diff --git a/src/hdf5_lib.py b/src/hdf5_lib.py index 83c3ab8..510d0f0 100644 --- a/src/hdf5_lib.py +++ b/src/hdf5_lib.py @@ -8,21 +8,9 @@ import numpy as np import h5py import logging - - import src.g5505_utils as utils - -import src.hdf5_vis as hdf5_vis import src.g5505_file_reader as g5505f_reader - - - - - - - - def read_mtable_as_dataframe(filename): """ Reconstruct a Matlab Table encoded in a .h5 file as a Pandas DataFrame. The input .h5 file @@ -143,39 +131,6 @@ def is_nested_hierarchy(df) -> bool: return all([are_nested(df_tmp,'level_'+str(i)+'_groups','level_'+str(i+1)+'_groups') for i in range(len(df_tmp.columns)-1)]) -def get_parent_child_relationships(file: h5py.File): - - nodes = ['/'] - parent = [''] - #values = [file.attrs['count']] - # TODO: maybe we should make this more general and not dependent on file_list attribute? - #if 'file_list' in file.attrs.keys(): - # values = [len(file.attrs['file_list'])] - #else: - # values = [1] - values = [len(file.keys())] - - def node_visitor(name,obj): - if name.count('/') <=2: - nodes.append(obj.name) - parent.append(obj.parent.name) - #nodes.append(os.path.split(obj.name)[1]) - #parent.append(os.path.split(obj.parent.name)[1]) - - if isinstance(obj,h5py.Dataset):# or not 'file_list' in obj.attrs.keys(): - values.append(1) - else: - print(obj.name) - try: - values.append(len(obj.keys())) - except: - values.append(0) - - file.visititems(node_visitor) - - return nodes, parent, values - - def get_groups_at_a_level(file: h5py.File, level: str): groups = []