zebra/pyzebra
3
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Refactor slice summations

Browse Source
This commit is contained in:
usov_i 2020-04-22 16:24:06 +02:00
parent 891a620016
commit b7903e427e
1 changed files with 4 additions and 15 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

19
pyzebra/xtal.py
View File

@ -382,13 +382,8 @@ def box_int(file,box):
nF=frN-fr0
# omega fit
cnts=np.zeros(nF)
om=dat["rot_angle"][fr0:frN]
j=0
for i in range(fr0,frN):
sliceXY = dat["data"][i,j0:jN,i0:iN]
cnts[j] = np.sum(sliceXY)
j=j+1
cnts = dat["data"][fr0:frN,j0:jN,i0:iN].sum(axis=(1,2))
p0 = [1., 0., 1.]
coeff, var_matrix = curve_fit(gauss, range(len(cnts)), cnts, p0=p0)
@ -411,15 +406,9 @@ def box_int(file,box):
plt.xlabel('Frame N of the box')
label='om'
# gamma fit
sliceXZ=np.zeros((nF,iX))
sliceYZ=np.zeros((nF,jY))
j=0
for i in range(fr0,frN):
sliceXY = dat["data"][i,j0:jN,i0:iN]
sliceXZ[j] = np.sum(sliceXY,axis=0)
sliceYZ[j] = np.sum(sliceXY,axis=1)
j=j+1
sliceXY = dat["data"][fr0:frN,j0:jN,i0:iN]
sliceXZ = np.sum(sliceXY,axis=1)
sliceYZ = np.sum(sliceXY,axis=2)
projX = np.sum(sliceXZ, axis=0)
p0 = [1., 0., 1.]