#include #include #include #include #include #include #include #include #include #include "RestApi.hpp" #include "ProcessManager.hpp" #include "config.hpp" #include "BufferedWriter.hpp" using namespace std; ProcessManager::ProcessManager(WriterManager& writer_manager, ZmqReceiver& receiver, RingBuffer& ring_buffer, const H5Format& format, uint16_t rest_port, const string& bsread_rest_address, hsize_t frames_per_file) : writer_manager(writer_manager), receiver(receiver), ring_buffer(ring_buffer), format(format), rest_port(rest_port), bsread_rest_address(bsread_rest_address), frames_per_file(frames_per_file) { } void ProcessManager::notify_first_pulse_id(uint64_t pulse_id) { string request_address(bsread_rest_address); // First pulse_id should be an async operation - we do not want to make the writer wait. async(launch::async, [pulse_id, &request_address]{ try { cout << "Sending first received pulse_id " << pulse_id << " to bsread_rest_address " << request_address << endl; stringstream request; request << "curl -X PUT " << request_address << "/start_pulse_id/" << pulse_id; string request_call(request.str()); #ifdef DEBUG_OUTPUT using namespace date; cout << "[" << std::chrono::system_clock::now() << "]"; cout << "[ProcessManager::notify_first_pulse_id] Sending request (" << request_call << ")." << endl; #endif system(request_call.c_str()); } catch (...){} }); } void ProcessManager::notify_last_pulse_id(uint64_t pulse_id) { // Last pulse_id should be a sync operation - we do not want to terminate the process to quickly. cout << "Sending last received pulse_id " << pulse_id << " to bsread address " << bsread_rest_address << endl; try { stringstream request; request << "curl -X PUT " << bsread_rest_address << "/stop_pulse_id/" << pulse_id; cout << "Request: " << request.str() << endl; string request_call(request.str()); #ifdef DEBUG_OUTPUT using namespace date; cout << "[" << std::chrono::system_clock::now() << "]"; cout << "[ProcessManager::notify_last_pulse_id] Sending request (" << request_call << ")." << endl; #endif system(request_call.c_str()); } catch (...){} } void ProcessManager::run_receivers(uint8_t n_receiving_threads) { #ifdef DEBUG_OUTPUT using namespace date; cout << "[" << std::chrono::system_clock::now() << "]"; cout << "[ProcessManager::run_writer] Running writer"; cout << " with n_receiving_threads " << n_receiving_threads; cout << endl; #endif boost::thread_group receivers; for (uint8_t i=0; iframe_index; cout << " and frame_shape [" << frame_metadata->frame_shape[0] << ", " << frame_metadata->frame_shape[1] << "]"; cout << " and endianness " << frame_metadata->endianness; cout << " and type " << frame_metadata->type; cout << " and frame_bytes_size " << frame_metadata->frame_bytes_size; cout << "." << endl; #endif ring_buffer.write(frame_metadata, frame_data); } #ifdef DEBUG_OUTPUT using namespace date; cout << "[" << std::chrono::system_clock::now() << "]"; cout << "[ProcessManager::receive_zmq] Receiver thread stopped." << endl; #endif } void ProcessManager::write_h5 (string output_file, uint64_t n_frames) { try { size_t metadata_buffer_size = frames_per_file != 0 ? frames_per_file : n_frames; auto metadata_buffer = unique_ptr(new MetadataBuffer(metadata_buffer_size, receiver.get_header_values_type())); auto writer = get_buffered_writer(output_file, n_frames, move(metadata_buffer), frames_per_file, config::dataset_increase_step); writer->create_file(); auto raw_frames_dataset_name = config::raw_image_dataset_name; uint64_t last_pulse_id = 0; while(writer_manager.is_writing() || !ring_buffer.is_empty()) { if (ring_buffer.is_empty()) { boost::this_thread::sleep_for(boost::chrono::milliseconds(config::ring_buffer_read_retry_interval)); continue; } const pair< shared_ptr, char* > received_data = ring_buffer.read(); // NULL pointer means that the ringbuffer->read() timeouted. Faster than rising an exception. if(!received_data.first) { continue; } // The acquisition stops when there are no more frames to write. if (!writer_manager.write_frame()) { break; } // When using file roll over, write the file format before switching to the next file. if (!writer->is_data_for_current_file(received_data.first->frame_index)) { #ifdef DEBUG_OUTPUT using namespace date; cout << "[" << std::chrono::system_clock::now() << "]"; cout << "[ProcessManager::write_h5] Frame index " << received_data.first->frame_index; cout << " does not belong to current file. Write format before the file will be closed." << endl; #endif writer->write_metadata_to_file(); write_h5_format(writer->get_h5_file()); } #ifdef PERF_OUTPUT using namespace date; auto start_time_frame = std::chrono::system_clock::now(); #endif // Write image data. writer->write_data(raw_frames_dataset_name, received_data.first->frame_index, received_data.second, received_data.first->frame_shape, received_data.first->frame_bytes_size, received_data.first->type, received_data.first->endianness); #ifdef PERF_OUTPUT using namespace date; using namespace std::chrono; auto frame_time_difference = std::chrono::system_clock::now() - start_time_frame; auto frame_diff_ms = duration(frame_time_difference).count(); cout << "[" << std::chrono::system_clock::now() << "]"; cout << "[ProcessManager::write_h5] Frame index "; cout << received_data.first->frame_index << " written in " << frame_diff_ms << " ms." << endl; #endif ring_buffer.release(received_data.first->buffer_slot_index); #ifdef PERF_OUTPUT using namespace date; auto start_time_metadata = std::chrono::system_clock::now(); #endif // Write image metadata if mapping specified. auto header_values_type = receiver.get_header_values_type(); if (header_values_type) { for (const auto& header_type : *header_values_type) { auto& name = header_type.first; auto value = received_data.first->header_values.at(name); // TODO: Ugly hack until we get the start sequence in the bsread stream itself. if (name == "pulse_id") { if (!last_pulse_id) { last_pulse_id = *(reinterpret_cast(value.get())); notify_first_pulse_id(last_pulse_id); } else { last_pulse_id = *(reinterpret_cast(value.get())); } } writer->cache_metadata(name, received_data.first->frame_index, value.get()); } } #ifdef PERF_OUTPUT using namespace date; using namespace std::chrono; auto metadata_time_difference = std::chrono::system_clock::now() - start_time_metadata; auto metadata_diff_ms = duration(metadata_time_difference).count(); cout << "[" << std::chrono::system_clock::now() << "]"; cout << "[ProcessManager::write_h5] Frame metadata index "; cout << received_data.first->frame_index << " written in " << metadata_diff_ms << " ms." << endl; #endif } // Send the last_pulse_id only if it was set. if (last_pulse_id) { notify_last_pulse_id(last_pulse_id); } if (writer->is_file_open()) { #ifdef DEBUG_OUTPUT using namespace date; cout << "[" << std::chrono::system_clock::now() << "]"; cout << "[ProcessManager::write] Writing file format." << endl; #endif writer->write_metadata_to_file(); write_h5_format(writer->get_h5_file()); } #ifdef DEBUG_OUTPUT using namespace date; cout << "[" << std::chrono::system_clock::now() << "]"; cout << "[ProcessManager::write] Closing file " << writer_manager.get_output_file() << endl; #endif writer->close_file(); #ifdef DEBUG_OUTPUT using namespace date; cout << "[" << std::chrono::system_clock::now() << "]"; cout << "[ProcessManager::write] Writer thread stopped." << endl; #endif writer_manager.writing_completed(); } catch (const exception& ex) { writer_manager.writing_error(ex.what()); } } void ProcessManager::write_h5_format(H5::H5File& file) { const auto parameters = writer_manager.get_parameters(); try { H5FormatUtils::write_format(file, format, parameters); } catch (const runtime_error& ex) { using namespace date; std::cout << "[" << std::chrono::system_clock::now() << "]"; std::cout << "[ProcessManager::write_h5_format] Error while trying to write file format: "<< ex.what() << endl; } }