added most up-to-date versions of the SwissMX tools/utils

data/retrieve_data.py

@@ -0,0 +1,27 @@
+import sys, os
+print('starting slic')
+sys.path.insert(0, os.path.expanduser('/sf/cristallina/applications/mx/_obsolete/slic'))
+from slic.utils import json_load, json_save
+from slic.core.acquisition.broker.post_retrieve import post_retrieve_acq_jsons, API_ADDR
+
+fn = "/sf/cristallina/data/p22233/raw/run0067-ocp_ech_420nm_1us_trans35_690nJ/meta/acq0006.json"
+pulses_per_file=1000
+n_missing = 7
+
+acquisition = 20
+print('starting loop')
+file_names=[]
+for i in range(1,n_missing+1):
+    acq='acq{0:0=4d}'.format(acquisition+i)
+    d = json_load(fn)
+    d["start_pulseid"] += i * pulses_per_file
+    d["stop_pulseid"] += i * pulses_per_file
+    print(acq)
+    file_name = f"{acq}.json"
+    print(file_name)
+    file_names.append(file_name)
+    json_save(d,file_name)
+    
+post_retrieve_acq_jsons(API_ADDR, file_names, continue_run=True)
+
+