various stuff

update fiducial z when moved
autofocus param
camera settings

ModuleFixTarget.py

@@ -301,6 +301,7 @@ class WndFixTarget(QWidget):
     else:
       raise(IOError('unsupported file type'))
 
+
     self._tree.setData(data)
     try:
       wnd=app._mainWnd
@@ -311,6 +312,8 @@ class WndFixTarget(QWidget):
       grp=wnd._goTracked
       for go in data:
         grp.addItem(go)
+        if type(go)==UsrGO.Fiducial:
+          go.sigRegionChangeFinished.connect(wnd.cb_fiducial_update_z)
       data=grp.childItems()
       self._tree.setData(data)
       #wnd._goTracked['objLst']=self._data

Readme.md

@@ -82,22 +82,95 @@ Deploy stuff (22.8.22) quick and dirty
 DST=/sf/cristallina/applications/mx/zamofing_t/
 # /sf/cristallina/applications/mx
 
-ssh saresc-cons-02 mkdir /tmp/zamofing_t/
+ssh saresc-cons-03 mkdir /tmp/zamofing_t/
-rsync -vai --delete ~/Documents/prj/SwissFEL/epics_ioc_modules/ESB_MX saresc-cons-03:$DST
+# add '--delete'  if needed
-rsync -vai --delete ~/Documents/prj/SwissFEL/PBTools saresc-cons-03:$DST
+rsync -vai ~/Documents/prj/SwissFEL/epics_ioc_modules/ESB_MX saresc-cons-03:$DST
+rsync -vai ~/Documents/prj/SwissFEL/PBTools saresc-cons-03:$DST
 
 cd /sf/cristallina/applications/mx/zamofing_t/ESB_MX/python/SwissMX/
 /opt/gfa/python-3.7/latest/bin/python swissmx.py 
 
 /opt/gfa/python-3.8/latest/bin/pip install qtawesome --user
+/opt/gfa/python-3.8/latest/bin/pip install opencv-python
 /opt/gfa/python-3.8/latest/bin/python swissmx.py 
 
 cd $DST
 /opt/gfa/python-3.8/latest/bin/python -m pdb swissmx.py 
 
+rsync -vai saresc-cons-03:/tmp/image*.png ~/Documents/prj/SwissFEL/epics_ioc_modules/ESB_MX/python/SwissMX/scratch/
+
+/home/zamofing_t/Documents/prj/SwissFEL/epics_ioc_modules/ESB_MX/python/SwissMX/scratch/autofocus2
+```
+
+16.9.22 remote Deltatau test:
+-----------------------------
+```
+(s.a. /home/zamofing_t/Documents/prj/SwissFEL/PBTools/pbtools/gather/PBGatherPlot.py
+
+PPMAC=SAR-CPPM-EXPMX1
+rsync -va ~/Documents/prj/SwissFEL/PBTools/pbtools/gather/gather_server root@$PPMAC:/tmp/
+
+ssh root@$PPMAC
+LD_LIBRARY_PATH=/opt/ppmac/libppmac/ /tmp/gather_server
+ssh -L 10001:localhost:22 root@$PPMAC 'uname -a'
+ssh -L 10002:localhost:2332 root@$PPMAC 'uname -a'
+Deltatau host in config:
+localhost:10001:10002 (instead SAR-CPPM-EXPMX1)
+
 ```
 
 
+14.9.22 external code:
+----------------------
+```
+
+ssh gac-cristall@saresc-cons-03
+pw: ValToira_2021
+cd Documents/swissmx_cristallina/scripts/
+
+Jungfrau stuff:
+https://docs.google.com/document/d/1892j2eMsoFmufg-gdXKcSbOLcTDxLHULiNw-iZWAIVc/edit
+'Beam synchronous DAQ with run_control'
+
+Check:
+~/Documents/swissmx_cristallina/scripts/Chip_align.py
+sys.path.insert(0, os.path.expanduser("/photonics/home/gac-cristall/Documents/swissmx_cristallina/slic/"))
+from slic.core.acquisition import SFAcquisition
+
+
+# setup slic parameters
+detectors = [ { "name" : "JF17T16V01", 
+                        "adc_to_energy" : True,
+                        "compression" : True,
+                        "factor" : 11.33,
+                        "geometry" : True,
+                        "double_pixel_action" : "mask",
+                        "remove_raw_files" : False
+                    } ] #["JF17T16V01"]
+bs_channels = [ # have timing signitures
+    "SARES30-LSCP1-CRISTA1:CH0:1",
+#    "SARES30-CAMS156-SMX-OAV:FPICTURE"
+]
+epics_channels = [ # no time signitures
+] 
+
+daq = SFAcquisition(
+    "cristallina", "p20516",
+    default_detectors=detectors, default_channels=bs_channels, default_pvs=epics_channels,
+    rate_multiplicator=1, append_user_tag_to_data_dir=True
+)
+
+
+if acquire == "True":
+    daq.acquire( run_name, n_pulses=n_pulses, wait=False)
+
+
+
+
+Beam synchronous DAQ with with daq_control (command line)
+Python script:
+> python /sf/jungfrau/applications/daq_client/daq_client.py -h
+> python /sf/jungfrau/applications/daq_client/daq_client.py -p p19739 -t no_beam_test -c /sf/cristallina/config/channel_lists/channel_list_bs -e /sf/cristallina/config/channel_lists/channel_list_ca -f /sf/cristallina/config/jungfrau/jf_1d5M.json --start_pulseid 15382163895 --stop_pulseid 15382163905
 
 
 ```
@@ -174,6 +247,10 @@ SARES30-CAMS156-SMX-OAV:HEIGHT 2048
 caqtdm camsf
 caqtdm -macro 'NAME=SARES30-CAMS156-SMX-OAV,CAMNAME=SARES30-CAMS156-SMX-OAV' /sf/controls/config/qt/Camera/CameraMiniView_RF.ui
 caqtdm -macro 'NAME=SARES30-CAMS156-SMX-OAV,CAMNAME=SARES30-CAMS156-SMX-OAV' /sf/controls/config/qt/Camera/CameraExpert_RF.ui
+caqtdm -macro'P=SAR-EXPMX' ESB_MX_exp.ui
+
+
+
 
 03 last file: /sf/controls/config/qt/Camera/CameraMiniView_RF.ui, macro: NAME=SARES30-CAMS156-SMX-OAV,CAMNAME=SARES30-CAMS156-SMX-OAV
 

app_config.py

@@ -187,7 +187,7 @@ class AppCfg(QSettings):
         if key==AppCfg.DT_MISC:
           val={'show_plots': True, 'vel_scl': 1.0, 'pt2pt_time': 10.0,'sync_mode':1,'sync_flag':3,'verbose':0xff}
         elif key==AppCfg.GBL_MISC:
-          val={'img_trace_len':4}
+          val={'img_trace_len':4,'af_range':1,'af_steps':10}
         else:
           val={}
     elif key in (AppCfg.GEO_BEAM_SZ,AppCfg.GEO_BEAM_POS,):
@@ -277,6 +277,8 @@ verbose bits:
         ]},
         {'name':AppCfg.GBL_MISC, 'title':'miscellaneous', 'type':'group', 'children':[
           {'name':'img_trace_len', 'value':gbl_misc['img_trace_len'], 'type':'int', 'tip':tip_sync_flag},
+          {'name':'af_range',      'value':gbl_misc['af_range'],      'type':'float', 'limits':(0 ,3 ),'step':0.05,'suffix':'mm','decimals':3,'tip':'autofocus range (-rng/2 mm..+rng/2 mm..'},
+          {'name':'af_steps',      'value':gbl_misc['af_steps'],      'type':'int',   'limits':(0 ,50),'tip':'numbers of measurements in the range'},
           #{'name':'verbose', 'value':gbl_misc['verbose'], 'type':'int', 'tip':tip_verbose},
         ]},
       #  {'name':AppCfg.GEO_CAM_TRF, 'value':cfg.value(AppCfg.GEO_CAM_TRF), 'type':'str'},

camera.py

@@ -197,10 +197,10 @@ class epics_cam(object):
       elif k=='roi':
         pv_rxs=self.getPv('REGIONX_START');pv_rxe=self.getPv('REGIONX_END')
         pv_rys=self.getPv('REGIONY_START');pv_rye=self.getPv('REGIONY_END')
-        pv_rxs.put(v[0], wait=False)
+        #pv_rxs.put(v[0], wait=False)
-        pv_rxe.put(v[0]+v[2], wait=False)
+        #pv_rxe.put(v[0]+v[2], wait=False)
-        pv_rys.put(v[1], wait=False)
+        #pv_rys.put(v[1], wait=False)
-        pv_rye.put(v[1]+v[3], wait=False)
+        #pv_rye.put(v[1]+v[3], wait=False)
         param.append((pv_rxs,v[0]))
         param.append((pv_rxe,v[0]+v[2]))
         param.append((pv_rys,v[1]))
@@ -240,17 +240,17 @@ class epics_cam(object):
   def update_params(self, *args):
     """update parameters on camera"""
     pv_cam=self.getPv('CAMERA')
-    pv_cam.put(CameraStatus.IDLE, wait=True)
+    pv_cs = self.getPv('CAMERASTATUS')
+    pv_cs.put(CameraStatus.IDLE, wait=True)
     for pv, val in args:
       if not pv.connected:
         _log.info('force connect {}'.format(pv))
         pv.force_connect() #force to connect pv
       _log.debug("updating {} = {}".format(pv.pvname, val))
       pv.put(val, wait=True)
-    pv_cs = self.getPv('CAMERASTATUS')
     #pv_set_param=self.getPv("SET_PARAM")
     #pv_set_param.put(1, wait=True)
-    pv_cam.put(CameraStatus.RUNNING, wait=True)
+    pv_cs.put(CameraStatus.RUNNING, wait=True)
     self.update_size()
 
   @staticmethod

geometry.py

@@ -312,7 +312,7 @@ class geometry:
 
       mx=mtr.argmax()
       _log.debug(f'best focus at idx:{mx}= pos:{posLst[mx]} = metric:{mtr[mx]:.6g}')
-      if mx>0 and mx <len(posLst):
+      if mx>1 and mx+2<=len(posLst):
         #fit parabola and interpolate:
         # y=ax2+bx+c, at positions x=-1, 0, 1, y'= 2a+b == 0 (top of parabola)
         # calc a,b,c:

swissmx.py

@@ -1596,10 +1596,14 @@ Author Thierry Zamofing (thierry.zamofing@psi.ch)
 
   def cb_autofocus(self):
       app=QApplication.instance()
+      cfg=app._cfg
       geo=app._geometry
       #geo.autofocus(app._camera, self.tweakers['base_z'],rng=(-1, 1), n=30,saveImg=True)
-      n=10
+
-      rng=(-1, 1)
+      misc=cfg.value(AppCfg.GBL_MISC)
+      af_range=misc['af_range']
+      n=misc['af_steps']
+      rng=(-af_range/2, af_range/2)
       with pg.ProgressDialog('Progress', 0, n) as dlg:
         geo.autofocus(app._camera, self.tweakers['base_z'],rng, n,dlg)
 
@@ -1947,6 +1951,9 @@ Author Thierry Zamofing (thierry.zamofing@psi.ch)
         go.setPos(geo._opt_ctr-oc_sz/2)
       go.blockSignals(False)  # allow to call cb_marker_moved
 
+  def cb_fiducial_update_z(self,obj,*vargs):
+    obj._z=self.tweakers["base_z"].get_rbv()
+
   def module_fix_target_add_obj(self,*args,**kwargs):
     mft=self._moduleFixTarget
     fx=self.tweakers["fast_x"].get_rbv()
@@ -1969,6 +1976,7 @@ Author Thierry Zamofing (thierry.zamofing@psi.ch)
       #go=UsrGO.Fiducial(bm_pos+bm_sz/2-(20, 20), (40, 40),(fx,fy,bz))
       l=.120
       go=UsrGO.Fiducial((fx-l/2,fy-l/2), (l, l),bz)
+      go.sigRegionChangeFinished.connect(self.cb_fiducial_update_z)
     elif idx==1:
       v=geo.pos2pix((12.5, 0))
       l=np.linalg.norm(v)