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Make variable names consistent

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This commit is contained in:
usov_i 2020-04-23 11:12:39 +02:00
parent 6a3ca53de1
commit 4c628c88d2
1 changed files with 6 additions and 6 deletions
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12
pyzebra/xtal.py
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@ -406,7 +406,7 @@ def box_int(file, box):
"""Calculates center of the peak in the NB-geometry angles and Intensity of the peak
Args:
file name, box size [x_min:x_max, y_min:y_max, frame_min:frame_max]
file name, box size [x0:xN, y0:yN, fr0:frN]
Returns:
gamma, omPeak, nu polar angles, Int and data for 3 fit plots
@ -420,11 +420,11 @@ def box_int(file, box):
ddist = dat["ddist"]
# defining indices
i0, j0, iN, jN, fr0, frN = box
x0, y0, xN, yN, fr0, frN = box
# omega fit
om = dat["rot_angle"][fr0:frN]
cnts = np.sum(dat["data"][fr0:frN, j0:jN, i0:iN], axis=(1, 2))
cnts = np.sum(dat["data"][fr0:frN, y0:yN, x0:xN], axis=(1, 2))
p0 = [1.0, 0.0, 1.0]
coeff, var_matrix = curve_fit(gauss, range(len(cnts)), cnts, p0=p0)
@ -447,14 +447,14 @@ def box_int(file, box):
plt.xlabel("Frame N of the box")
label = "om"
# gamma fit
sliceXY = dat["data"][fr0:frN, j0:jN, i0:iN]
sliceXY = dat["data"][fr0:frN, y0:yN, x0:xN]
sliceXZ = np.sum(sliceXY, axis=1)
sliceYZ = np.sum(sliceXY, axis=2)
projX = np.sum(sliceXZ, axis=0)
p0 = [1.0, 0.0, 1.0]
coeff, var_matrix = curve_fit(gauss, range(len(projX)), projX, p0=p0)
x = i0 + coeff[1]
x = x0 + coeff[1]
# gamma plot
x_fit = np.linspace(0, len(projX), 100)
y_fit = gauss(x_fit, *coeff)
@ -468,7 +468,7 @@ def box_int(file, box):
projY = np.sum(sliceYZ, axis=0)
p0 = [1.0, 0.0, 1.0]
coeff, var_matrix = curve_fit(gauss, range(len(projY)), projY, p0=p0)
y = j0 + coeff[1]
y = y0 + coeff[1]
# nu plot
x_fit = np.linspace(0, len(projY), 100)
y_fit = gauss(x_fit, *coeff)