From b06ce3e117d12d2cca827b1d62b5287b85e6eff3 Mon Sep 17 00:00:00 2001
From: beale_j <john.beale@psi.ch>
Date: Tue, 19 Sep 2023 10:41:31 +0200
Subject: [PATCH] Delete crystfel_run.sh

---
 clen_tools/crystfel_run.sh | 25 -------------------------
 1 file changed, 25 deletions(-)
 delete mode 100644 clen_tools/crystfel_run.sh

diff --git a/clen_tools/crystfel_run.sh b/clen_tools/crystfel_run.sh
deleted file mode 100644
index c6aacca..0000000
--- a/clen_tools/crystfel_run.sh
+++ /dev/null
@@ -1,25 +0,0 @@
-/#!/bin/bash
-
-module purge
-module load crystfel/0.10.2
-
-indexamajig -i <path-to-images> \
-  -o <output.steam> \
-  --geometry=<path-to-geom> \
-  --pdb=<path-to-cell> \
-  --indexing=xgandalf-latt-cell \
-  --peaks=peakfinder8 \
-  --integration=rings-grad \
-  --tolerance=10.0,10.0,10.0,2,3,2 \
-  --threshold=10 \
-  --min-snr=5 \
-  --int-radius=3,5,1 \
-  -j 36 \
-  --no-multi \
-  --no-retry \
-  --check-peaks \
-  --max-res=3000 \
-  --min-pix-count=1 \
-  --local-bg-radius=4 \
-  --min-res=85
-