sinq-reflectometry/eos
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  • f8daa93c48 Add update to scale for last mesh plot glavic_a 2025-10-10 09:23:04 +02:00
  • 4c2e344d78 Add raw data overview graph with fast reduction glavic_a 2025-10-10 09:14:42 +02:00
  • 469e1c0ab0 Add theta projection glavic_a 2025-10-10 08:50:57 +02:00
  • a947dfd398 Add lambda projection glavic_a 2025-10-09 16:50:19 +02:00
  • 4e2269bdae Add Jochen colormap, LT and YT map automatic colorscale adjustment glavic_a 2025-10-09 13:46:52 +02:00
  • 3f93ec2017 Add Tof projection glavic_a 2025-10-08 16:50:17 +02:00
  • 9d788da2f1 Minor fixed and addition of linear color plots glavic_a 2025-10-08 15:21:58 +02:00
  • f16feac748 Add QProjection and combined projection as well as normalization model glavic_a 2025-10-08 14:14:02 +02:00
  • 709a0c5392 Add TofZProjection glavic_a 2025-10-08 09:26:14 +02:00
  • b71b72c6a3 Add YZProjection glavic_a 2025-10-08 08:54:39 +02:00
  • 2972ffd5d8 Add option to show line in LT plot with q-value glavic_a 2025-10-07 16:50:33 +02:00
  • 31201795b0 implement events2histogram for LZ graph and automatic update glavic_a 2025-10-07 16:19:57 +02:00
  • 99af021b3e separte hdf file header reading, start events2histogram and fix test glavic_a 2025-10-07 11:20:56 +02:00
  • aacbe3ed6f separate AssociatePulseWithMonitor and FilterMonitorThreshold to allow monitor use without wallTime glavic_a 2025-10-07 10:29:02 +02:00
  • 6c0c2fcab8 rename AmorReduction to ReflectivityReduction and use single config object to stay comparable with future reductions glavic_a 2025-10-07 08:48:15 +02:00
  • db5713ab56 bump revision glavic_a 2025-10-06 18:18:57 +02:00
  • 10e9398f29 Remove out-dated windows_build and replace by only one version v3.0.0 glavic_a 2025-10-06 18:15:07 +02:00
  • 2d2f0ec5e4 Add plot command line option and method for projections glavic_a 2025-10-06 17:59:09 +02:00
  • 3b3f0a1823 ignore that cache decorator does not exisit in python 3.8 glavic_a 2025-10-06 17:00:43 +02:00
  • 20122eb32e fix attribute error for python <3.10 glavic_a 2025-10-06 16:57:38 +02:00
  • c68aa29141 deal with backport StrEnum doesn't work with python <3.10 and requirements.txt for backports glavic_a 2025-10-06 16:53:52 +02:00
  • b638237f66 add git lfs to unit_test action glavic_a 2025-10-06 16:46:33 +02:00
  • 9ce902d82c Allow StrEnum from backports for python <3.11 glavic_a 2025-10-06 16:36:26 +02:00
  • a3dccb8429 Merge branch 'refactor' glavic_a 2025-10-06 16:15:34 +02:00
  • b80a01325b Update version information for commit before merge of version 3 v2.2.0 glavic_a 2025-10-06 16:12:47 +02:00
  • 51cb3087cb fix 1e9 factor in time slicing glavic_a 2025-10-06 16:10:14 +02:00
  • e39d8b108a update version info data glavic_a 2025-10-06 15:46:27 +02:00
  • 2985d10883 Fix q-calculation for incidentAngle flag glavic_a 2025-10-06 15:45:35 +02:00
  • cec4fc2965 Modifictaions from discussion, some reduction issues remain (time slicing, q-calculation) glavic_a 2025-10-06 15:34:21 +02:00
  • 2467ba38b8 Move execution script from eos.py to package and rename package to eos, add entry point to setup glavic_a 2025-10-06 11:38:52 +02:00
  • 3a21a8505a Performance evaluation add TODOs glavic_a 2025-10-06 10:10:41 +02:00
  • e9b860f7cd Fix numba dtypes to avoid unneeded conversions glavic_a 2025-10-06 09:57:21 +02:00
  • 8f2695f8a7 Reorganize event actions to separate numba functions glavic_a 2025-10-06 09:54:17 +02:00
  • f6bda1160e Finalize implementation of new file_reader interface into reduction and change tests to run from base path glavic_a 2025-10-06 09:46:03 +02:00
  • 2a10597dc3 Update test case to new data, fix sample model from config parameter, add git attributes for lfs of test files glavic_a 2025-10-06 08:29:51 +02:00
  • 9f0de521ee Add sample model parsing from hdf glavic_a 2025-10-06 08:19:49 +02:00
  • 650730ce12 Move calculation codes out of reducer and add projection classes that handle histogramming glavic_a 2025-10-03 18:31:36 +02:00
  • 93405c880d Ensure normalization file load from file is valid by encoding all actions performed on file with input parameters glavic_a 2025-10-03 11:40:56 +02:00
  • 68f671f447 Perform reduction action for normalization with less steps directly in reducer class, prepare same for datasets glavic_a 2025-10-02 18:26:05 +02:00
  • cb4415ad3d Separate PathResolver and Normalisation, prepare different event treatment for normalization and datafiles glavic_a 2025-10-02 18:03:19 +02:00
  • 2a89e58698 Dynamically extend event recarray and only filter events by setting mask values. Masks are now bitmasks to track which filter applied where. glavic_a 2025-10-02 16:41:09 +02:00
  • 5ecdecfe24 Extract some actions from file reader to event actions as they depend on series time or parameter overwrites glavic_a 2025-10-02 12:23:23 +02:00
  • ae6aa9d24d make refactored reader work run without time-slicing glavic_a 2025-10-02 08:25:11 +02:00
  • 39b267e96c Start including refactored data reader glavic_a 2025-10-01 18:23:12 +02:00
  • fe2975c71d Fix some bugs from new options configuration and make test run again glavic_a 2025-10-01 14:11:16 +02:00
  • 1e78325663 Include old file_reader updates from reorganisation branch glavic_a 2025-10-01 13:09:22 +02:00
  • 1d74d947de Remove old datasets, start update full analysis test glavic_a 2025-10-01 13:01:01 +02:00
  • c540fa16fe Move event data type specification in separate method and decouple event handling from file reader by using a Protocol glavic_a 2025-10-01 10:33:03 +02:00
  • 7cf7ff8e61 All actions within old file_reader now implemented as new style event transformations glavic_a 2025-09-30 18:21:50 +02:00
  • 753b32203a Start separating code into different files glavic_a 2025-09-30 16:05:29 +02:00
  • d936f7ae7d Add option to read dataset partially by limiting maximum events to be read glavic_a 2025-09-30 14:41:16 +02:00
  • 429bd47c59 Move event data to record arrays to keep events/packets/pulses connected glavic_a 2025-09-30 11:38:48 +02:00
  • 1a3c637b39 Begin refactoring file_reader to separate data readout, corrections and other actions to decouple AmorData class glavic_a 2025-09-29 17:51:46 +02:00
  • f46eefb0cb Start cleaning up with separating numba check from function usage glavic_a 2025-09-29 15:13:39 +02:00
  • 0697e5ce80 typo fix stahn 2025-09-30 13:02:00 +02:00
  • f88cea417c orso model ca now be a dict and read from yaml file stahn 2025-09-30 10:21:01 +02:00
  • a22732c612 fixed the wrong proton-current matching stahn 2025-09-16 11:08:52 +02:00
  • ae5b3e789e added TODO for polarization stahn 2025-09-15 17:30:59 +02:00
  • 082d96510b reorganised file expansion stahn 2025-09-08 16:53:52 +02:00
  • e24ce01419 Put output format evaluation in config and use StrEnum for it glavic_a 2025-09-08 16:09:00 +02:00
  • 68e592cfe4 commented out "autoscale" - has to be fixed stahn 2025-09-05 14:45:54 +02:00
  • 03e2f461cb completed help and group entries for command line options stahn 2025-09-05 14:39:46 +02:00
  • 03539eaea6 division by zero in ts mode fixed stahn 2025-09-05 10:42:31 +02:00
  • f5b4f8bba2 changed code formatting, fixed the pc normalisation stahn 2025-09-05 10:22:45 +02:00
  • 319cbb4c2c Start implementing new way to build command line arguments and defaults based on options classes directly glavic_a 2025-09-03 12:47:39 +02:00
  • d1e075cca4 adapted otions to new command-line grammar stahn 2025-09-02 19:18:41 +02:00
  • 7f01f89f2b Start implementing new way to build command line arguments and defaults based on options classes directly glavic_a 2025-08-27 17:19:40 +02:00
  • b6e3cb2eef fixed signe in chopper phase calculation stahn 2025-08-27 08:24:10 +02:00
  • 443cb30b79 fixes in the polarisation handlinge stahn 2025-06-30 15:41:20 +02:00
  • 057742cabd taking chopper info from event stream, new debug output, fix for chopper offset stahn 2025-06-24 11:06:07 +02:00
  • 2689a969f1 fallback in case no chopper trigger signal is available, typo fixes stahn 2025-06-13 12:38:26 +02:00
  • aff4c5b603 added TODO stahn 2025-06-10 09:55:25 +02:00
  • 887ec6fa23 added absolute path to clas stahn 2025-06-10 08:54:58 +02:00
  • 6102ed7123 chopper phases defaults, e2h_2025 stahn 2025-06-08 15:50:08 +02:00
  • bbac3bc943 Merge branch 'main' of https://github.com/jochenstahn/amor stahn 2025-06-08 15:33:51 +02:00
  • bacbd18854 uploading the correct e2h now... stahn 2025-06-08 15:31:51 +02:00
  • aa7919b83d file_reader: cache lookup extended Jochen Stahn 2025-06-08 12:06:43 +02:00
  • f65651d0e5 events2histogram version for new hdf archiecture stahn 2025-06-07 17:19:40 +02:00
  • 1b0df0ec45 some polishing stahn 2025-05-30 11:18:59 +02:00
  • 5f94cc7b92 adapted parameter pathes for hdf file, introduced chopper phases from file stahn 2025-05-29 18:11:51 +02:00
  • a947a70d2d included polarisation info, using chopper trigger signal for normalisation stahn 2025-05-29 11:26:37 +02:00
  • 729332f49d Bump version number glavic_a 2025-01-30 17:04:22 +01:00
  • 500d53a9b2 Fetch commits and tags for release action glavic_a 2025-01-30 16:30:35 +01:00
  • dac76efdd1 set the tag for github release to the last git tag glavic_a 2025-01-30 15:18:52 +01:00
  • e78200a39d add workflow dispatch action for updating release glavic_a 2025-01-30 14:57:06 +01:00
  • c6bde8cd85 add permission id-token to action glavic_a 2025-01-30 14:53:24 +01:00
  • 8e9c03a4fb try github action with trusted publishing (no user/token) glavic_a 2025-01-30 14:48:30 +01:00
  • 155a167e26 update version date v2.1.4 stahn 2025-01-30 13:38:45 +01:00
  • fcc1fd7d84 delete old manual and life_histogram, update events2histogram stahn 2025-01-30 13:37:27 +01:00
  • ee34cc96d4 direct beam reference fixed stahn 2025-01-29 13:54:56 +01:00
  • 64edd8e8d7 Merge pull request #6 from jochenstahn/faster_pulsetimes Jochen Stahn 2025-01-29 08:21:14 +01:00
  • 96681c8f81 fix case where there is no pulse missing glavic_a 2025-01-28 16:17:48 +01:00
  • 87a246196f apply scaling factor when time slicing glavic_a 2025-01-28 16:02:54 +01:00
  • 3607de9864 replace pulseTimeS generation in for loop by filling of pulse gaps glavic_a 2025-01-28 16:00:52 +01:00
  • 23e310ba6a removed fix coded proton time offset stahn 2024-12-16 13:50:46 +01:00
  • 9f2dfbcbe1 corrected output about automatic scaling stahn 2024-12-16 08:15:11 +01:00
  • 25f8708b4c re-bump version, make release dependent on windows build glavic_a 2024-12-13 15:57:12 +01:00
  • 2e565f55be Include timezone data in windows distribution glavic_a 2024-12-13 15:36:22 +01:00
  • b48bea7726 increment version glavic_a 2024-12-13 14:46:23 +01:00
  • 55e9407b67 update revision info v2.1.3 glavic_a 2024-12-13 14:37:50 +01:00