moved files to more appropriate locations

jfj/read_jfjoch_bs.py

@@ -0,0 +1,51 @@
+#!/usr/bin/env python3
+
+# authors M.Appleby T. Mason J Beale M. Kepla 
+
+"""
+# aim
+Calculate FWHM of x-ray beam from an edge scan
+
+# protocol
+complete edge scan
+## IMPORTANT ##
+- save data as .txt file 
+
+# usage
+python convert-scan-for-pyfai.py -j <jugfrau-name> -s <path to scan file> -n <name of output file>
+
+# output
+creates a .png of fit including FWHM title
+"""
+
+import numpy as np
+import pandas as pd
+import matplotlib.pyplot as plt
+from scipy import stats
+from scipy.optimize import curve_fit
+from scipy.signal import peak_widths, find_peaks
+from scipy import asarray as ar,exp
+from math import sqrt, pi
+import argparse
+
+def loadData(directory): # for data taken by slic
+    num_of_acqs=len([name for name in os.listdir(os.path.join(directory,'data'))])
+    print(num_of_acqs)
+    bkg_estimate_data = []
+    for acquisition in range(1,num_of_acqs+1):
+        with SFDataFiles(os.path.join(directory,'data','acq{:04}.BSDATA.h5'.format(acquisition))) as data:
+            bkg_estimate = data["JF17T16V01j:bkg_estimate"].data
+            #diode = diode.mean()
+            bkg_estimate_data.append(bkg_estimate)
+    scan = SFScanInfo(os.path.join(directory,'meta','scan.json'))
+    motor_positions = scan.readbacks
+    print(motor_positions)
+    print(len(bkg_estimate_data), len(motor_positions))
+    return motor_positions, bkg_estimate_data
+
+directory="path/to/dir"
+load_data(directory)
+
+
+
+