From 1eafb726d16e6982050c394286f85c5381bef1be Mon Sep 17 00:00:00 2001 From: Benjamin Labrecque Date: Thu, 16 Jul 2026 14:37:18 +0200 Subject: [PATCH] feat: migrate plots python service --- services/dbpm3curr/current/app/uv.lock | 24 +- services/injectionguard/current/app/uv.lock | 24 +- services/master/current/app/uv.lock | 24 +- services/nturns/current/app/uv.lock | 24 +- services/orbitbump/current/app/uv.lock | 24 +- services/plots/current/app/pyproject.toml | 3 + .../plots/current/app/src/agebd_plots/main.py | 6 +- .../current/app/src/agebd_plots/service.py | 309 ++++++++++++++---- services/plots/current/app/uv.lock | 194 ++++++++++- services/postmortemlog/current/app/uv.lock | 24 +- services/scrubbing/current/app/uv.lock | 24 +- services/shifttool/current/app/uv.lock | 24 +- services/taubpm/current/app/uv.lock | 24 +- services/taupct/current/app/uv.lock | 24 +- services/timing/current/app/uv.lock | 24 +- services/topuptool/current/app/uv.lock | 24 +- 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"matplotlib>=3.10.9", + "urllib3>=2.7.0", ] +# TODO: elog [dependency-groups] dev = [ diff --git a/services/plots/current/app/src/agebd_plots/main.py b/services/plots/current/app/src/agebd_plots/main.py index a89cd64..317cce2 100644 --- a/services/plots/current/app/src/agebd_plots/main.py +++ b/services/plots/current/app/src/agebd_plots/main.py @@ -1,13 +1,13 @@ import typer from agebd.enums import LogLevel -from agebd.runner import CallbackRunner +from agebd.runner import PeriodicRunner from agebd.utils import init_logging from agebd_plots import PVs, Service - # TODO: remove: cicd test 10 + def main( log_level: LogLevel = typer.Option( LogLevel.INFO, @@ -23,7 +23,7 @@ def main( service_name = "PLOTS" pvs = PVs(service_name=service_name) service = Service(name=service_name, pvs=pvs) - runner = CallbackRunner(service=service) + runner = PeriodicRunner(service=service) runner.start() diff --git a/services/plots/current/app/src/agebd_plots/service.py b/services/plots/current/app/src/agebd_plots/service.py index cbd8253..5fa7646 100644 --- a/services/plots/current/app/src/agebd_plots/service.py +++ b/services/plots/current/app/src/agebd_plots/service.py @@ -1,49 +1,91 @@ import time -from epics import dbr +import urllib3 -from agebd.pv import LocalPVLink +urllib3.disable_warnings() +from datetime import datetime +from time import sleep, strftime, time + +import elog +import matplotlib.pyplot as plt +import numpy as np +from epics import PV +from matplotlib.dates import DateFormatter, HourLocator + +from agebd.h5 import h5save +from agebd.pv import get_pv_class, get_pv_external_class from agebd.service.base import BaseService from agebd.service.pvs import BasePVs from agebd.utils import printgetversion -from agebd.pv import get_pv_class __version__ = printgetversion(__file__) PV = get_pv_class() +PV_EXTERNAL = get_pv_external_class() + +plt.switch_backend("agg") +plt.rcParams.update({"font.size": 18}) +plt.rcParams["axes.facecolor"] = "white" +plt.rcParams["figure.facecolor"] = "white" +plt.rcParams["lines.markersize"] = 1 +plt.rcParams["lines.linewidth"] = 0.2 +plt.rcParams["agg.path.chunksize"] = 20000 class PVs(BasePVs): - # Option 1: - ## Service specific PVs from dedicated IOC - my_pv1 = PV("AGEBD-PLOTS:AO") # TODO: is this a good PV to use? + light_delivery = PV_EXTERNAL("AGEOP-STATUS:LIGHT-DELIVERY.VAL") + shift_type = PV_EXTERNAL("AGEOP-STATUS:DUO-SHIFT-TYPE.VAL") - ## Service specific PVs from other IOCs - # ... + # fmt: off + buffers_shift = { + 'ARS07-DPCT-0000:CURR' : PV('AGEBD-PLOTS:CURRENT-PCT-9h-BUFFER'), + 'AGEBD-DBPM3CURR:CURRENT-AVG' : PV('AGEBD-PLOTS:CURRENT-BPM-9h-BUFFER'), + 'AGEBD-PARAMS:CURRENT' : PV('AGEBD-PLOTS:CURRENT-9h-BUFFER'), + 'AGEBD-PARAMS:INJECTION-RATE' : PV('AGEBD-PLOTS:INJECTION-RATE-9h-BUFFER'), + 'AGEBD-PARAMS:TRANSMISSION' : PV('AGEBD-PLOTS:TRANSMISSION-9h-BUFFER'), + 'AGEBD-PARAMS:LIFETIME' : PV('AGEBD-PLOTS:LIFETIME-9h-BUFFER'), + 'ARIVA-VMAVE:PRESS-AVE' : PV('AGEBD-PLOTS:MAVAC-AVG-9h-BUFFER'), + 'ARIVA-VMAVE:PRESS-MAX' : PV('AGEBD-PLOTS:MAVAC-MAX-9h-BUFFER'), + 'ARIVA-VMAVE-FE:PRESS-AVE' : PV('AGEBD-PLOTS:FEVAC-AVG-9h-BUFFER'), + 'ARIVA-VMAVE-FE:PRESS-MAX' : PV('AGEBD-PLOTS:FEVAC-MAX-9h-BUFFER'), + 'ABRTL-DDRM-0670:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:ABRTL-DDRM-0670-9h-BUFFER'), + 'ABRTL-DDRM-0950:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:ABRTL-DDRM-0950-9h-BUFFER'), + 'X05LA-DDRM-0330:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:X05LA-DDRM-0330-9h-BUFFER'), + 'X05LA-DDRM-0650:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:X05LA-DDRM-0650-9h-BUFFER'), + 'X09LA-DDRM-0330:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:X09LA-DDRM-0330-9h-BUFFER'), + 'X09LA-DDRM-0790:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:X09LA-DDRM-0790-9h-BUFFER'), + 'ARS01-DDRM-0375:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:ARS01-DDRM-0375-9h-BUFFER'), + 'ARS01-DDRM-1530:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:ARS01-DDRM-1530-9h-BUFFER'), + 'ARS05-DDRM-1530:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:ARS05-DDRM-1530-9h-BUFFER'), + 'ARS05-DDRM-3500:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:ARS05-DDRM-3500-9h-BUFFER'), + 'ARS09-DDRM-1530:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:ARS09-DDRM-1530-9h-BUFFER'), + 'ARS09-DDRM-3500:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:ARS09-DDRM-3500-9h-BUFFER'), + 'ARS12-DDRM-1530:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:ARS12-DDRM-1530-9h-BUFFER'), + 'ARS12-DDRM-3500:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:ARS12-DDRM-3500-9h-BUFFER'), + 'ARS12-DDRM-4400:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:ARS12-DDRM-4400-9h-BUFFER'), + 'ARS12-DDRM-5480:FET1_BIAS_DOSE' : PV('AGEBD-PLOTS:ARS12-DDRM-5480-9h-BUFFER'), + 'X04SA-UIND:GAP-READ' : PV('AGEBD-PLOTS:X04SA-UIND-GAP-9h-BUFFER'), + 'X10SA-UIND:GAP-READ' : PV('AGEBD-PLOTS:X10SA-UIND-GAP-9h-BUFFER'), + 'X12SA-UIND:GAP-READ' : PV('AGEBD-PLOTS:X12SA-UIND-GAP-9h-BUFFER'), + } + + buffers_week = { + 'AGEBD-DBPM3CURR:CURRENT-AVG' : PV('AGEBD-PLOTS:CURRENT-BPM-168h-BUFFER'), + 'ARS07-DPCT-0000:CURR' : PV('AGEBD-PLOTS:CURRENT-PCT-168h-BUFFER'), + 'AGEBD-TAUBPM:TAU' : PV('AGEBD-PLOTS:TAU-BPM-168h-BUFFER'), + 'AGEBD-TAUPCT:TAU' : PV('AGEBD-PLOTS:TAU-PCT-168h-BUFFER'), + 'AGEBD-SCRUBBING:TOPUP-TAU' : PV('AGEBD-PLOTS:TAU-TOPUP-168h-BUFFER'), + 'AGEBD-TAUBPM:INJRATE' : PV('AGEBD-PLOTS:INJRATE-BPM-168h-BUFFER'), + 'AGEBD-TAUPCT:INJRATE' : PV('AGEBD-PLOTS:INJRATE-PCT-168h-BUFFER'), + 'ARIVA-VMAVE:PRESS-AVE' : PV('AGEBD-PLOTS:MAVAC-AVG-168h-BUFFER'), + 'ARIVA-VMAVE:PRESS-MAX' : PV('AGEBD-PLOTS:MAVAC-MAX-168h-BUFFER'), + 'ARIVA-VMAVE-FE:PRESS-AVE' : PV('AGEBD-PLOTS:FEVAC-AVG-168h-BUFFER'), + 'ARIVA-VMAVE-FE:PRESS-MAX' : PV('AGEBD-PLOTS:FEVAC-MAX-168h-BUFFER'), + } + # fmt: on def __init__(self, service_name: str, pv_factory=PV): super().__init__(service_name, pv_factory) - PV = pv_factory - - # TODO: can we do this cleaner? Maybe mechanism for - # settings initial values in dev mode (e.g. ini file) - if isinstance(self.onoff, LocalPVLink): - self.onoff.value = True - - # Option 2: - ## Service specific PVs from dedicated IOC - self.my_pv2 = PV( - "AGEBD-PLOTS:BO" - ) # TODO: is this a good PV to use? - - ## Service specific PVs from other IOCs - # ... - - # TODO: class attribute names usually lowercase - # usually it is advisable to trigger the mainloop of a service on changes of certain PVs: - self.CallbackPV = PV( - "AGEBD-PLOTS:CALLBACK", auto_monitor=dbr.DBE_VALUE - ) # TODO: ok? class Service(BaseService[PVs]): @@ -52,42 +94,193 @@ class Service(BaseService[PVs]): name: str, pvs: PVs, version: str = __version__, - sleep_interval: float = 0.1, + sleep_interval: float = 0.01, ): super().__init__(name, pvs, version, sleep_interval) - # TODO: What is this for? - self.path = "sls/bd/bin" + self.path_shift = "/sls/op/data/applications/plots_shift/" + self.path_weekly = "/sls/op/data/applications/plots_weekly/" + self.lastshiftplot = -1 + self.lastweekplot = -1 + self.logbook = elog.open( + "https://elog-gfa.psi.ch/SLS/", + user="robot", + password="robot", + use_ssl=True, + ) def update(self): - # when callback is fired, this code will be executed - if self.CallbackFired: - ####################################################################################### - ####################################################################################### - # here goes all the code that your service - # is supposed to be running when the callback is fired - time.sleep(1) - ####################################################################################### - ####################################################################################### + pvs = self.pvs - # callback done - self.CallbackFired = 0 + dtn = datetime.now() + minute = dtn.minute + hour = dtn.hour + weekday = dtn.weekday() + day = dtn.day + shift_type = pvs.shift_type.get() - ####################################################################################### - ####################################################################################### - # here goes all the code that your service - # is supposed to be running in any case, e.g., + # shift plots + if hour in [6, 14, 22] and minute == 30 and hour != self.lastshiftplot: + self.lastshiftplot = hour - # update some pvs/vals - my_pv1_random_val = str(time.clock_gettime_ns(0))[-1] - self.pvs.my_pv1.put(my_pv1_random_val) - # self.pvs.my_pv2.put("MY_PV2 value") + print("Preparing shift plots...") + print(" ... fetching data") - # get some pvs/vals - self.val1 = self.pvs.my_pv1.get() - self.val2 = self.pvs.my_pv2.get() + data = {pv: pvs.buffers_shift[pv].get() for pv in pvs.buffers_shift} + Npts = len(data["ARS07-DPCT-0000:CURR"]) + tf = int(pvs.buffers_shift["ARS07-DPCT-0000:CURR"].timestamp) + timevec = np.array( + [datetime.fromtimestamp(t) for t in np.linspace(tf - Npts - 1, tf, Npts)] + ) + data.update({"time": np.array([np.datetime64(t) for t in timevec], dtype="S30")}) - # maybe sleep to limit the update loop execution rate - time.sleep(1) - ####################################################################################### - ####################################################################################### + print(" ...saving data") + h5save(self.path_shift + "ShiftPlotSLS", data) + print(" ...data saved") + + print(" ...preparing plots") + Nplots = 1 + fig = plt.figure(figsize=(16, 9 * Nplots), constrained_layout=True) + + ax = fig.add_subplot(Nplots, 1, 1) + ax.plot(timevec, data["ARS07-DPCT-0000:CURR"], "-xg", label="ARS07-DPCT-0000:CURR") + ax.tick_params(axis="y", colors="g", which="both") + lgnd = ax.legend(loc="lower left", bbox_to_anchor=(0.07, 1)) + for handle in lgnd.legendHandles: + handle._markersize = 7 + handle._linewidth = 2 + ax.set_ylabel("Beam current / mA", color="g") + ax.set_ylim([-1, 410]) + ax.set_xlim([timevec[0], timevec[-1]]) + + ax = ax.twinx() + ax.plot( + timevec, + data["AGEBD-PARAMS:LIFETIME"], + "-xb", + label="AGEBD-PARAMS:LIFETIME", + alpha=0.5, + ) + ax.tick_params(axis="y", colors="b", which="both") + lgnd = ax.legend(loc="lower right", bbox_to_anchor=(0.93, 1)) + for handle in lgnd.legendHandles: + handle._markersize = 7 + handle._linewidth = 2 + ax.set_ylabel("Beam lifetime / hours", color="b") + ax.set_ylim([-0.1, 41]) + ax.set_xlim([timevec[0], timevec[-1]]) + ax.set_xlabel("Time") + # Set major ticks every hour and format as HH:MM + ax.xaxis.set_major_locator(HourLocator()) + ax.xaxis.set_major_formatter(DateFormatter("%H:%M")) + ax.grid(axis="both") + + print(" ...saving plots") + file1 = self.path_shift + strftime("%Y%m%d%H%M%S") + "_ShiftPlotSLS.png" + fig.savefig(file1, dpi=192, bbox_inches="tight") + plt.close(fig) + print(" ...saved") + + if shift_type > 0: + print(" ...preparing elog entry...") + dict_of_attributes = { + "Wann": time(), + "Autor": "Plots Logger", + "Eintrag": "Status", + "Titel": "Plots for last shift", + "Encoding": "html", + } + self.msg_id = self.logbook.post( + "", + attributes=dict_of_attributes, + attachments=[file1], + suppress_email_notification=True, + attribute_as_param="value", + ) + print(" ...elog entry submitted...") + + # weekly plots + if weekday == 2 and hour == 7 and day != self.lastweekplot: + self.lastweekplot = day + + print("Preparing weekly plots...") + print(" ... fetching data") + + data = {pv: pvs.buffers_week[pv].get() for pv in pvs.buffers_week} + Npts = len(data["AGEBD-DBPM3CURR:CURRENT-AVG"]) + tf = int(pvs.buffers_week["AGEBD-DBPM3CURR:CURRENT-AVG"].timestamp) + timevec = np.array( + [datetime.fromtimestamp(t) for t in np.linspace(tf - Npts - 1, tf, Npts)] + ) + data.update({"time": np.array([np.datetime64(t) for t in timevec], dtype="S30")}) + + print(" ...saving data") + h5save(self.path_weekly + "WeeklyPlotSLS", data) + print(" ...data saved") + + print(" ...preparing plots") + Nplots = 1 + fig = plt.figure(figsize=(16, 9 * Nplots), constrained_layout=True) + + ax = fig.add_subplot(Nplots, 1, 1) + ax.plot(timevec, data["ARS07-DPCT-0000:CURR"], "-xg", label="ARS07-DPCT-0000:CURR") + ax.tick_params(axis="y", colors="g", which="both") + lgnd = ax.legend(loc="lower left", bbox_to_anchor=(0.07, 1)) + for handle in lgnd.legendHandles: + handle._markersize = 7 + handle._linewidth = 2 + ax.set_ylabel("Beam current / mA", color="g") + ax.set_ylim([-1, 410]) + ax.set_xlim([timevec[0], timevec[-1]]) + + ax = ax.twinx() + ax.plot(timevec, data["AGEBD-TAUBPM:TAU"], "-xb", label="AGEBD-TAUBPM:TAU", alpha=0.5) + ax.tick_params(axis="y", colors="b", which="both") + lgnd = ax.legend(loc="lower right", bbox_to_anchor=(0.93, 1)) + for handle in lgnd.legendHandles: + handle._markersize = 7 + handle._linewidth = 2 + ax.set_ylabel("Beam lifetime / hours", color="b") + ax.set_ylim([-0.1, 41]) + ax.set_xlim([timevec[0], timevec[-1]]) + ax.xaxis.set_major_locator(HourLocator(byhour=12)) + ax.xaxis.set_major_formatter(DateFormatter("%a %H:%M")) + ax.set_xlabel("Time") + ax.grid(axis="both") + + print(" ...saving plots") + file2 = self.path_weekly + strftime("%Y%m%d%H%M%S") + "_WeeklyPlotSLS.png" + fig.savefig(file2, dpi=192, bbox_inches="tight") + plt.close(fig) + print(" ...finished") + + if shift_type > 0: + print(" ...preparing elog entry...") + dict_of_attributes = { + "Wann": time(), + "Autor": "Plots Logger", + "Eintrag": "Status", + "Titel": "Plots for last week", + "Encoding": "html", + } + + print(" ...posting elog entry...") + try: + self.msg_id = self.logbook.post( + "", + attributes=dict_of_attributes, + attachments=[file2], + suppress_email_notification=True, + attribute_as_param="value", + ) + print(" ...elog entry submitted...") + except: + print(" ...elog failed...") + + else: + print(" ...no elog entry during shutdown.") + + print(" ...setting all beamlines to offline") + pvs.light_delivery.put(1) + sleep(0.1) + pvs.light_delivery.put(0) diff --git a/services/plots/current/app/uv.lock b/services/plots/current/app/uv.lock index f8e7691..1909c3c 100644 --- a/services/plots/current/app/uv.lock +++ b/services/plots/current/app/uv.lock @@ -7,11 +7,15 @@ name = "agebd" version = "0.1.0" source = { editable = "../../../../packages/agebd" } dependencies = [ + { name = "h5py" }, { name = "typer" }, ] [package.metadata] -requires-dist = [{ name = "typer", specifier = ">=0.23.2" }] +requires-dist = [ + { name = "h5py", specifier = ">=3.16.0" }, + { name = "typer", specifier = ">=0.23.2" }, +] [package.metadata.requires-dev] dev = [ @@ -26,6 +30,9 @@ version = "0.1.0" source = { editable = "." } dependencies = [ { name = "agebd" }, + { name = "elogpy" }, + { name = "matplotlib" }, + { name = "urllib3" }, ] [package.dev-dependencies] @@ -36,7 +43,12 @@ dev = [ ] [package.metadata] -requires-dist = [{ name = "agebd", editable = "../../../../packages/agebd" }] +requires-dist = [ + { name = "agebd", editable = "../../../../packages/agebd" }, + { 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