'type': 'metadata'}\n", - "\n", - "#output_filename_path, output_yml_filename_path = hdf5_lib.main()\n", - "\n", - "\n", - "review_yaml_file_path, review_status_yaml_file_path = metadata_review_lib.first_initialize_metadata_review(hdf5_file_path, reviewer_attrs, restart=True) \n", - "\n", - "print(review_yaml_file_path, review_status_yaml_file_path) " - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "# Step 2: Submit metadata review. \n", - "\n", - "* Edit yaml file in review folder and save changes\n", - "* Excecute Cell." - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": {}, - "outputs": [], - "source": [ - "metadata_review_lib.second_save_metadata_review(review_yaml_file_path,reviewer_attrs)" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "# Step 3: Update hdf5 file metadata w/ submitted review yaml file.\n", - "\n", - "* Make sure previous step was carried out properly.\n", - "* Excecute Cell." - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": {}, - "outputs": [], - "source": [ - "\n", - "metadata_review_lib.third_update_hdf5_file_with_review(hdf5_file_path, review_yaml_file_path, reviewer_attrs)\n" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "# Step 4: Complete data-owner review. Update remote repository\n", - "\n", - "* Excecute Cell." - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": {}, - "outputs": [], - "source": [ - "metadata_review_lib.last_submit_metadata_review(review_yaml_file_path, review_status_yaml_file_path,reviewer_attrs)" - ] - } - ], - "metadata": { - "kernelspec": { - "display_name": "test_atmos_chem_env", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.11.9" - } - }, - "nbformat": 4, - "nbformat_minor": 2 -}