sf-mx/crystfel_tools
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fixed naming bug

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This commit is contained in:
Beale John Henry
2023-12-10 14:40:40 +01:00
parent 4f8adce28e
commit 8fe51dc111
1 changed files with 3 additions and 2 deletions
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5
clen_tools/sample_crystfel-ls.py
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@@ -26,13 +26,13 @@ def h5_sample( lst, sample ):
# read h5.lst - note - removes // from image column # read h5.lst - note - removes // from image column
print( "reading SwissFEL ls file" ) print( "reading SwissFEL ls file" )
# scrub file name # scrub file name
lst_name = os.path.basename( lst ) lst_name = os.path.splitext( os.path.basename( lst ) )[0]
cols = [ "h5", "image" ] cols = [ "h5", "image" ]
sample_df = pd.read_csv( lst, sep="\s//", engine="python", names=cols ) sample_df = pd.read_csv( lst, sep="\s//", engine="python", names=cols )
print( "done" ) print( "done" )
print( "taking {0} image sample".format( sample ) ) print( "taking {0} image sample of {1} image lst".format( sample, len( sample_df ) ) )
# take defined sample # take defined sample
sample_df = sample_df.sample( sample ) sample_df = sample_df.sample( sample )
@@ -71,3 +71,4 @@ if __name__ == "__main__":