.gitea/workflows/deploy.yaml

@@ -1,53 +0,0 @@
-name: pyzebra CI/CD pipeline
-
-on:
-  push:
-    branches:
-      - main
-    tags:
-      - '*'
-
-env:
-  CONDA: /opt/miniforge3
-
-jobs:
-  prepare:
-    runs-on: pyzebra
-    steps:
-      - run: $CONDA/bin/conda config --add channels conda-forge
-      - run: $CONDA/bin/conda config --set solver libmamba
-
-  test-env:
-    runs-on: pyzebra
-    needs: prepare
-    if: github.ref == 'refs/heads/main'
-    env:
-      BUILD_DIR: ${{ runner.temp }}/conda_build
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v4
-      - run: $CONDA/bin/conda build --no-anaconda-upload --output-folder $BUILD_DIR ./conda-recipe
-      - run: $CONDA/bin/conda remove --name test --all --keep-env -y
-      - run: $CONDA/bin/conda install --name test --channel $BUILD_DIR python=3.8 pyzebra -y
-      - run: sudo systemctl restart pyzebra-test.service
-
-  prod-env:
-    runs-on: pyzebra
-    needs: prepare
-    if: startsWith(github.ref, 'refs/tags/')
-    env:
-      BUILD_DIR: ${{ runner.temp }}/conda_build
-    steps:
-      - name: Checkout repository
-        uses: actions/checkout@v4
-      - run: $CONDA/bin/conda build --token ${{ secrets.ANACONDA_TOKEN }} --output-folder $BUILD_DIR ./conda-recipe
-      - run: $CONDA/bin/conda remove --name prod --all --keep-env -y
-      - run: $CONDA/bin/conda install --name prod --channel $BUILD_DIR python=3.8 pyzebra -y
-      - run: sudo systemctl restart pyzebra-prod.service
-
-  cleanup:
-    runs-on: pyzebra
-    needs: [test-env, prod-env]
-    if: always()
-    steps:
-      - run: $CONDA/bin/conda build purge-all

.gitlab-ci.yml

@@ -0,0 +1,58 @@
+stages:
+  - build
+  - deploy
+  - publish
+  - cleanup
+
+workflow:
+  rules:
+    - if: $CI_COMMIT_TAG
+      variables:
+        BUILD_PATH: /home/pyzebra/build-prod
+    - if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
+      variables:
+        BUILD_PATH: /home/pyzebra/build-test
+
+default:
+  before_script:
+    - source /opt/miniconda3/etc/profile.d/conda.sh
+
+build-job:
+  stage: build
+  script:
+    - conda config --add channels conda-forge
+    - conda config --set solver libmamba
+    - conda build --no-anaconda-upload --output-folder $BUILD_PATH ./conda-recipe
+
+deploy-test-job:
+  stage: deploy
+  environment: testing
+  rules:
+    - if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
+  script:
+    - conda activate test
+    - conda install --channel $BUILD_PATH --force-reinstall pyzebra -y
+    - sudo systemctl restart pyzebra-test.service
+
+deploy-prod-job:
+  stage: deploy
+  environment: production
+  rules:
+    - if: $CI_COMMIT_TAG
+  script:
+    - conda activate prod
+    - conda install --channel $BUILD_PATH pyzebra -y
+    - sudo systemctl restart pyzebra-prod.service
+
+publish-job:
+  stage: publish
+  rules:
+    - if: $CI_COMMIT_TAG
+  script:
+    - conda activate base
+    - anaconda --token $ANACONDA_TOKEN upload $(conda build --output-folder $BUILD_PATH ./conda-recipe --output)
+
+cleanup-job:
+  stage: cleanup
+  script:
+    - conda build purge-all

make_release.py

@@ -7,19 +7,18 @@ import subprocess
 
 
 def main():
-    default_branch = "main"
     branch = subprocess.check_output("git rev-parse --abbrev-ref HEAD", shell=True).decode().strip()
-    if branch != default_branch:
+    if branch != "main":
-        print(f"Aborting, not on '{default_branch}' branch.")
+        print("Aborting, not on 'main' branch.")
         return
 
-    version_filepath = os.path.join(os.path.basename(os.path.dirname(__file__)), "__init__.py")
+    filepath = "pyzebra/__init__.py"
 
     parser = argparse.ArgumentParser()
     parser.add_argument("level", type=str, choices=["patch", "minor", "major"])
     args = parser.parse_args()
 
-    with open(version_filepath) as f:
+    with open(filepath) as f:
         file_content = f.read()
 
     version = re.search(r'__version__ = "(.*?)"', file_content).group(1)
@@ -37,12 +36,11 @@ def main():
 
     new_version = f"{major}.{minor}.{patch}"
 
-    with open(version_filepath, "w") as f:
+    with open(filepath, "w") as f:
         f.write(re.sub(r'__version__ = "(.*?)"', f'__version__ = "{new_version}"', file_content))
 
-    os.system(f"git commit {version_filepath} -m 'Updating for version {new_version}'")
+    os.system(f"git commit {filepath} -m 'Updating for version {new_version}'")
     os.system(f"git tag -a {new_version} -m 'Release {new_version}'")
-    os.system("git push --follow-tags")
 
 
 if __name__ == "__main__":

pyzebra/__init__.py

@@ -6,4 +6,4 @@ from pyzebra.sxtal_refgen import *
 from pyzebra.utils import *
 from pyzebra.xtal import *
 
-__version__ = "0.7.11"
+__version__ = "0.7.10"

pyzebra/app/panel_hdf_param_study.py

@@ -364,7 +364,7 @@ def create():
         _update_proj_plots()
 
     proj_auto_checkbox = CheckboxGroup(
-        labels=["Projections Intensity Range"], active=[0], width=145, margin=[10, 5, 0, 5]
+        labels=["Projections Intensity Range:"], active=[0], width=145, margin=[10, 5, 0, 5]
     )
     proj_auto_checkbox.on_change("active", proj_auto_checkbox_callback)
 

pyzebra/app/panel_hdf_viewer.py

@@ -689,7 +689,7 @@ def create():
         _update_image()
 
     main_auto_checkbox = CheckboxGroup(
-        labels=["Frame Intensity Range"], active=[0], width=145, margin=[10, 5, 0, 5]
+        labels=["Frame Intensity Range:"], active=[0], width=145, margin=[10, 5, 0, 5]
     )
     main_auto_checkbox.on_change("active", main_auto_checkbox_callback)
 
@@ -721,7 +721,7 @@ def create():
         _update_proj_plots()
 
     proj_auto_checkbox = CheckboxGroup(
-        labels=["Projections Intensity Range"], active=[0], width=145, margin=[10, 5, 0, 5]
+        labels=["Projections Intensity Range:"], active=[0], width=145, margin=[10, 5, 0, 5]
     )
     proj_auto_checkbox.on_change("active", proj_auto_checkbox_callback)
 

scripts/pyzebra-test.service

@@ -0,0 +1,11 @@
+[Unit]
+Description=pyzebra-test web server
+
+[Service]
+Type=simple
+User=pyzebra
+ExecStart=/bin/bash /usr/local/sbin/pyzebra-test.sh
+Restart=always
+
+[Install]
+WantedBy=multi-user.target

scripts/pyzebra-test.sh

@@ -0,0 +1,4 @@
+source /opt/miniconda3/etc/profile.d/conda.sh
+
+conda activate test
+python /opt/pyzebra/pyzebra/app/cli.py --port=5010 --allow-websocket-origin=pyzebra.psi.ch:5010 --args --spind-path=/opt/spind

scripts/pyzebra.service

@@ -0,0 +1,10 @@
+[Unit]
+Description=pyzebra web server
+
+[Service]
+Type=simple
+ExecStart=/bin/bash /usr/local/sbin/pyzebra.sh
+Restart=always
+
+[Install]
+WantedBy=multi-user.target

scripts/pyzebra.sh

@@ -0,0 +1,4 @@
+source /opt/miniconda3/etc/profile.d/conda.sh
+
+conda activate prod
+pyzebra --port=80 --allow-websocket-origin=pyzebra.psi.ch:80 --args --spind-path=/opt/spind