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Moved get_parent_relationships func into hdf5_vis.py and cleaned up unused import statements

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florez_j
2024-08-22 09:50:26 +02:00
parent 05d1133e32
commit d7fc38abd9
1 changed files with 0 additions and 45 deletions
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45
src/hdf5_lib.py
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@ -8,21 +8,9 @@ import numpy as np
import h5py import h5py
import logging import logging
import src.g5505_utils as utils import src.g5505_utils as utils
import src.hdf5_vis as hdf5_vis
import src.g5505_file_reader as g5505f_reader import src.g5505_file_reader as g5505f_reader
def read_mtable_as_dataframe(filename): def read_mtable_as_dataframe(filename):
""" Reconstruct a Matlab Table encoded in a .h5 file as a Pandas DataFrame. The input .h5 file """ Reconstruct a Matlab Table encoded in a .h5 file as a Pandas DataFrame. The input .h5 file
@ -143,39 +131,6 @@ def is_nested_hierarchy(df) -> bool:
return all([are_nested(df_tmp,'level_'+str(i)+'_groups','level_'+str(i+1)+'_groups') for i in range(len(df_tmp.columns)-1)]) return all([are_nested(df_tmp,'level_'+str(i)+'_groups','level_'+str(i+1)+'_groups') for i in range(len(df_tmp.columns)-1)])
def get_parent_child_relationships(file: h5py.File):
nodes = ['/']
parent = ['']
#values = [file.attrs['count']]
# TODO: maybe we should make this more general and not dependent on file_list attribute?
#if 'file_list' in file.attrs.keys():
# values = [len(file.attrs['file_list'])]
#else:
# values = [1]
values = [len(file.keys())]
def node_visitor(name,obj):
if name.count('/') <=2:
nodes.append(obj.name)
parent.append(obj.parent.name)
#nodes.append(os.path.split(obj.name)[1])
#parent.append(os.path.split(obj.parent.name)[1])
if isinstance(obj,h5py.Dataset):# or not 'file_list' in obj.attrs.keys():
values.append(1)
else:
print(obj.name)
try:
values.append(len(obj.keys()))
except:
values.append(0)
file.visititems(node_visitor)
return nodes, parent, values
def get_groups_at_a_level(file: h5py.File, level: str): def get_groups_at_a_level(file: h5py.File, level: str):
groups = [] groups = []