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Moved copy_file_in_group() into hdf5_lib.py because it is not really doing the same role of all filereaders

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florez_j
2024-08-23 15:45:32 +02:00
parent b5c200d588
commit a4b7c6a8b0
2 changed files with 1 additions and 16 deletions
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0
instruments/text_data_sources.yaml → instruments/readers/config_text_reader.yaml
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17
instruments/readers/g5505_file_reader.py
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@ -27,7 +27,7 @@ file_readers = {
'txt': lambda a1: read_txt_files_as_dict(a1, instruments_dir=default_instruments_dir, work_with_copy=False),
'TXT': lambda a1: read_txt_files_as_dict(a1, instruments_dir=default_instruments_dir, work_with_copy=False),
'dat': lambda a1: read_txt_files_as_dict(a1, instruments_dir=default_instruments_dir, work_with_copy=False),
'h5': lambda a1, a2, a3: copy_file_in_group(a1, a2, a3, work_with_copy=False),
#'h5': lambda a1, a2, a3: copy_file_in_group(a1, a2, a3, work_with_copy=False),
'ACSM_TOFWARE_txt': lambda a1: read_txt_files_as_dict(a1, instruments_dir=default_instruments_dir, work_with_copy=False),
'ACSM_TOFWARE_csv': lambda a1: read_txt_files_as_dict(a1, instruments_dir=default_instruments_dir, work_with_copy=False)
}
@ -110,21 +110,6 @@ def read_xps_ibw_file_as_dict(filename):
return file_dict
def copy_file_in_group(source_file_path, dest_file_obj : h5py.File, dest_group_name, work_with_copy : bool = True):
# Create copy of original file to avoid possible file corruption and work with it.
if work_with_copy:
tmp_file_path = utils.make_file_copy(source_file_path)
else:
tmp_file_path = source_file_path
# Open backup h5 file and copy complet filesystem directory onto a group in h5file
with h5py.File(tmp_file_path,'r') as src_file:
dest_file_obj.copy(source= src_file['/'], dest= dest_group_name)
if 'tmp_files' in tmp_file_path:
os.remove(tmp_file_path)
def read_txt_files_as_dict(filename: str, instruments_dir: str = None, work_with_copy: bool = True):
# If instruments_dir is not provided, use the default path relative to the module directory
if not instruments_dir: