import numpy as np from bokeh.io import curdoc from bokeh.layouts import column, gridplot, row from bokeh.models import ( BasicTicker, Button, ColumnDataSource, DataRange1d, Dropdown, Grid, HoverTool, Image, Line, LinearAxis, PanTool, Plot, Range1d, ResetTool, SaveTool, Spinner, TextInput, Toggle, WheelZoomTool, ) import pyzebra IMAGE_W = 256 IMAGE_H = 128 doc = curdoc() global curent_h5_data, current_index def update_image(): current_image = curent_h5_data[current_index] proj_v_line_source.data.update(x=np.arange(0, IMAGE_W) + 0.5, y=np.mean(current_image, axis=0)) proj_h_line_source.data.update(x=np.mean(current_image, axis=1), y=np.arange(0, IMAGE_H) + 0.5) image_source.data.update(image=[current_image]) index_spinner.value = current_index def filelist_callback(_attr, _old, new): global curent_h5_data, current_index data = pyzebra.read_detector_data(new) curent_h5_data = data current_index = 0 update_image() filelist = Dropdown() filelist.on_change("value", filelist_callback) def fileinput_callback(_attr, _old, new): h5meta_list = pyzebra.read_h5meta(new) file_list = h5meta_list["filelist"] filelist.menu = file_list fileinput = TextInput() fileinput.on_change("value", fileinput_callback) fileinput.value = "/Users/zaharko/1work/ZeBRa/ZebraSoftware/python_for_zebra/hdfdata/1.cami" def index_spinner_callback(_attr, _old, new): global current_index if 0 <= new < curent_h5_data.shape[0]: current_index = new update_image() index_spinner = Spinner(value=0) index_spinner.on_change("value", index_spinner_callback) plot = Plot( x_range=Range1d(0, IMAGE_W, bounds=(0, IMAGE_W)), y_range=Range1d(0, IMAGE_H, bounds=(0, IMAGE_H)), plot_height=IMAGE_H * 3, plot_width=IMAGE_W * 3, toolbar_location="left", ) # ---- tools plot.toolbar.logo = None hovertool = HoverTool(tooltips=[("intensity", "@image")], names=["image_glyph"]) plot.add_tools(PanTool(), WheelZoomTool(maintain_focus=False), SaveTool(), ResetTool(), hovertool) plot.toolbar.active_scroll = plot.tools[1] # ---- axes plot.add_layout(LinearAxis(), place="above") plot.add_layout(LinearAxis(major_label_orientation="vertical"), place="right") # ---- grid lines plot.add_layout(Grid(dimension=0, ticker=BasicTicker())) plot.add_layout(Grid(dimension=1, ticker=BasicTicker())) # ---- rgba image glyph image_source = ColumnDataSource( dict(image=[np.zeros((1, 1), dtype="float32")], x=[0], y=[0], dw=[IMAGE_W], dh=[IMAGE_H],) ) image_glyph = Image(image="image", x="x", y="y", dw="dw", dh="dh") image_renderer = plot.add_glyph(image_source, image_glyph, name="image_glyph") # ---- projections proj_v = Plot( x_range=plot.x_range, y_range=DataRange1d(), plot_height=200, plot_width=IMAGE_W * 3, toolbar_location=None, ) proj_v.add_layout(LinearAxis(major_label_orientation="vertical"), place="right") proj_v.add_layout(LinearAxis(major_label_text_font_size="0pt"), place="below") proj_v.add_layout(Grid(dimension=0, ticker=BasicTicker())) proj_v.add_layout(Grid(dimension=1, ticker=BasicTicker())) proj_v_line_source = ColumnDataSource(dict(x=[], y=[])) proj_v.add_glyph(proj_v_line_source, Line(x="x", y="y", line_color="steelblue")) proj_h = Plot( x_range=DataRange1d(), y_range=plot.y_range, plot_height=IMAGE_H * 3, plot_width=200, toolbar_location=None, ) proj_h.add_layout(LinearAxis(), place="above") proj_h.add_layout(LinearAxis(major_label_text_font_size="0pt"), place="left") proj_h.add_layout(Grid(dimension=0, ticker=BasicTicker())) proj_h.add_layout(Grid(dimension=1, ticker=BasicTicker())) proj_h_line_source = ColumnDataSource(dict(x=[], y=[])) proj_h.add_glyph(proj_h_line_source, Line(x="x", y="y", line_color="steelblue")) def prev_button_callback(): global current_index if current_index > 0: current_index -= 1 update_image() prev_button = Button(label="Previous") prev_button.on_click(prev_button_callback) def next_button_callback(): global current_index if current_index < curent_h5_data.shape[0] - 1: current_index += 1 update_image() next_button = Button(label="Next") next_button.on_click(next_button_callback) def animate(): next_button_callback() def animate_toggle_callback(active): global cb if active: cb = doc.add_periodic_callback(animate, 300) else: doc.remove_periodic_callback(cb) animate_toggle = Toggle(label="Animate") animate_toggle.on_click(animate_toggle_callback) layout_image = gridplot([[proj_v, None], [plot, proj_h]], merge_tools=False) doc.add_root( column( fileinput, filelist, layout_image, row(prev_button, next_button), row(index_spinner, animate_toggle), ) )