zebra/pyzebra
3
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Add find peak controls

Browse Source
This commit is contained in:
usov_i 2020-10-05 14:33:05 +02:00
parent 15428662f7
commit 4091d4ba32
1 changed files with 23 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

25
pyzebra/app/panel_ccl_integrate.py
View File

@ -21,6 +21,7 @@ from bokeh.models import (
Plot, Plot,
Select, Select,
Spacer, Spacer,
Spinner,
TableColumn, TableColumn,
TextAreaInput, TextAreaInput,
TextInput, TextInput,
@ -157,14 +158,28 @@ def create():
meas_table_source.selected.on_change("indices", meas_table_callback) meas_table_source.selected.on_change("indices", meas_table_callback)
peak_int_ratio_spinner = Spinner(
title="Peak intensity ratio:", value=0.8, step=0.01, low=0, high=1, default_size=145
)
peak_prominence_spinner = Spinner(title="Peak prominence:", value=50, low=0, default_size=145)
smooth_toggle = Toggle(label="Smooth curve") smooth_toggle = Toggle(label="Smooth curve")
window_size_spinner = Spinner(title="Window size:", value=7, step=2, low=1, default_size=145)
poly_order_spinner = Spinner(title="Poly order:", value=3, low=0, default_size=145)
fit_output_textinput = TextAreaInput(title="Fit results:", width=600, height=400) fit_output_textinput = TextAreaInput(title="Fit results:", width=600, height=400)
def process_button_callback(): def process_button_callback():
nonlocal det_data nonlocal det_data
for meas in det_data["Measurements"]: for meas in det_data["Measurements"]:
det_data = pyzebra.ccl_findpeaks(det_data, meas, smooth=smooth_toggle.active) det_data = pyzebra.ccl_findpeaks(
det_data,
meas,
int_threshold=peak_int_ratio_spinner.value,
prominence=peak_prominence_spinner.value,
smooth=smooth_toggle.active,
window_size=window_size_spinner.value,
poly_order=poly_order_spinner.value,
)
num_of_peaks = det_data["Measurements"][meas].get("num_of_peaks") num_of_peaks = det_data["Measurements"][meas].get("num_of_peaks")
if num_of_peaks is not None and num_of_peaks == 1: if num_of_peaks is not None and num_of_peaks == 1:
@ -206,12 +221,18 @@ def create():
save_button.on_click(save_button_callback) save_button.on_click(save_button_callback)
save_button.js_on_click(CustomJS(args={"js_data": js_data}, code=javaScript)) save_button.js_on_click(CustomJS(args={"js_data": js_data}, code=javaScript))
findpeak_controls = column(
row(peak_int_ratio_spinner, peak_prominence_spinner),
smooth_toggle,
row(window_size_spinner, poly_order_spinner),
)
upload_div = Div(text="Or upload .ccl file:") upload_div = Div(text="Or upload .ccl file:")
tab_layout = column( tab_layout = column(
row(proposal_textinput, ccl_file_select), row(proposal_textinput, ccl_file_select),
row(column(Spacer(height=5), upload_div), upload_button), row(column(Spacer(height=5), upload_div), upload_button),
row(meas_table, plot, Spacer(width=30), fit_output_textinput), row(meas_table, plot, Spacer(width=30), fit_output_textinput),
row(column(smooth_toggle, process_button, save_button)), row(column(findpeak_controls, process_button, save_button)),
) )
return Panel(child=tab_layout, title="ccl integrate") return Panel(child=tab_layout, title="ccl integrate")