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Add optional --sxtal-refgen-path cli argument

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usov_i
2022-04-06 17:38:46 +02:00
parent 7e2c6ad21f
commit d36686177d
1 changed files with 8 additions and 1 deletions
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9
pyzebra/app/cli.py
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@@ -6,7 +6,7 @@ from bokeh.application.application import Application
from bokeh.application.handlers import ScriptHandler from bokeh.application.handlers import ScriptHandler
from bokeh.server.server import Server from bokeh.server.server import Server
from pyzebra.anatric import ANATRIC_PATH from pyzebra import ANATRIC_PATH, SXTAL_REFGEN_PATH
from pyzebra.app.handler import PyzebraHandler from pyzebra.app.handler import PyzebraHandler
logging.basicConfig(format="%(asctime)s %(message)s", level=logging.INFO) logging.basicConfig(format="%(asctime)s %(message)s", level=logging.INFO)
@@ -42,6 +42,13 @@ def main():
"--anatric-path", type=str, default=ANATRIC_PATH, help="path to anatric executable", "--anatric-path", type=str, default=ANATRIC_PATH, help="path to anatric executable",
) )
parser.add_argument(
"--sxtal-refgen-path",
type=str,
default=SXTAL_REFGEN_PATH,
help="path to Sxtal_Refgen executable",
)
parser.add_argument( parser.add_argument(
"--spind-path", type=str, default=None, help="path to spind scripts folder", "--spind-path", type=str, default=None, help="path to spind scripts folder",
) )